Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01565 LG1 18221472 18222869 PREDICTED: LOB domain-containing protein 39-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   plant-type secondary cell wall biogenesis, response to nitrogen compound, organelle organization, protein-containing complex assembly, response to light stimulus, regulation of gene expression, protein-containing complex assembly
Cellular Component   is active in   cellular_component
SNP Position Effect Amino acid change
T/G 18221762 missense_variant p.Glu73Ala
G/A 18222156 intron_variant
A/T 18222161 intron_variant
G/C 18222193 intron_variant
A/G 18222216 intron_variant
A/C 18222240 intron_variant
T/G 18222262 intron_variant
A/G 18222385 intron_variant
C/T 18222410 intron_variant
T/A 18222456 intron_variant
C/T 18222508 intron_variant
T/C,* 18222568 intron_variant
C/A,* 18222573 intron_variant
G/T 18222657 intron_variant
G/A 18222660 intron_variant
G/A 18222667 intron_variant
A/T 18222757 missense_variant p.Phe38Tyr
G/A 18222761 missense_variant p.Leu37Phe
T/C 18222798 synonymous_variant p.Gln24Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01565.1
MSCNGCRVLRKGCSETCPLRSCLQWIESAESQRHATLFLAKFFGRTDLMSFIASVPQTRRPALFQSLLFEGCGRTVNPVNGAVGLLCSGNWHLCEAAVETVLAGGVLRAQPDAVAGASTGIRRPFRPLRLEHDAREMNENSSSLMNRAEEQETVRYGGHKKNQILNLFM*


CDS Sequence:
>Vu_01565.1
ATGAGTTGCAACGGTTGTCGAGTGCTGCGAAAAGGTTGCAGTGAAACATGTCCTTTGAGGTCGTGTCTGCAATGGATCGAATCCGCTGAATCGCAAAGACATGCCACTCTTTTCCTTGCTAAGTTCTTCGGCCGCACCGATTTAATGTCCTTCATTGCTTCTGTTCCCCAAACCAGAAGACCTGCATTGTTTCAGTCTCTGCTGTTTGAAGGGTGCGGGAGAACGGTAAATCCGGTGAACGGCGCCGTGGGACTTCTGTGCAGCGGAAACTGGCACCTGTGTGAGGCCGCTGTGGAGACCGTGCTCGCCGGAGGCGTTCTTCGAGCGCAGCCGGATGCAGTGGCTGGAGCTTCCACTGGTATACGCCGCCCTTTCCGGCCACTAAGATTGGAACATGATGCGAGGGAGATGAACGAGAACTCGTCAAGTTTGATGAACAGAGCAGAGGAACAGGAAACGGTGCGTTACGGTGGTCACAAGAAAAATCAGATCTTAAATTTGTTCATGTAA


Promoter Sequence:
>Vu_01565::LG1:18222869-18224869(-)
TGTGCAGTTAATTTTATTATTTACATAACAAACTCAAACCTGTTTCCACATTCTTTTAATGATAAATTAAATTATAAATTTATTAAAAATTAATATAAAATTATGCTATACATTTTACATTAGGTAAAAATATATGATTAGATGCAATTATTATTGGTTAAAAATTTCCTTTTCATAAATCTATTAAAAAAAAGGTTATTACTCTCCATACCATACTCTTAAAAATGATATATTGCATTTTTGTGAGTAAAAGGTTGGCATCCACTCATTTCCTTTACATTACAGGTGGCTTGTATAATGACCACTGAAGAACACACAACACAACGCACTTCTTCCTTAAGTTGTTTGGACGTTGGACCTCAAAAACACGTTTTATGAGAGTGTGCTTCTGTCTCCATACTGTGATGCCGTCCATTTCATATTTGCATCTCTTTTGTCTTCAAATCCACACACACCTTTCCTTCCTCTGCTACTTCACCATATTTAACCCATCAACTTTCATTTTCTTTCTTTAATTGCTTTCATATATTCTGTCTATCAAAATGTAAAATACTTTAAAAAAAATCACAAAATTAATTAATATACTCAAGTAGCTGTTAAAAATGTTTTTCTTTTATTTAAGTATTTTGTTATCAACAACGTGATTGATATTTTTTTTTCTCAATTTATAGTTTAACTTGTTCTCTTTATAATATTTTTAATTTGTTTCTCGAAAAGATAAACTGACTAACAAGTTAAAAGAAAAATGATTTAATGGATGAATTGAAAATAGAAAAACAAAAATAATAACCATATTTAATAGTAAAAATCAATTTAAAATATACTAAGCAAATTTGAACAAAACTTTTTAATAAAATATAAGTTAAAACTACTTAAATTTACAGTGTTTAAAATTAATAGAGAAACATAAAAATTATTTTAAGATTATATATCATAAAGATAAAAAATATTTTGTTTTATGTTTTCTTCATCCTAATCAAATAAAAATTTAATAAAGTATTAACTTTATAAAATCTTACAATTTTAAAAGTAACCTATTACTGTGAGAATTAAAATGAAAAAAAATAATTAAAATCTTCATTTTCCCTTGGTTACTTCTGGGAGTTTCTTCTGGTATTCTACATATTTCTTAGAACACTTTTTTGATAACTTTTGAAGAATGTATCTTTTACCGTTTACAGGTTTCGTTGAAACAAATGAGATACGATGAAGGTGAAATGTGATGGAAAAATGAGATTCGTAAAAGATAGACAATAAGGCCAATAATATTGACACATCCTTGTTTGTTTGATCTTTCCATCACTTTATTTTAGTATTTTTTTTTTCTACAAAAGTATTTTTAATGAAAACTAGTTTTAGTTAAAAATAACAGAACGGTGTTAGGGAAGAAACAATAGAAATACAAAATCTCATGAAAAATAAATATTAGTGTCTATAAAAGAAAGATGTTTGAAAAAAATGAGACGAGGGCAAAGAGAGGGGTAAAATTAGAATTTTGTGAGAAACAAAAAGATAGAGGTGGTGATATAAAAAAGGGCAAAATAGTGGGCCTTAAAGAAAATTGAAACTGGCCTGCATAAGTGGGCCAGTAGCATCTTCAACGACCCAGATAGAGAAAAATGTAATTTGAATCCATTAGAAGAATAAAATGAAATAAGAATGGAGGCATGTGAAAAGTCTGAGAAAACACTTCTTATTCCTCATCATCACAACAAACAATAAAGTCTTATAAATTAATTTTTATATAATAAGCATTAACCTTTTTAATTTATAAAATTAAATAATACTTTATGAGTTAAAAAAGAAAGAAGCTAACCCACAGAAAAAAGCACCATGAAAATCAAACTCAACCCGAGTTAGTTATTCCCTAATTCTAACTCCTTTCCGCTTTCCCACGCTCCTTAATCACACAGCAAGTAAAGTGCTGACACAAAAAACGAATCGTCTGCTAAAACTCGGAAGAAAACCCAAACAAGACATCAGAGGAAACAATCTGTGAA


