Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01605	LG1	18759668	18763873	PREDICTED: transcription factor bHLH74	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to blue light
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein dimerization activity

SNP	Position	Effect	Amino acid change
A/T	18760043	5_prime_UTR_variant
C/A	18760048	5_prime_UTR_variant
A/G	18760081	5_prime_UTR_variant
C/A	18760295	5_prime_UTR_variant
T/G	18760296	5_prime_UTR_variant
T/A	18760308	5_prime_UTR_premature_start_codon_gain_variant
A/T	18760314	5_prime_UTR_variant
A/C	18760466	splice_region_variant&intron_variant
T/G	18760490	5_prime_UTR_premature_start_codon_gain_variant
C/T	18760633	5_prime_UTR_variant
A/G	18760642	5_prime_UTR_variant
A/T	18760706	5_prime_UTR_premature_start_codon_gain_variant
T/A	18761196	synonymous_variant	p.Val131Val
G/T	18761200	missense_variant	p.Ala133Ser
C/T	18761207	missense_variant	p.Ser135Phe
T/A	18761211	missense_variant	p.Phe136Leu
C/T	18761214	synonymous_variant	p.Val137Val
C/G	18761218	missense_variant	p.His139Asp
T/A	18761468	upstream_gene_variant
G/A	18761560	upstream_gene_variant
C/A	18761566	upstream_gene_variant
T/G	18761567	upstream_gene_variant
T/C	18761573	upstream_gene_variant
G/A	18761581	upstream_gene_variant
C/A	18761933	missense_variant	p.Thr271Lys
C/A	18761940	missense_variant	p.Ser273Arg
T/C	18762006	upstream_gene_variant
G/A	18762047	splice_region_variant&intron_variant
A/G	18762832	upstream_gene_variant
C/A	18762972	upstream_gene_variant
C/T	18763027	missense_variant	p.Thr393Ile
G/C	18763033	missense_variant	p.Glu401Asp
C/T	18763045	missense_variant	p.Ser399Phe
T/G	18763054	missense_variant	p.Ile408Met
C/T	18763060	missense_variant	p.Thr404Met
T/C	18763066	missense_variant	p.Leu406Pro
T/C	18763501	3_prime_UTR_variant
T/C	18763545	3_prime_UTR_variant
G/A	18763856	3_prime_UTR_variant
T/A	18763862	3_prime_UTR_variant
C/A	18763866	3_prime_UTR_variant
C/G	18763871	splice_region_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01605.3

MGGQENAMGFQHGNENILTCPSSGLSVANVNVSEMAISSVSMAKPSDVANPFLASSAWDPLVSLSQAQTFGGSSMISHTDFANANSSYPLVLENQGITNTSHLVQYMSDSNLGGMVPKVHSYASRGFSEMVGAASFVQHGSADVANSGYPPHYNPIKDTQINGEQSQVEDSIPEEEAPGSGPSGNRRKRGLDHNSTFSPNKNAESETVKDSPGRACDGPKEHEKKPKVEQNNSADLRGKQSAKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGISAYGPGINSSHTFPTGNFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL*

>Vu_01605.1

MGGQENAMGFQHGNENILTCPSSGLSVANVNVSEMAISSVSMAKPSDVANPFLASSAWDPLVSLSQAQTFGGSSMISHTDFANANSSYPLVLENQGITNTSHLVQYMSDSNLGGMVPKVHSYASRGFSEMVGAASFVQHGSADVANSGYPPHYNPIKDTQINGEQSQVEDSIPEEEAPGSGPSGNRRKRGLDHNSTFSPNKNAESETVKDSPGRACDGPKEHEKKPKVEQNNSADLRGKQSAKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDDMELVHMVLVSIPLTHSPLEISMEHWLACLVHHHNSLLCPRMFWTMSSKASMELDTILIQHLTTWDPMGG*

>Vu_01605.2

CDS Sequence:
>Vu_01605.3

ATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGGTCTCAGTGTTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCCGTGTCTATGGCCAAGCCTTCTGATGTTGCTAACCCTTTTCTTGCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGATTTCTCATACCGACTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATTACCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTAGGGGGCATGGTCCCCAAGGTTCACTCCTATGCAAGCAGGGGCTTCTCAGAAATGGTTGGTGCTGCCTCTTTTGTCCAGCATGGGTCTGCTGATGTGGCTAACTCAGGGTACCCACCACATTATAATCCGATCAAGGACACTCAGATTAATGGTGAACAATCTCAGGTTGAGGATTCAATTCCTGAAGAGGAAGCACCAGGATCTGGTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGAATGCTGAGAGTGAAACTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAACAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAGGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAACTTCATTCACGTGAGAGCTAGAAGAGGACAAGCCACAAACAGCCACAGTCTTGCAGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCTGGTTGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATATTCTTCAATCACGCATAGGACATGGAATTAGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCACTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG

