Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01604 LG1 18728036 18732149 PREDICTED: AP2-like ethylene-responsive transcription factor ANT
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, glucosinolate metabolic process, positive regulation of auxin biosynthetic process, gamete generation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, glucosinolate metabolic process, regulation of transcription, DNA-templated, positive regulation of auxin biosynthetic process, positive regulation of auxin biosynthetic process, maintenance of shoot apical meristem identity, regulation of transcription, DNA-templated, plant organ morphogenesis, regulation of transcription, DNA-templated, glucosinolate metabolic process, plant organ morphogenesis, regulation of transcription, DNA-templated, regulation of cell population proliferation
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 18728267 5_prime_UTR_variant
T/A 18728300 5_prime_UTR_variant
A/G 18728301 5_prime_UTR_premature_start_codon_gain_variant
A/T 18728368 5_prime_UTR_variant
T/C 18728435 synonymous_variant p.Asp11Asp
T/A 18728615 synonymous_variant p.Leu71Leu
G/A 18728698 missense_variant p.Gly99Asp
A/T 18728727 stop_gained p.Arg109*
T/C 18728815 intron_variant
T/G 18728832 intron_variant
A/C 18728833 intron_variant
C/T 18728847 intron_variant
A/T 18728914 intron_variant
T/C 18728953 intron_variant
G/A 18728997 missense_variant p.Met115Ile
G/C 18728998 missense_variant p.Val116Leu
G/*,A 18729234 synonymous_variant p.Val194Val
G/*,A 18729235 missense_variant p.Glu195Lys
A/G 18729300 synonymous_variant p.Glu216Glu
T/G 18729436 missense_variant p.Cys262Gly
G/T 18729437 missense_variant p.Cys262Phe
G/C 18729645 synonymous_variant p.Val331Val
G/C 18729654 splice_region_variant&intron_variant
G/A 18729674 intron_variant
T/A 18729873 intron_variant
T/A 18729879 intron_variant
T/A 18729880 intron_variant
T/A 18729901 intron_variant
A/G 18730072 intron_variant
C/T 18730097 intron_variant
A/T 18730134 intron_variant
A/G 18730138 intron_variant
T/C 18730260 intron_variant
T/C 18730408 splice_region_variant&intron_variant
T/C 18730410 splice_region_variant&intron_variant
A/G 18730481 splice_region_variant&synonymous_variant p.Leu394Leu
T/A 18730705 intron_variant
T/G 18730972 intron_variant
T/A 18730997 intron_variant
C/A 18731185 intron_variant
T/C 18731218 intron_variant
A/T 18731527 missense_variant p.Asn537Ile
C/T 18731528 synonymous_variant p.Asn537Asn
A/G 18732070 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01604.1
MKSMNDGNADDGNNHNWLGFSLSPHMKMEITSSADPPHHHHHHFYHHPQVSAAAAPCNTVPTGFYISPSHLNPSGICYGVGENGAFHPPLAMMPLKSDGSLCIMEALTRSQTPVMVPTTSPKLEDFLGGASMGAQEYGGHEREAMALSLDSVYYSSQNAEPEANRGHPSSLGLLSDPFRQQTHPYYSGLGIYHVEEEAKQPHVTVCSSQMPQVVEEGVACFKNWVPPRGYSSTQQNPEQQQVNNSSGMGEGHGTSGNAGVGCGELQSLSLSMSPGSQSSCVTVPTQISSSRTESVAGDAKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEAVEYNGVSSQQEAETVNNNENNEKGSSDWKMGLYHQQQQQSNNNCDMKTMKCGNYRGSAFSVSLQDLIGIDSVGSSQAMLEESTKIGAHFSNPSSLVTSLSSSREGSPDKTGPTMLFPKPPVGSKVVTSPIANGVSVSSWFPSQMRPVSMSHLPVFAAWSDT*