Gene Sequence:
>Vu_01565(-)
ATGAGTTGCAACGGTTGTCGAGTGCTGCGAAAAGGTTGCAGTGAAACATGTCCTTTGAGGTCGTGTCTGCAATGGATCGAATCCGCTGAATCGCAAAGACATGCCACTCTTTTCCTTGCTAAGTTCTTCGGCCGCACCGATTTAATGTCCTTCATTGCTTCTGTTCCCCAAACCAGAAGACCTGGTAATCCAAACACCTAACCTACTACCTTCTACTGTACTCTCATTCTTTCATTCTACACTTGTGTTCAGATTTTCTGCTTCTCTACGTTTCAAAAAATACTCTATTTAAGGATGTTTAATTCCTAATTTCATATAAATTTATTAATATATATATATATATAGATCAACTTTATTCTTTGGAATTAGGTATATATAAACCAGTCCTTGGATATGTCTGATCAACATTACGTATCTGTTTGAGTAAATATATTTTGAGATATGTATAATTCAAGAGGTGATTAAGGTTTGTGTGATTCTCTTTTTAATTTTTAATTTTAGAGTTTTTACTGTTGTTTTATAAAAATTTATACTATCCAGAGATCAACTTGTCATCTAAATTTTTTTAATTATGTTTAGAGCAATTATATTAAAAATTAAAACAACAATTACATGATATTTTTTTCATCTTTATGTTCTTTTTCTTCTTTCCTTGTTCACTTTTTCCTTAACTTCACTCTTTTCCCTGCCTTGCACCACCTTCTTTACTACAACATCTCAAACTTTTTAGTTATATTAAAAAAAAAAAGGTAAATATTGGTAGTGTGATTAAAAAGAGTTAAAAGTATTTTTTTAAAAATTTTAATACAAAAATTTACTTCTCATTGTGCCCTATACTATATAATTCAGATAGTCAAACTGTGTTGTTTTATAATTTTTAATGCATTTTTTACTCAAAGTTTTAGTAAAGACGCTATTAAATAGAAGAAGAAAAATAGAAAATGATTCTAAAAATAGAAAAAAAAATACATACTATAAAATGATTAACTTTTTCATTTTTAGGAATCAAAGTATATCTTGAATTTGCTTTAGAGATATTTGTTTTATTCTTTTTGTTATTCTTTATTATCAGCATTGTTTCAGTCTCTGCTGTTTGAAGGGTGCGGGAGAACGGTAAATCCGGTGAACGGCGCCGTGGGACTTCTGTGCAGCGGAAACTGGCACCTGTGTGAGGCCGCTGTGGAGACCGTGCTCGCCGGAGGCGTTCTTCGAGCGCAGCCGGATGCAGTGGCTGGAGCTTCCACTGGTATACGCCGCCCTTTCCGGCCACTAAGATTGGAACATGATGCGAGGGAGATGAACGAGAACTCGTCAAGTTTGATGAACAGAGCAGAGGAACAGGAAACGGTGCGTTACGGTGGTCACAAGAAAAATCAGATCTTAAATTTGTTCATGTAA