>Vu_01605.1

ATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGGTCTCAGTGTTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCCGTGTCTATGGCCAAGCCTTCTGATGTTGCTAACCCTTTTCTTGCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGATTTCTCATACCGACTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATTACCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTAGGGGGCATGGTCCCCAAGGTTCACTCCTATGCAAGCAGGGGCTTCTCAGAAATGGTTGGTGCTGCCTCTTTTGTCCAGCATGGGTCTGCTGATGTGGCTAACTCAGGGTACCCACCACATTATAATCCGATCAAGGACACTCAGATTAATGGTGAACAATCTCAGGTTGAGGATTCAATTCCTGAAGAGGAAGCACCAGGATCTGGTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGAATGCTGAGAGTGAAACTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAACAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAGGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAACTTCATTCACGTGAGAGCTAGAAGAGGACAAGCCACAAACAGCCACAGTCTTGCAGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCTGGTTGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATGACATGGAATTAGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCACTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGA

>Vu_01605.2

Promoter Sequence:
>Vu_01605::LG1:18757668-18759668(+)

TCAAATTTTTATTAATAACATCAAATAAACCAAGGTATTGTGTATTGAAAAATTGGTGAATGTGTCAATTATCAGCTCCAGGGAAGATTCATGGAGAATTAAGTGTCCATGCAACGAGGTATCATGTTATTTGAGTTATAAAATATATCAAAATTGAGAGACAATTTATGACTTATGACCATACATACTTGGATATAAGAATAGTAGCTTAAGATTATTTGTTTGTTATGGTTTTGTAACTACGAAATTCATTTATTGAAAGACGAGTATATAATTGTGCATATCTAGAATAGACTCAAGAGCCATATTATTAACAATACCCATGTTCTATATGTTATAAATTTCATCTTCTAAAAAGTATACGAAATTAATTTTATAAATTCATATGTATAGGTAATTGTATTTGTTCACACATTATAATGTTAAACAAATATACCTATTTGAATGTTTGTATAATAAAAGTCGTTGCACTTGTGAAATTCGTAGTATATTTATTTAACACCATTCAAATATAAACTGCATGATAATAAAGTCATTAAATTTTATAAGAATGATTTTAAAGCAAAACTCAGTAATTCATTGATTCTCTCATATCTATCTTCTTTGTACTCTTCTTTTCCTTTCAAAATCTTGTATCATGAAAGAAAGCATAAACAAAAATACAGATCCCATGTCCATAGATCACACACACTCCTACCAATCCTATATTCCTATAACCAAAACAAATCATAAAGAAAAAAAAAACACTTGGTCCCATGCATATTATATATTATTTTTTTCAGGTATAAGAAAAATTATATAATTTTATTTGACACTATGCAGGGTCTCATTCTTGATCTGATGATGACTGTCGAGAAAATAAGCTGTTGATTTGGTATTTTTATTTATTATTATTATTATTGTTTTGGGAGTTTTTCCAGCAAGATCACAACACAAGGATGCCAATAGTTGACTAGATAATTTTGGTTTGACTGGATTGGATGAAGGACAAAGGCTTCAGAGGCTACAGCTGGAAAACGTAGGAGCAGGACAACAAGGTAAAATCGATCATTAGATTCCATTATTCCCTATGTTCCACACCCCCACAAAGTTAAAATATACATACAAATAACAATAATAATATAAATAAACAAAAGCTTTCTGCTTCACCATTTTTATTACACTATTATTACTTAAAAAAATGATCTTTCTTAAAGCAGACACACAACAACACAAGACATCATACCCTGAACTGCCTCCACACCCTACTCTCACACCCTTCTGAATCAATGCCCTACACGTGTCCCCTGTGGGCCCCCTCCTCACGGGTTGGATGGTTTGGAAGGAAGATTTGGTGGGGTCCACAGTTGATGAACAGTGGCTGAGGTTGATGAAGGATGATGGAGGTTAGGTGCATATAATTGAGGATTCTAAAAAGAAATGAAAGAGGTTAGTTGGCACTGAGTAAAATGAGTGTGTAACAGCAAAGAGAGAGAGAGAAAGACACATACATGGTTTTTTATATACATATGTATGTGTTATGTTACTTAGAACAGTTGGCAAATGTGTCAGTAAAAAAAAGAGAAATGAATAAAAATACTAAAGAAGTATGTTTGTTAATGAATACAAAGGGGGGCAAGCTTGGCCTTCAAGAGAAGAACCTCTCCCACTCCATCTTTTCACACTTTGCAAACAAATCTCACACGCCCTAAAAAGGAAGATTTATGCTTAAAATATTATAGAAACTTGAGTTTGAACTGCTTTGAAAAAATATATGGTAGGAGTTGAAGTGAAATAGTTATATTGTTGTTGTGATGAAGAAGATGGTTGGAATATAAAAAATATATACATTGGTTAATGAGAATGGATATTAATTTAGGGTAAACTGAAGCTGAAAATGATTACAAGTGTGGGAAGAGAAAAGAGTGATTAGGTTGTGCTTGTGCAATAATTTACCAACAGGAGCAGTTGGCAGTAGTTAGTGTGTCTTTTAAAATGATACATGTCACCTCATAGCTTGG

