Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01535	LG1	17851294	17852433	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	chloroplast
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/A	17851318	missense_variant	p.Glu372Asp
C/T	17851510	synonymous_variant	p.Leu308Leu
C/T	17851534	synonymous_variant	p.Gly300Gly
C/T	17851558	synonymous_variant	p.Ala292Ala
A/G	17851584	missense_variant	p.Trp284Arg
A/G	17851585	synonymous_variant	p.Asp283Asp
C/G	17851599	missense_variant	p.Val279Leu
C/A	17851606	missense_variant	p.Leu276Phe
C/T	17851612	synonymous_variant	p.Ala274Ala
G/A	17851613	missense_variant	p.Ala274Val
G/A	17851622	missense_variant	p.Ala271Val
C/T	17851657	synonymous_variant	p.Ser259Ser
A/G	17851664	missense_variant	p.Leu257Ser
T/C	17851669	synonymous_variant	p.Leu255Leu
G/A	17851671	synonymous_variant	p.Leu255Leu
A/C	17851714	synonymous_variant	p.Leu240Leu
G/A	17851718	missense_variant	p.Ala239Val
G/T	17851730	missense_variant	p.Ala235Glu
G/A	17851737	missense_variant	p.Pro233Ser
A/G	17851748	missense_variant	p.Val229Ala
C/T	17851749	missense_variant	p.Val229Met
G/A	17851769	missense_variant	p.Ala222Val
C/T	17851772	missense_variant	p.Arg221Gln
C/T	17851783	synonymous_variant	p.Ala217Ala
G/A	17851784	missense_variant	p.Ala217Val
C/T	17851786	synonymous_variant	p.Ala216Ala
C/T	17851794	missense_variant	p.Gly214Arg
G/A	17852193	missense_variant	p.Pro81Ser
G/T	17852195	missense_variant	p.Pro80His
C/A	17852201	missense_variant	p.Arg78Leu
C/T	17852223	missense_variant	p.Asp71Asn
A/T	17852231	missense_variant	p.Val68Asp
G/A	17852245	synonymous_variant	p.Ser63Ser
C/T	17852355	missense_variant	p.Gly27Arg

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01535.1

MNNSLFLHNANAIHFTFHSAFSQTQRGHVASNKHLSQRYPRIQCCCVEIDMVKNSQGIYAPKSDKVVVLWDLDNKPPRGPPYNAAVSLKTLASRFGEVTDFSAYANRHAFVHLPQWVLHERRERRSLDILERKGVVTPSEPYTCGVCGRKCKTHMDLKKHFKQLHQREREKKLNRLKSLKGKKKRDRFKERFLRGNHKYNEAARTLLVPKVGYGLAAELRRAGVFVKTVEDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSDMLRRAREADLGTVVVGDWDRALGRHADLWVPWSGVENGEVELVPEMKKRREHGFLNDDDDDDHHDRGDWGGLNEDEELGQDFMLLHSEDEDEDEGNYYYDDEEEEEEDGLYIL*

CDS Sequence:
>Vu_01535.1

ATGAACAATTCGCTTTTTCTCCACAACGCAAACGCAATCCACTTCACTTTCCACTCTGCATTTTCACAAACACAACGCGGGCACGTTGCTTCCAACAAGCACTTATCTCAGCGTTACCCACGCATCCAATGCTGCTGCGTCGAAATCGACATGGTGAAGAACTCCCAAGGAATTTACGCCCCCAAAAGCGACAAGGTCGTTGTTCTCTGGGACCTCGACAACAAACCCCCTCGTGGGCCTCCATACAACGCCGCCGTTTCGCTCAAAACCCTCGCTTCCCGCTTCGGCGAGGTGACTGACTTCTCCGCCTACGCCAACCGCCACGCCTTCGTCCACCTCCCCCAGTGGGTCCTACACGAGCGCCGGGAACGCAGGAGCCTCGACATCCTCGAACGGAAGGGTGTGGTCACACCCTCGGAGCCCTACACGTGCGGGGTGTGTGGGCGCAAGTGTAAGACCCACATGGACCTGAAGAAGCACTTCAAGCAGCTGCACCAGCGCGAGCGTGAGAAGAAGCTGAACCGGTTGAAGTCGCTGAAGGGGAAGAAGAAACGGGACCGTTTCAAGGAACGGTTTTTGCGCGGGAATCATAAGTATAATGAGGCGGCGAGGACGCTGCTGGTTCCGAAGGTGGGGTACGGGCTGGCGGCGGAGCTGCGGCGGGCGGGGGTGTTTGTTAAGACGGTGGAGGATAAACCGCAGGCGGCGGATTGGGCCCTTAAGAGGCAGATGGTTCATTCCATGAGTAGAGGGATTGATTGGCTATTTTTGGTTTCGGATGATTCGGATTTTTCGGATATGTTGAGGAGGGCGAGGGAGGCGGATTTGGGGACTGTGGTGGTGGGTGATTGGGATAGGGCTTTGGGGAGGCATGCGGATTTGTGGGTGCCATGGAGTGGGGTTGAGAATGGGGAAGTGGAGTTGGTGCCCGAGATGAAGAAGAGAAGAGAACATGGTTTTCTGAATGATGACGATGATGATGATCACCATGATCGTGGTGATTGGGGAGGTTTGAATGAGGATGAGGAATTGGGGCAAGACTTTATGTTGCTGCATAGTGAGGATGAGGATGAAGATGAGGGAAACTATTATTACGATGATGAAGAAGAAGAAGAGGAAGACGGGTTGTATATATTATGA

