Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01602 LG1 18659182 18663482 PREDICTED: growth-regulating factor 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to cold, response to gibberellin, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, glucosinolate metabolic process, response to nematode, leaf development, root development, leaf development, transcription, DNA-templated, transcription, DNA-templated, transcription, DNA-templated, root development, response to gibberellin, glucosinolate metabolic process, regulation of transcription, DNA-templated, glucosinolate metabolic process, regulation of transcription, DNA-templated, regulation of nematode larval development, regulation of nematode larval development, response to nematode, transcription, DNA-templated, response to cold
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, ATP binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, ATP binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/G 18659326 3_prime_UTR_variant
A/T 18659330 3_prime_UTR_variant
G/T 18659575 missense_variant p.Gln570Lys
A/G 18659578 synonymous_variant p.Leu569Leu
C/A 18660036 missense_variant p.Arg416Met
C/T 18660200 missense_variant p.Met361Ile
C/T 18660333 intron_variant
T/A 18660420 intron_variant
G/T 18660504 intron_variant
C/T 18660532 intron_variant
G/A 18660544 intron_variant
G/C 18660620 intron_variant
A/G 18660648 intron_variant
C/T 18660760 intron_variant
A/C 18660830 intron_variant
A/C 18661022 intron_variant
A/T 18661023 intron_variant
G/A 18661056 intron_variant
G/A 18661130 synonymous_variant p.Thr301Thr
C/T 18661149 missense_variant p.Gly295Asp
T/A 18661335 missense_variant p.Lys233Met
C/A 18661406 missense_variant p.Trp209Cys
C/A 18661410 missense_variant p.Gly208Val
A/C,* 18661434 intron_variant
T/G,* 18661435 intron_variant
A/T,* 18661456 intron_variant
T/A 18661558 intron_variant
T/A 18661561 intron_variant
C/T 18661761 intron_variant
A/C 18661802 intron_variant
G/T 18661863 intron_variant
G/A 18661866 intron_variant
C/G 18661902 synonymous_variant p.Leu202Leu
A/C 18662193 intron_variant
T/C 18662346 intron_variant
A/G 18663241 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01602.1
