Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01567 LG1 18238578 18240582 transcription factor bHLH84
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root hair initiation, regulation of transcription, DNA-templated, root hair initiation, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, root hair initiation, response to auxin, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, root hair initiation, response to auxin, regulation of transcription by RNA polymerase II
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
G/T 18238636 missense_variant p.Ala340Asp
T/C 18238782 splice_region_variant&intron_variant
C/T 18238893 intron_variant
G/T 18238902 intron_variant
A/G 18238906 intron_variant
T/A 18238941 intron_variant
A/T 18238951 intron_variant
T/A 18239091 intron_variant
T/A 18239177 stop_gained p.Arg267*
G/T 18239184 synonymous_variant p.Gly264Gly
A/T 18239293 missense_variant p.Ile228Asn
A/T 18239494 intron_variant
T/A 18239519 intron_variant
A/G 18239559 intron_variant
T/C 18239560 intron_variant
A/G 18239615 intron_variant
G/C 18239646 intron_variant
G/A 18239680 intron_variant
T/C,* 18239713 intron_variant
T/C,* 18239714 intron_variant
C/G 18239730 intron_variant
G/A 18239757 intron_variant
G/A 18239762 intron_variant
C/T 18239778 intron_variant
C/A 18239780 intron_variant
T/A 18239781 intron_variant
T/G 18239791 intron_variant
T/C 18239898 intron_variant
G/T 18239900 intron_variant
A/T 18239950 intron_variant
C/T 18239988 missense_variant p.Glu199Lys
C/T 18240086 missense_variant p.Gly166Glu
T/C 18240120 missense_variant p.Asn155Asp
C/T 18240137 missense_variant p.Cys149Tyr
A/T 18240186 missense_variant p.Phe133Ile
T/C 18240197 missense_variant p.His129Arg
T/C 18240223 synonymous_variant p.Ala120Ala
C/T 18240246 missense_variant p.Asp113Asn
A/G 18240511 synonymous_variant p.His24His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01567.1
MEPVGAFPDGEWDCFRRMFGIEDHEHDFTQEFPLLLGGGDELNIVTQHANFCAAPEAVENELMFYSLDAHNNSNSSQYISQESSYSNSSNCSGDDTVFIANPGSSNYYFCYPDHMLADNACVYSLDEKHFAPFAPSLANIATQESVKLCEDLASNRLENFECNQIGPVVFPSKRRLDVPAEGKINNRSENHKKKARVLEDVQGCMKNSTWSKKNQKHDSNREDAEETIAGSDGQSSSSNMSEDDNKENIGGATSESKSVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGINLNMKNSLPL*


CDS Sequence:
>Vu_01567.1
ATGGAACCTGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCAGAATGTTTGGCATTGAGGATCATGAGCATGATTTCACCCAGGAATTTCCTCTTCTGCTTGGTGGGGGAGATGAACTGAACATTGTAACACAGCATGCCAATTTTTGTGCTGCTCCTGAAGCTGTTGAAAACGAGCTGATGTTTTATTCTTTAGATGCTCACAACAACTCAAATTCTTCGCAGTATATTTCTCAGGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTGTCTTCATTGCCAATCCGGGTAGCTCAAACTATTATTTTTGTTACCCTGATCATATGTTAGCAGATAATGCATGTGTATATTCCTTGGATGAGAAACATTTTGCCCCTTTTGCTCCATCTCTTGCTAACATAGCAACCCAGGAGAGTGTGAAGCTGTGTGAAGATTTGGCAAGTAACAGATTGGAGAATTTCGAATGCAATCAAATTGGACCTGTTGTTTTTCCTTCCAAGAGGAGGCTTGATGTTCCTGCTGAAGGTAAAATCAACAACAGATCAGAGAATCACAAGAAAAAAGCTCGTGTTTTAGAAGATGTGCAAGGATGTATGAAGAACAGCACATGGTCCAAGAAGAATCAGAAACATGACAGCAATAGGGAAGATGCAGAAGAGACTATTGCAGGATCAGATGGACAAAGCTCTAGTAGTAACATGTCAGAGGATGATAACAAGGAAAATATTGGAGGAGCTACTTCAGAATCTAAATCTGTTCTCAACTCAAATGGCAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGCCTGTATGCAAGGAAAAGAAGAGAGAGAATAAATGAACGATTAAGAATCCTACAGAATCTTGTCCCCAATGGAACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGGCTTGACATTGGAATCAATTTGAACATGAAGAACTCCCTACCACTCTGA


Promoter Sequence:
>Vu_01567::LG1:18240582-18242582(-)
TAATATTATACCAATGAAAACATCTTACACCTTGTATAAAAATAGTTTACTTTTTGTTTTTTCAACCAAACATATACAAGGCTATGGGTTTAAGCTTGCTAATTCTATACACAGCTTTTCTATGATTATCATAACCTTTACTAATCTACATAGACTAGTTGTGACATAAATTGTTCTACTATTGCTAAGTTAATTAACATTTTCGGTTATATTTTGTATAACCTTCCTAAGATTATTAAGGAAAACCATATTTTTCCAAAGCATTGTTCAAGCTTTTGTTTAAAACCACTCCAGGTATATATCTAATCATAACCTAGTCAAACTATTATATGTATACGAGGTGCAGAAATTATAATCCTGCTACCTAGAATAAAACTTGGCTATAATATATGCGAAGTGTAGATAAGCGATACAGCCTGGAGGACATGATATATAAGATACTAAGTCTGGAATAAGGCTAAACAAAAACCGCTCTGTTCATCATTATATACTATATAAGATACGGGAATCCTTAAACATAATGGTGTGTGACAACATTTCTCAGAAGTGAAAAATCCTTGTTCAGTGATGTTAATGTTAAAACTGAGAAACAAACACAGTCTCAGATTGTTTTAACAGACAGTTATTCTAGTGAACTTTTGAACACTTTTTACGTCAAGCCTATGTTATTATTGGACAACAATACCTTACATATGTTTAGTATAGTTTATGAAGAGACAGTACTACTTGGCCAAGAAAAAACAACACAGCGACGTAGTTGGAGAACAAACTCGATATCATTGACTAAATTAGAACAATCACGCATATGTGGTTTCTAACTTTGTTTTTCACGTTAGTAATTTTCACCAAACACAAAACATGAGTTACTAGAGGTGAAGTCTAGTTAAAAAATACAAAATTAAAGAAACTTTACATCTAATTCAATCTTACAAAACTGATTTTTAAGATAAAGTTTATACTTATTTATATACTGTAAATTTATCTTATCTTTAGTTGACATGGGATCACCACCTAACCATCCTTAGAAGTGAATCTATAATATATAAATGTGTGCAAACTTATTTTTAAAATTAGTTGTAAAGTTTTACTTATCTAAATTTTATTCTAACGATATTTGTTATTTGTTGGATCTATCATGTATCATGACACTTCTATCAGACTGAGATCGAACTAGTGCTAATATCTAGTCTCACCCTTTGAATGTGTTAAAGATCTCCATCAACTAAAATCTTTGTAAAATTGAGTTAGATTTTAAGTTTATTTCTTATAACACAAAAAATGCATAAAAAGATGTATATATGTTTGGTTGATAAATGGTGCAGACATATTGAAGCAATGGTGAGCTTGTTACACCAAGGAGACAAAGAGCGTTGTACACGGTTGATGTGTCGGTCCATGAAGTGGTTTAAAGAAAGTGAGATCATCCCACGATGTAGCCGTCCATGGACCTTAAATTTTCTATTCCCTCACAGAATTCCTTTGCGTTTATTATATTGATATATGGGACTCCCACGTTCGTTGTTCAACCTCAACCACGCGCATGCTAAGTTAACTCCACTTCTAACTCCTAACTACATCACTGTCACCATTAATTAACACCCTTATTAATCATTACTTAGACCCCTTTGCTGTTTTCAGCACACTTTTATTCAGTCTTAAGCTGTTTATAAAGCCCTTCAAAAATTATCATTATTCTAAATTATCACGCATGAACTTGGTCCCATATGAGTTGTACTTTGCCCTTCAGTGGACTCCTGAGTTCAGTTACAGAGAATTAGGACCTATCCATGACACAATGATTACCAATTTAAAATGCTATTTGTAAATGAAGTCAATGCTTACACTAGCACTTTTCTTGGGATTCACTATAAATATGTCTATTGTTTTTGCTTATGCCAAGCCAACATTTTATTAGCTTCAATTCTCGTTGCAGTGGCATTGGACCACACAAGAAAAAAACCAACCCTTTTGCCTTTCTTTTTTCCTAAACACACAACAGA


Gene Sequence:
>Vu_01567(-)
ATGGAACCTGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCAGAATGTTTGGCATTGAGGATCATGAGCATGATTTCACCCAGGAATTTCCTCTTCTGCTTGGTGGGGGAGATGAACTGAACATTGTAACACAGCATGCCAATTTTTGTGCTGCTCCTGAAGCTGTTGAAAACGAGCTGATGTTTTATTCTTTAGATGCTCACAACAACTCAAATTCTTCGCAGTATATTTCTCAGGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTGTCTTCATTGCCAATCCGGGTAGCTCAAACTATTATTTTTGTTACCCTGATCATATGTTAGCAGATAATGCATGTGTATATTCCTTGGATGAGAAACATTTTGCCCCTTTTGCTCCATCTCTTGCTAACATAGCAACCCAGGAGAGTGTGAAGCTGTGTGAAGATTTGGCAAGTAACAGATTGGAGAATTTCGAATGCAATCAAATTGGACCTGTTGTTTTTCCTTCCAAGAGGAGGCTTGATGTTCCTGCTGAAGGTAAAATCAACAACAGATCAGAGAATCACAAGAAAAAAGCTCGTGTTTTAGAAGATGTAAGTTTTGTCTCTGATTTCTCAAGCTAAATTAGTTTCCAAAATTACAAATGATTATTACATTAACTACTTAAACGTCATACTAACAACAATGTCTGATTGATTAATGATGTAAAATTTTCTCACTTAGTGTTATTAGGAATTTAAGTATGAGTGTTAAATTTCACATTTGACAGAAATTAAAAAGTTGAACATCACTAGAGAGAGAAAACCCATAAAGCCACTCTCATAAGATTTTGGATGGAAGATGGTGTCAATTCTTTGTATAAATTGGATCGAAATCACATTTTATATAATCTTTCCTTAAGTAATTTTTCTTCGAAAAAAAATCTATCACCTTTTATTCTGATGATTGACTTTAATCATTTAAGTTTTATATTGGATGAAAATGAAAAAGTGAGATTAATCTCTCGGAAAGACTCATAAAGTGCATATAAAATTGAAGTACTTTATCAATCCTTGAAATTGCATAATAAAGATTAGCATTTTCAAATATCAATGATTAGAGTCATGTTTATGTGATTTTAGGCTAAAATTGATCAAAACTTAATATTTGGTCTACATAGAAGGTGCAAATTTATAACAATCTTGTGTGTTTCAATATCAGGTGCAAGGATGTATGAAGAACAGCACATGGTCCAAGAAGAATCAGAAACATGACAGCAATAGGGAAGATGCAGAAGAGACTATTGCAGGATCAGATGGACAAAGCTCTAGTAGTAACATGTCAGAGGATGATAACAAGGAAAATATTGGAGGAGCTACTTCAGAATCTAAATCTGTTCTCAACTCAAATGGCAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGCCTGTATGCAAGGGTATATATATATATATAGACATATAATCAGTCACTTCAAATGCAAAACCTCTTTTCATTTCATGGCACTTACACTCTTAAATCTTGCAGAAAAGAAGAGAGAGAATAAATGAACGATTAAGAATCCTACAGAATCTTGTCCCCAATGGAACCAAGGTAAATAATGTTGATCTAACTCTTGTTTCTAATATTTGACAAAAAATATATGAAATTGTATCTAACTTTATGCGTAATGGAGTTTTGTATTGATTTCATGGATGGATGTGTGTACTGCAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGCTCCAAATCAAGGTATATACATAAGAACAGCAGATATAGAACTGAAAACCATGTTTCAAATTTGGAAAGATTAACCTTTATACAATCAAATTGTAACAATTTTGTCTGGTTTTTTCTGGTGTAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGGCTTGACATTGGAATCAATTTGAACATGAAGAACTCCCTACCACTCTGA