Gene Sequence:

>Vu_01605(+)

GGCAGGTACACAAAGAAAAGACTCTCTCTCCCTCTCACTCACATATTTTCTTTCTCTCTCTTCTATGTGTGTCTTTATCTTTCTAGCTTGGTGATAGTAGCAGTAGCTCCTGGGGGTGGTGGTGGTGGTGGTGTTGTGTTTTGTTGTGATCTATTAAAGTTAGATATTTATGCTACATTTTGATGTTTATGCTTAGTACCCAATTGGTGAAATTGGTCTAGCTAGCATTTGATGCTCCCGTCAGAGACACCCCAGTAAAGGGAACTCTGCTAAATTCTGTCTCTTTCAGTCATCGCAGGATTTGAGTAGAATTTGATGCCCTTGGTCGTGCCTTGTTCTTGGATTCTCATCCCAGAATTTAATTGCAAGAGTTTCAACAACCCCTCCTGTCCTATCTTTTAAATCAAAGAAAAAAAAAAGAAAAGATAGATACTTTGTTTTTGTTCACTCGTGTTGGAGCTTCTTAATTAGAAGGGTGTTTCCACTTTCAACCAAGCAAGAAAACACCACCACCAACAACACAGAACTCGTCTAGTGACAGTGCTAATCTTGCTTAACACCGATGTTTTTTTATGGAATGAGGGGTTTTAGATGTTGTTGTGAGGACAGAGGAGAAAAGGGAATCTGCTTTACTTGTAGTTTGATGAGCTGTTAGCTAATCTCACTGTCTATGTCCGCTTTATGCTCTGAAGACTGAAAGGTTCACTTTCTTGTCTGAGAGGAAGCATTTTTTCCCCCTTTTACTGAGCATTGAAGCAGTAGATTTGATCTTGGTTTAGGGTTTTTGAAGGAACAGGTAAAAAACGAAGCTGGTGACTGACTTGGAGATTATATTCCATTTACCTTTTCTTTTGTTTTTCATTTATCTAAGGCTACACAATGAGGGTTTTCTTTTACTTTAACTTCCTCTCAGTCCTATAAAGCTGCCAAGTTATTTGTTCCTTGTTTAGTCCTGCAAGATATCTCTCGAGCCAACTTAGTCAAAATTCACTTTACCCTTTAATCATATGCTATTGTTTATTTCTAGATGCAGCTCTGATGTGATGAAACTGTTTGAGTCTGATTGATTGGTGAATTATATATAAATAGGTTACTTTCTTGGTTGTGACTGTTTAGGGACTGTCGAGTTTGTTCAGATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGGTCTCAGTGTTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCCGTGTCTATGGCCAAGCCTTCTGATGTTGCTAACCCTTTTCTTGCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGATTTCTCATACCGACTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATTACCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTAGGGGGCATGGTCCCCAAGGTTCACTCCTATGCAAGCAGGGGCTTCTCAGAAATGGTTGGTGCTGCCTCTTTTGTCCAGCATGGGTCTGCTGATGTGGCTAACTCAGGGTACCCACCACATTATAATCCGATCAAGGACACTCAGATTAATGGTGAACAATCTCAGGTTGAGGATTCAATTCCTGAAGAGGAAGCACCAGGATCTGGTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGGTTTGTTCATTTCAATGTGATATCTCCAAGGACAAAACTTAGATGCACTTTCTTAAGTATTTCTTGTGTGTTGTTTTCCCATCTAAATTGGAGTTTTACTTCTTCTATCCACACAAAAAGATTTGTATTAAGATCAACATGCATTATCAGAGTGAAATTCTAATTTTACTTAGAGAACAATAGGAGAAACATCTAAGCAAGTGTATATATGTTTTGTCCTACATACTATCTCGTTTAGGACTTTTGGAATGTTTCATTGGTGTTGTTTTGTGTGGTTGTGAGAGCTAATGAAAGAAACGCTTTATGAGGTTGGATTAGAATGCTGAGAGTGAAACTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAACAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAGGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAACTTCATTCACGTGAGAGCTAGAAGAGGACAAGCCACAAACAGCCACAGTCTTGCAGAAAGAGTACCATCCCTGTCTCACCCCAATATTTGTCATGAAAAAGTTTGAAATCCTTTATGTATTTTTCATTGTCTAATTATACAACTTTTTTGTTTGCAGGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCTGGTTGCAACAAGGTGATTTGAATATTGTGATTGTGTTAAATGGTTTCTCTGAAAGTATGATGATGTCTTTGCGTACTAATTTTCTCTTTGGTTAAACCATGATGGTGTCTTTGGTTTCTGTTAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGGTATGAAAGTAGTGTCATAATTTATGATTTCAATTTACCATTTAAAAGGGAATAGTGCATAGTAAGAAAATTTTTTATGACAACTTTTTTGTCTGTTCAATTATTATGGTTTTGTGATTTGGTCAGTGAACTTATGAAAGAGATATTTTGCAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATGTGAGTGAAGGCCTTAACCTTCTTGGTCCATTTTCTATATTTTAACAGATTGAATTAAGATGATTTCATTTCTCTTCACTTAGATTCTTCAATCACGCATAGGACATGGAATTAGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCACTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGGTAAAAAGACTAAACATCTCTGAACACGTTACACTCTGATGAGTTTACTTTCTATGCACTGTTGTCAAAGTAAAAACAATCAATCAGAAATCATCCTTGGTATTGTTTTTAAGATAGTTAGTTAAATTCATCAAACTTAACTTTTGTAAATGAATGATAATGTAAAAACCCTTTACACTTTTTTAGGTGCATATTCTATTTACACTGCTCTAATCAACACCCTTTAGTTCTCAATTTTGAAAAATACTGATACTCTTACATGCAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGTAACAGTAGACAGAATCTCAGTTTACTTTTGGTTGTCTGCACAATCACTATCAAGTGTCTGATTCTTTGTAATTTATTGTTAAATTGAACAGGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTCTTATATAGCCATGTTACTACTACATCAACAACAACAAAGACTTTGGAATTTTCTTGTTGACTGCACAATTTAACTGAAGGTTGAAAATGGGGGAACAATAGAGAGAAAGAAAATAAAGGGTTTAGCTGTATAGGGTCCTTAATACCTAACTGTTGGCTCTTCGAAGTTTTAGCAGAAGATGACTTGTTAGATTTATGAATTGGAAAATGAGTTGCACATTATAATGTGTGAAATCTAGATGATGTAGAACAAGTTGCAATCAACGGTCTTGTTTAATGGCATGGAGAGCAGTGTTTTGAGGAGCATGCTAGTAAAGTGTGTGCAACTATCATTACTTTTGTTGAATTACTATTATTATTATTATTATTATTATGTATAGAGTTGCCAGGTTCAGATTTTTGAAGCACATTGTTTTCAAGTTTCAACAGTGTTGCAAGGGTTTATGGTGTTCTTATGTTTTTCTTTTCAAAAGAAAATGTAACTAATGAGAGAAGCTTCTTAGTGCATGCATCTATTTGCAAGGGTGAAAATGTTGCAACTTGTATGATGGTGGTGAGAGATTGTTTATGTAGATCAGTGCTTCAAATATTGGTGTTTCTTTTTTTTCATTTTATGATGTTCTTTATATAACGTGATGTGTTCTTCACTG