MDLGVVGLEGLVGSDSSCAFGSSLASDPETKHKWYGSGVLKQERSGTASEDEWRTSKVPKTDDNMSAASKAMLFHQRNSLLRSNVTLFSEGHNQPQMLSFSSPKSEPLMVDKASLNATLPFSYHQLSSYSRNTGYSSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRKALDSAAFCNFSSGLLRPNTLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTTTTTTTTTTTPPNASSNSIVVPGGNNNNTFAHNNVHHPLPSHSSPANTINRMFMSSKENSNNASERMQDGPALPMVPPTLELKPKDPFMIHKHQLPYDESSSRNNNEFGLVTSDSLLNPSQKRSFGSSSSQKDDSESQQQHSLRHFIDDSPKPQSHHHHHRSSVWPELDNMQSDRTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLRLSREIDPIQMGLGVGSGAPNESNTRQANWIPITWESSMGGPLGEVLNLSSTNNNSNGSDHCGKNTSALNLMKDGWDNSPPLGSSPNGVLQKTAFGSLSNSSAGSSPRAENNNIKEGASATTLCNAL*


CDS Sequence:
>Vu_01602.1
ATGGATCTTGGGGTGGTGGGTTTGGAGGGGTTGGTGGGTTCAGACAGCAGTTGCGCCTTTGGTTCTTCTCTTGCTTCAGATCCTGAGACAAAACACAAGTGGTACGGATCTGGGGTGCTCAAGCAAGAGAGATCTGGCACAGCAAGTGAAGATGAGTGGAGGACTTCAAAAGTGCCTAAAACTGATGACAACATGTCTGCTGCATCCAAAGCAATGCTCTTTCATCAGAGAAACTCTCTGCTGAGATCTAATGTCACCCTTTTCTCTGAGGGCCACAACCAACCACAAATGCTGAGTTTCTCTTCACCAAAATCAGAGCCTTTGATGGTGGACAAGGCCTCCTTAAATGCCACATTGCCTTTTTCTTACCACCAATTGTCTAGTTACAGCAGAAATACAGGTTACAGTTCGGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACGCCTTCACAGTGGATGGAACTTGAACACCAAGCTTTGATCTACAAGTACATCACAGCAAACGTGCCTGTACCAACTCATCTTCTCATACCCATCAGAAAAGCACTCGATTCTGCTGCCTTCTGCAACTTTTCAAGCGGCCTCCTGAGACCCAACACATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTAGTTGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCACCACTACCACCACAACAACCACCACTACTCCTCCTAATGCTTCCTCAAACTCCATTGTGGTGCCCGGCGGCAACAACAACAACACCTTTGCACACAACAATGTGCACCACCCTCTTCCATCTCATTCCTCTCCAGCCAACACCATCAATAGGATGTTTATGAGTAGCAAAGAGAACAGTAACAACGCTAGTGAGAGGATGCAGGATGGCCCTGCGCTTCCCATGGTGCCTCCAACTCTTGAGCTGAAACCAAAGGACCCTTTCATGATTCATAAACACCAACTCCCATATGATGAATCTTCCTCAAGGAACAACAATGAGTTTGGGCTTGTCACTTCTGATTCCTTGCTCAACCCTTCACAGAAGAGAAGCTTTGGTTCATCATCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCTCTCAGGCACTTCATCGATGACTCTCCAAAACCACAGTCTCACCATCACCATCACCGTTCTTCTGTTTGGCCTGAACTTGACAACATGCAGTCAGATAGGACTCAGTTGTCGATCTCCATACCGATATCTTCCTCAGATTTCATGTCATTCACTACCTCCTCACCCTCTAATGAGAAACTCACACTGTCACCACTAAGGCTTTCAAGGGAGATAGACCCTATTCAAATGGGGTTGGGAGTGGGAAGTGGTGCTCCCAATGAGTCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAAAGTTCTATGGGTGGCCCTCTTGGTGAGGTTTTGAACCTGAGTAGTACTAATAACAACAGCAATGGAAGTGATCACTGTGGCAAGAACACTTCTGCTCTCAACCTCATGAAAGATGGGTGGGACAATAGTCCTCCACTAGGGTCGTCTCCAAATGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGAAGCAGTCCAAGGGCAGAGAACAACAACATCAAAGAAGGTGCCAGTGCCACCACACTGTGCAATGCCTTGTGA