CDS Sequence:
>Vu_01604.1
ATGAAGTCGATGAATGATGGCAACGCTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTACTTCTTCTGCTGACCCTCCCCATCATCACCATCATCACTTCTATCATCACCCTCAGGTTTCTGCAGCTGCAGCACCTTGCAACACTGTTCCTACAGGCTTTTATATTTCCCCTTCACACCTTAACCCCTCAGGAATCTGCTATGGCGTTGGAGAAAACGGTGCCTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGATGGCTCACTTTGCATTATGGAAGCTCTCACCAGATCACAAACCCCAGTGATGGTGCCAACCACATCCCCAAAACTGGAGGACTTCCTTGGTGGTGCAAGTATGGGAGCTCAAGAGTATGGAGGGCATGAAAGAGAAGCAATGGCTCTGAGCCTTGACAGCGTCTACTATAGCAGCCAGAATGCGGAACCTGAAGCCAACAGAGGCCATCCTTCTTCTCTGGGCCTTCTTTCTGACCCCTTCAGGCAACAAACCCACCCATATTACTCTGGGCTTGGGATTTACCATGTGGAGGAGGAAGCCAAGCAACCACACGTGACAGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGTGTTGCTTGCTTCAAAAACTGGGTGCCACCAAGGGGATATTCTTCCACTCAACAGAATCCGGAGCAGCAGCAAGTGAATAATAGCAGTGGCATGGGGGAGGGTCACGGTACTTCTGGGAATGCTGGTGTTGGTTGTGGGGAGTTGCAGTCTTTGAGTTTGTCTATGAGTCCTGGTTCTCAGTCTAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCCAGAACTGAATCAGTAGCTGGGGATGCCAAAAAGAGAGGCTCTGCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGAGTGACAAGGCATCGATGGACTGGAAGATATGAAGCACATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCATATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACTCACATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAATATGAGCAGGCAGGAGTATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTACAGAGGAGTGACAAGGCACCACCAACACGGTAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAAGAAGCAGCTGAGGCATATGACGTAGCTGCAATCAAATTTCGTGGGGTGAATGCTGTTACCAACTTCGACATCTCAAGATACGATGTTGAGAGGATCATGGCCAGCAACACCCTTCTTGCTGGAGAGTTGGCTAGAAGAAACAAGGAAAGTGAGCCAAGAACTGAGGCCGTAGAGTACAACGGTGTGTCAAGCCAACAAGAAGCTGAGACTGTGAACAACAATGAGAACAATGAGAAGGGATCATCGGATTGGAAGATGGGTTTGTATCATCAGCAACAGCAACAGTCAAACAACAACTGTGACATGAAAACCATGAAGTGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGCTAGAGGAGTCTACTAAGATAGGTGCTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGACAAAACGGGTCCCACCATGCTCTTTCCTAAGCCTCCGGTGGGGTCAAAGGTTGTCACCAGCCCTATTGCTAATGGTGTGAGTGTTAGCTCGTGGTTTCCCTCTCAAATGAGGCCAGTCTCTATGTCACACTTGCCAGTTTTTGCTGCTTGGAGTGATACCTAG


Promoter Sequence:
>Vu_01604::LG1:18726036-18728036(+)
ATCGTATAAATTACTTTTAAAAAAATATCTTAAAATGTTTAAAAAATAAACTAAAATAATCTCCTGAATTAGTTCTAAGTTCTCTTAAGCACTCTTCCAAACATCTAAAAGTTTAAATAGATTGTTTAAGAACATTTTAGATAAAACCAAAGTTTGTAACTGAAATTATTCTAGCTAAAGTAAATTATCAAAATTTAAAAATAAATCAACACGTGAAAGTTAAAAAAGAAAAAGTTTGTAGGAATTTTAACAACTACGTTCACTACATAACAATTTCTAATTCTTGGACATGTAAGAAAATAATAAGAATTAAAAATAATTTCTAAATAAATTAATAGGTTTAGTAAGAAAAAAATTCTAAGACTACAATGAATCGGTTTAAACTACAAATAAATATAGTATCAATAAATTAAAGAAAATTAATATCAAATCTTATTAAACAAAGATTCTAAAAAAAAATAAGTTTTAAAGATATGTGAAGTCCGAATTATAAAATGATTTTTGCAAAAAGGTAATAAATTTATTTTTCTTTTTATTCAGTTTATTTATAATAAGTTTTATATGTCTTTGTGTATGAATAATTTTATCATGAATTTAATATAGTATTTTTAGTTTTTTCTTTTCATTTATTTTTTAATTTAATAAATTATTCGTGTAATAACAACCATATAAGTATGAAAGTGATTAAATAAAAATATTTTACATGTTTAAAATATTTATTTATTATCGTACAAATATTAATCTTTGTCATAAATATTAATATACTAGTTATACAATATAGATAGAAAGTACATAAACCTGTAAAGATTCACCCTGTATCACAATAACTTCACCTCCATAAGTGTACTTAAGGAGTGTACTTTATTTAACTTAATCACATCTGATTATTTAACCTCACGTGTATCTTCATTTATTATTAGTAGTTAATGGAGTAATGCTATATTATAAAAATAAAAAAATTAACATGCAATCTAAAGCATGGAAAAAAGTACAAATGTGTGATTTATCTTGTAATGTTATTTTGAAATGTTTAATTAACCTGTTACTCATTAACATAAAAAGATTAAGTATGTGTGTGTATATATATATATATATATATATATATATATTATTTATTATTACATAATTATTATATTCATAAACTATTGATTTTTTTTAAAAAAATCATTACATTTTTTTAATATCTAATTACCTGTAAACATTTATTTAAAATTAAAATATTATTTATTAATTTTAAAACATATAAATATTGTTTGTGTGGCTGGAAATATTATTGATTTATAATTTAAATTTATGTGAACATAAATTATAAATTAAGTGGAACAGATATTTTTATTTGCTATATGAAATAAATATAAAAGGAAAAAAAAAATAGAAGATGCTTTTAGACTTTGCAGTATGCAGGTGACACAGAATGGGCGTACTGTATGAAGTGACTGGATGGGCAGATAAGTCCGGCCCGTCAAATCTATGGCCCCTTCCACTGCACTGCTTGCAACCTTGTCACTGTAAAATAAAATATTATTTAAATAATTGAATAAAATAATTATTTTTTATAAATAATATATCAATTTATTTTAATGTACTATTTGTATAAATTATTGATTAAAAAAAATATTAGATATGGTGTGGTTAAATAATAACAATGTACTTTTTTTTTAGTACACCTGTTACATATATAAAATGTAAGAATATTTAATTATATATATTTTATTATTTTGTCTACCTGAGGTCTGAATCTTTTTCTATTTTCCTTCCGTCTATATCTTGGTTATGTGTGCAATAGATTCACCTACTAGCATTGAAGTTTTCAGAAGCTGTCCAAAAAAAGTTCATCACACCGTTACCATATTAGGCTCTTTCTTCTTATCCACTTTGCTATTTCATTCTGGGTTTAATATAGGGTTTAAGAAAAAGCTAAGTGGGGTGGCAGATTTTTCTTTTCTTATTTTTTATCAACAAAAAATATATAAGAAAAGAGAAAGAAAGAAGGTAAAAGA


Gene Sequence:
>Vu_01604(+)
AGCTTGTGTGTGTGTGTATATACATGCCCACATACCTACACAGATCCCTATGGAATGAAGTGGGTGCTCCCAGTTTCACTTGCTTCGTAACTTATTCCTTCTGCTTAGTTTAAAGAGACCAGTTTTGTTACGAGAAAGGAGAGAAAGAGAGAGTTTGCAAAGTTTGGTTCTTGTAGTTGTTGTTGTTCTTGGTGTGAGAAAAAACTTGTTTTTGCTAAACAACAAAAACCAAGTCTTCATTGTGAAGGAGATTATTACTACTACTATTGTTCTTGTTATTATTTTGATATGATTTGGTTCTTTCAAACCTTTTCCAAGTAATTGAGTCGAGAAAGGAAGAAAAAACAAGACAGGAAAAGAAGCTAAGATGAAGTCGATGAATGATGGCAACGCTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTACTTCTTCTGCTGACCCTCCCCATCATCACCATCATCACTTCTATCATCACCCTCAGGTTTCTGCAGCTGCAGCACCTTGCAACACTGTTCCTACAGGCTTTTATATTTCCCCTTCACACCTTAACCCCTCAGGAATCTGCTATGGCGTTGGAGAAAACGGTGCCTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGATGGCTCACTTTGCATTATGGAAGCTCTCACCAGATCACAAACCCCAGGTAGTCCTTCTTACCCTCTTCCATGCATTCAAAACTTTCCTTTCTTCAAATTTTCTCATCTCTTGGTTCTCATGGTACGATTTCAGTATTACCGAGTATATTTACTTAACTTTTAAACCAAAGTAAAACACTGATTTTGATTCAATACAAGTATGTTAAAAAGGGTAGCTAAGTTTTGTTTTTGATTTTATTGCTTTGCAATTTACGACATAAGTGTATATTTTAAGAGGGTTTTGTGGTCTTGTTGAAGTGATGGTGCCAACCACATCCCCAAAACTGGAGGACTTCCTTGGTGGTGCAAGTATGGGAGCTCAAGAGTATGGAGGGCATGAAAGAGAAGCAATGGCTCTGAGCCTTGACAGCGTCTACTATAGCAGCCAGAATGCGGAACCTGAAGCCAACAGAGGCCATCCTTCTTCTCTGGGCCTTCTTTCTGACCCCTTCAGGCAACAAACCCACCCATATTACTCTGGGCTTGGGATTTACCATGTGGAGGAGGAAGCCAAGCAACCACACGTGACAGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGTGTTGCTTGCTTCAAAAACTGGGTGCCACCAAGGGGATATTCTTCCACTCAACAGAATCCGGAGCAGCAGCAAGTGAATAATAGCAGTGGCATGGGGGAGGGTCACGGTACTTCTGGGAATGCTGGTGTTGGTTGTGGGGAGTTGCAGTCTTTGAGTTTGTCTATGAGTCCTGGTTCTCAGTCTAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCCAGAACTGAATCAGTAGCTGGGGATGCCAAAAAGAGAGGCTCTGCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGAGTGACAAGGTTGGTTTACTTCACTTCACCTCGTCCCTTTATCTCTCTAATAATTTCTTTTGCGGCAAAAATCTGAACTTTCATGTAAACTAACGAAAGTATTGCTGCTGTGCTGAATCTTGTTCTTCGATTTTCCATATAATTGTCATTACCTGATCCTCTCACTTTAGTTCCACTTTTTAATCATTTTGTACTTTATTTATTTAGTCAAGTTCATGGTGGTTCTACTTTTTTGAATTAACTTATTGTTTTGTTTGCCTTCTTTTTAAGCCAATTGTTTTGTGGTGATGTATTGATGTTTGTGTATCAGGCATCGATGGACTGGAAGATATGAAGCACATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGGTTAGTTTCCAAAAACTAGAGTCATTGATAATCTAAAAGCCTTTTATCACTTTGAAGTATTTCTCCTTGTTTTTGAGCTGTGCCCACTAACTTTCTATCACCTATTGTGTGTTCACAATGTGGATGACCGTTGACCACTCAACAAAACGTTGCATGTCACAGTTTATTTGGGTAAGCTACTACTCCTTTTTCAAGGGTCTGCATATTCAATGTTCTTGTTTTTTTTTTCTTTTCTAAATGCTAATTTGATAAGCGTTGAATTTTCTTTATGAACTGAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCATATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACTCACATAAACTTCCCGGTATGTTTCAAAAGTTAGCATTTCTATCTCGTAATCTTGTACTCCTAGGAGTCTCATTTTCTTTTCTATTTGGCAGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAATATGAGCAGGCAGGAGTATGTGGCCCACTTGAGAAGGTGCACCCATTATTATCATTATTATTGTGCTAAAAGCTATCGATTATTTTTATTGTTTAATGATGATGTTGGTGATTGCTTTGCAGAAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTACAGAGGAGTGACAAGGTTCAATGCTGTTTCTCTGCCACTTTTTTTATGTATTACAGAGATTAAACATGGTGGTTAAGTAGGCTAAATCCGCTTTTTCATTGTTGCGCAGGCACCACCAACACGGTAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTAAGTCCTTCCAGAAAGTTGTTACATTTCCTCGTACCACCTTGCCAAATCTTTCACAGCAATATCGGTGGTTATTTTAGCATTCAAAACCTGAAACTGTAACACTAATGTTTATGATGTATATATTCTTAGGACTTTGTTATTAATGCTATTATGCTGGTGCCTGGCAATGTTTTCTATAAGGCTGTTGATATGGCCACTTTGAACAGCAACGGGTCACTTTTTTTAAAGCTGTTCTCCCTTGAAAGATTAAAAAAGTGGTATCTAAATAGTAATATCTCTTCAAGAATGATTTCCAGAAAGTTCATTTTTTTTTTCTAAATACCAATGCCCTTTGGATTTTATATTTCAACTACATTCATGGTCATGCATAGTAAAAGACTATTTTAAAAGTCGCATTTGATGTTGATAGTGTATTTTTTTAATGAATTAAATTAGGTACTCAAGAAGAAGCAGCTGAGGCATATGACGTAGCTGCAATCAAATTTCGTGGGGTGAATGCTGTTACCAACTTCGACATCTCAAGATACGATGTTGAGAGGATCATGGCCAGCAACACCCTTCTTGCTGGAGAGTTGGCTAGAAGAAACAAGGAAAGTGAGCCAAGAACTGAGGCCGTAGAGTACAACGGTGTGTCAAGCCAACAAGAAGCTGAGACTGTGAACAACAATGAGAACAATGAGAAGGGATCATCGGATTGGAAGATGGGTTTGTATCATCAGCAACAGCAACAGTCAAACAACAACTGTGACATGAAAACCATGAAGTGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGCTAGAGGAGTCTACTAAGATAGGTGCTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGACAAAACGGGTCCCACCATGCTCTTTCCTAAGCCTCCGGTGGGGTCAAAGGTTGTCACCAGCCCTATTGCTAATGGTGTGAGTGTTAGCTCGTGGTTTCCCTCTCAAATGAGGCCAGTCTCTATGTCACACTTGCCAGTTTTTGCTGCTTGGAGTGATACCTAGAACTGGATCATGGTTTGGTTTGGTTTCATAAACGTGTTTGGAAGCTGGTGGAGAAGTAAGAACTCGTGTATGAGATGTGGAAGATAGCTTGTGAAAGGGAAGAAAAATATATGATGTGAAACCAAACACGCCATAGCCTATGTCATGTGTAATGTGTTAAATTTTGCATGTGAAATGGAGCGGGAG