Promoter Sequence:
>Vu_01602::LG1:18663482-18665482(-)
ATATTTAAAACAATCACACCACACATTTAAGTTTTATTTTTTATACAGATCAGAAGTGTTATTTACAAGAGATAAATGATTCTATTACAGTAAACTGCAAAACCTTCTCTCTCTCAATGTTTTTTACCAAACATGTATGAACAAATGTTCATTAAAATTTGAAACCCAAATTAAAACTTAGGTTTTTGAAGGAATAAAGATGGAACAAGTATCTTTTGCTCTCCTTAAAAGCAGAACAAAACTGTGATCTATCACTATATTATTATATAGCAATGGTGGGAACACTAGCTATGCATGTGTTTACCTTTGAACTCAAGTTATGTCATTGCCCAATGAAAAGAGATATATTCATAGATCCACTCTACACATGCACACCTAATACCCTCTTATTTATTTATTTATTTATTACTCATATTACAAATTTAGTTCAAAAATGATTAAAAATATTACAATATATATAAATGGGTGTAATTTTGACTTTGAATTAGGGTTGAAAAATTACTTTTTTAACAATTTTTTTATGCTTAGGAAGAGAAAGAATGAGCATGAAATATAGAAATATCTGATGGTATATATGGACATGGGCAAAAGAAGAGAGTGAGGATTGAAAGAAGAATAAGACAGAGATGAGGTAGAATTTTCTGAGTGAGGATTGTGTCACACTGTCACGTGCCAATGCATCTTTGTTCATGCAACCCACCACCTGTTTGCTTTATTACCCTTTTAACTTAAAGAAAAGTGAGGCACATTGCAAGCCAAACCAGAACCATAATTGTTGCTTATAAAACTAATAACTACACTCTTTCTCTCTCTCTCTTCTTCTTTTATGTCCATTCCCATCCAACATTAATTACTATTATCCTTTCATCTTATGGTAATAGCCCTATTGCTTTCAACAGTTGTAGACTTCAACATGTTCACATTGAGTGGTTTTACTAGGTAATGAGGTGCTGAAAATAACACATTGTTGTGCAAAGTTTATCAAAAGAAAGAAGAACTTGGGGTTTAGATTAGTGAGATGGAAAAGAACAACAAAGGTTGTGGAACCAAACATGTTCACATAAAAAGACACTCACATCCTTCTCAGTACAGCTACATCCCATGGTTTGCTGTGTAGGTTTCCATAAATGCCCTCTCCCAGGACAGTCTAGAGTAGAGTAGAGTAGACCGTGACTCAAAACAAAACCAGTATACCATATTATAATAATAACATTAAATATTATCTTACAACAATATAAAAAACAATAGATATCATCATAAATAAGTAAATAAATATATATATATATACTCAATTATTTTGTCATCAAATTTGGTATATGGTACCATACAAATACACGATTGTTGGATTAGTATGTCCTACAAATCCTTTTTTGAAAATCCAAAAAATCTTTAGTAAGAAATACTCTAACAGAAGAAGCAAGTAAGACAATTATACCAGTCAAATTTTTGTGTATTAAATACTATCTGAACTTGAGAGTATCTTGTAAATGTAGTTGCCACAAATTATTTTTAGTGTTAAATATTTAACAAAATCTAAACTTGAAAATACTTATTAGACCTGAGGAATCCCGTGACAGTTGGTATACGAGAATAAAATTAAGAATAAGTTCGTATGTAAGAATAAAGTTTTTGTTTTGTTTAGTATTTATCATAACTTTGTTCAGAGTGAAATATAAGATTAATAACTTCAGGTGTCATTTAGGTAGTTTAACTGTTTTCAAAAGAAAATTTTGACACTTAAGATGATGTTTTTGAGTTGATTAAGATTGTCTTGAGTAGAAGAAAAATGTGATTTTGCAAGAGAAAGAGAAAATGATGATATTTTTGTAAACCATGTCGAGTCAGTTTCTTGCTCCCCACCAGTTTCTCTCTATCTCTCCAATTATTTTATCTTTGCCAAGACATCAACTCCCAAAAAAACAAAACCAGTCTGGTTTCCGGTTTCCAGATTCAGCTTAGCTTAGCTTTAAGGTGTCAAGCATATCTTCTATTTCTACTTC


Gene Sequence:
>Vu_01602(-)
ATCCCTCTTCCACAGTCACCTCTCTCTTTCTCTCTCTCTTCTTCAATTTCTCTCTCCACCCACATGAGATGTGCCTTACTTTTCCAAAGGGAGCAGCAACAACTTGTGTACTCTACTCCTTGTTGTTGTCCACAACCTCTGAGGAAGAGATGCCCCATCACCAACACTTCCCTTGTTCCTTGAAGCCTAGTGTTGTTAATGCTATTATCAGTGTCTAGTTTTAGTTATCTGTGTGCTATTTTTTTGTATTTGTTTTTGGTTCTTTCTTTGTCTTGATGGATCTTGGGGTGGTGGGTTTGGAGGGGTTGGTGGGTTCAGACAGCAGTTGCGCCTTTGGTTCTTCTCTTGCTTCAGATCCTGAGACAAAACACAAGTGGTACGGATCTGGGGTGCTCAAGCAAGAGAGATCTGGCACAGCAAGTGAAGATGAGTGGAGGACTTCAAAAGTGCCTAAAACTGATGACAACATGTCTGCTGCATCCAAAGCAATGCTCTTTCATCAGAGAAACTCTCTGCTGAGATCTAATGTCACCCTTTTCTCTGAGGGCCACAACCAACCACAAATGCTGAGTTTCTCTTCACCAAAATCAGAGCCTTTGATGGTGGACAAGGCCTCCTTAAATGCCACATTGCCTTTTTCTTACCACCAATTGTCTAGTTACAGCAGAAATACAGGTACTACTTGATTATGGGGTTTATCTCAGGAAAATAATAATCATTAATTGTTAATTAATAAAGGAGTGTTCTTTTTCAAAGGGTGTGTTTGGATTTGGATTTGGAATATGGTATCCCTTGTGGGGAGCCAAAATATTATGTGGGTTGTTACGGTCTGATTCTACAGTACCGGTGGAGGGTCTTTTCATGGAAATACATGAGTGGTCTCTGTTTGTGAGTCATGTCACAAGAAAGTAAAACAAAAATTCCTCCCTAGATGTGAAATCTTCCACTTCTTCCCGTTTTAGGAAGAGGGATTTTGGTAAAAAATTTGCACGGTAAACTAGAGGGTACCAAATGAGAAAAACATATGAAGAGCCTTATATGAAAAAAAATAAAGTCCAAAATTTGATTGGTCGTGCCAAATAGTATAGTCTCTTTCCCTAAAAAAATATCTCTGTTCCACTTTTCATGTCTTCCTCACACGAAAAATAAAGGTTGACTTGACTGTTTTTTTTTTTTTGAAATCAAAGGAGGTAAAGAAAATCAAATCATTGAAGGTTTCACGCCATTAATTGAACTTCTACCACCTCTCTTTTGGCTGTTTTCTTTTGAGATAGGAAGTGACTTTTTTTTTGTGTGTTCTGTTTTTTTAAAGTGGTCAATTTCGACAGTGTTCGCATGTTTTTTTGACCTTATGTGTGTTTATATGTGTTCGCAGGTTACAGTTCGGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACGCCTTCACAGTGGATGGAACTTGAACACCAAGCTTTGATCTACAAGTACATCACAGCAAACGTGCCTGTACCAACTCATCTTCTCATACCCATCAGAAAAGCACTCGATTCTGCTGCCTTCTGCAACTTTTCAAGCGGCCTCCTGAGACCCAACACATGTATGTAATGTAACACTTTTTACTACCCATAAAACAAAAAGAATCAGATAACTTTGGTCTATTTTAGTATGATTTAAAGGACTGATTTAATGTATTGTAGTTATGTTTATGAAGACACTGTATAAAAGAATCACAAAACTCATACTTTTCTTTGAATATTCTGGTTGTGTTATTTAATCAGGGATAGATTGTTTAATCAGAAAACTCATACTGTCTTAATATGAGCAACCAAAGTAAGAATTGTTGAATAAATTCACGAGTATAATAGTGATGATAATGTAAAACAGATTTATGCTCTTATCCAGACACAATTCATCTATGTGAGTGAGTATGACTTGTATGTAAGTTGATTATTGTGAAAGTTAAACTTAACAGAGGTTTTTGATTGAATATAACAGTATGAGTTCATCTGGGATATATTTGTCTGGTGTGTTGATGATTATGATGATGATGATGTTGTTGTTTTGTGTGGCAGTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTAGTTGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCACCACTACCACCACAACAACCACCACTACTCCTCCTAATGCTTCCTCAAACTCCATTGTGGTGCCCGGCGGCAACAACAACAACACCTTTGCACACAACAATGTGCACCACCCTCTTCCATCTCATTCCTCTCCAGCCAACACCATCAATAGGTCAGTCACTCACCAACTATGACTAATAATCACAGTTTATTTTTCATGCATTGTCATTTACATTCAACTAATCAGAAATCTTGTTATGTATGACTTTTAAGGTGGTTGCTGTAAAAGCTTACAAACTTCTCATGTGTATGATTGAATAACTGTGTTAGAGTCCTTTACTCTATCAGTGCATTCAAAGCTCAATTTGAGTGTGGTCCTAGAAAATATTTTCAAATACTCTTCCAATTTATGGGAACATATTGTGGGGATATTGAAAGTTTGACTGCAGTTCTGATATAAGTCACTTTAGTACTTAGATTTATAAGATTCTAAATTTGGCCCCAAGTTTTGTATATCTGTCATTCATTTTAGTGCTTTTCTACTGTGTTTTCCAACATGGGGGATTGGTATTTTCCTAAAGGGATGGGTAAAGTGAAGGAAATTTTAAAGTTGGAACTTGAGGACTAAAGTAAGAGTTTCCTCGTTGTGGTTTGTTTAGGTAGTGTGTGCAGATCTATGTAATATATTTTTGCTTGGTGTGTAGGGCTTTAGGACTTTGCACAAAATAGAATCAAAGAATCTAGTATTCCATCATCCTTTTGGGCAGAAAGGGACTGGTCATTTAAATAGTGGTTGAGTTGAGATTCGTGTTAGGGAGAGGAAAAAAAAGATGGTTCAAATTTTGTTACTTTATGTGTGTTTTAAAGATTGCTTTTGATTCTTTATGGAGTTTCTTTTGGTGCGTTTTTCCTTTGCATGCAGGATGTTTATGAGTAGCAAAGAGAACAGTAACAACGCTAGTGAGAGGATGCAGGATGGCCCTGCGCTTCCCATGGTGCCTCCAACTCTTGAGCTGAAACCAAAGGACCCTTTCATGATTCATAAACACCAACTCCCATATGATGAATCTTCCTCAAGGAACAACAATGAGTTTGGGCTTGTCACTTCTGATTCCTTGCTCAACCCTTCACAGAAGAGAAGCTTTGGTTCATCATCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCTCTCAGGCACTTCATCGATGACTCTCCAAAACCACAGTCTCACCATCACCATCACCGTTCTTCTGTTTGGCCTGAACTTGACAACATGCAGTCAGATAGGACTCAGTTGTCGATCTCCATACCGATATCTTCCTCAGATTTCATGTCATTCACTACCTCCTCACCCTCTAATGAGAAACTCACACTGTCACCACTAAGGCTTTCAAGGGAGATAGACCCTATTCAAATGGGGTTGGGAGTGGGAAGTGGTGCTCCCAATGAGTCAAACACCAGGCAAGCCAATTGGATTCCAATCACTTGGGAAAGTTCTATGGGTGGCCCTCTTGGTGAGGTTTTGAACCTGAGTAGTACTAATAACAACAGCAATGGAAGTGATCACTGTGGCAAGAACACTTCTGCTCTCAACCTCATGAAAGATGGGTGGGACAATAGTCCTCCACTAGGGTCGTCTCCAAATGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGAAGCAGTCCAAGGGCAGAGAACAACAACATCAAAGAAGGTGCCAGTGCCACCACACTGTGCAATGCCTTGTGAACCACAACCACAACAACTTTAAGAAGGCATGATGGAAGGGAGAAGAAGAAGAAGAAGAAGAAGAGGAAGGAGAAGAAAAGAAAAGAACTTTGTTCTTTTGACTTTAATCATTAATGAAGTTTATATAGTATTATAATATATAAATACATATGGTAATCTTAGAATTTGGAAATATGTGTTCTTGTTTATTAATACCTTGCCCTCATCATAATTTGGATGTGTAGGTAGGTTTTTGGTTTGCTTGACTTTAATTTGTTTCTTTCTATTCATGCATTTTGGC