Promoter Sequence:
>Vu_01535::LG1:17852433-17854433(-)

CTGGAAAGTAATGAAAGATGTATGAAAATACTTACCTTTGTTTGGGAGTAGAAGAAAATGAAAGAAAGAGAACAAAAAGAGTGAAAATTGAAGTTCTTTGGATTTATAAATAAATAAAATTGTAAGTTAATATAATTAATTTAAATGAGTAAAAATGAGTTGGTAGTTGTTTTATTTTCCAATTACACTAATGCTTTTTTTTAAGATACTATTGAAAAGAGTAGGAATACAAGTTTTTCTTTCTTTTTTTTCTTATTTCATCATATATCTCATAGGTATGTATGAGATCCAAAGTTTAAATTTGCTAAAACAAATATAATTGTTTTTTTTAAACACTATTAAAAAATCAAACCCGTGTTAATATATTTAAAAGGTTAAAATATGTATTGAATATAATTCTAATGCATTAAAATTTTCACACCAAAACTCATGGTTGAATATGAAAATTCTTCTTTTTCAATTCATCTAAAAACATAACAAAAGCATCAAGTTATAAAGCAAACAAATCTTCACCTACAATAATCTTAATCACCTTTAATAAAATTGTGACGGGAAATAATTTTGTTAGTATTTTTACTTATTTTCTGACACTTAATTACTAGACCGGCCTATATTAAATACACATGTAATAAAATTAAAGTTAGAAAAAAGAAATCGATACATAAAAAACATAAAATTTTAAGTGTAATTCTAGATACCATAAGTGTTAAAAATCTAAAGTGCAAGAAAAGTATTAGAGTTCAAAATCTAAAGTGTAAGAATAATATTAAATTTAAGTATGAATTTAAATATACAATAATAAAATTCATAAATTTATTATTTTAAAATTTTTGTGATAAAGTAGAATTAATGTAGATTATGCGAATATCTGATTTGGTGTTAAAAGTAAAATTAGTATAAAAGAGTTTTATATTTTTTTAGTGTAGTTCATTCAAAATATATGTCATAAAGTACCTGTCAAGGGATTAATTAATAATCATCCTCTGACCAATTAATCCGATGATTAAACATGATTGAGTTGTTTTTTTTTAAATGGATACAACAGATAAAAGTGAACATTATTGCTTAAATTATAACTAATTGATGGTTTTATACTGTTAATAGATTTGGTAAGATGCTATTAATTGAATGATAAGTTAAAGATAAGTACTTTTTTTCTTAATGAGTTGTTAAATTAGCATGTGATATGAGCTTCATAATTGTAAATTGCAATGTAAGATAATGTCTCCTTGCTTTCAACTATAATAATAAACTACCAACAACATCTTACATTATTCTAAACACTCAACTTATCACAAACTTTGATAATATTGCTAAATAACTTCCCACAAACTTCATTAATAACTTATATTCATAATTGGCATGTGAATAAAATATTACAATATGGTTTCATCACTAAACTTCATTATGTTTAATCCTGCATGTCTCACTCATATAAATAAATTCAAAACATACACCCACCTTTTCTTTCTATATTTTTTATTAAGAACTAAAGTTTTTTATTTATAATAGGATTTTAATAACCTATATTTATAATAGAATTTTCAGAATAACACAAATGTTAGAATAAGCTGTGAAACATATATAATGTCTTTGAGAACAATTTTCTAGAATATATATATAATATTTTCTGAAATGAGTTTTTTTTTAAAGTAAATTTTTAGAATACATAAAATGTGATTTGAAAAAAATGATTTTTTCTTTCTTATGCAGTGTTCTACCTCTCATACATATTTCCTGTATAAGTGACAATGTTGCGGTGCAGTGAAACAGTGAAAGGGTATTTTAATCTTTTTAGAGTTAGTATGGAGTGCATTTAGCAAGGATGGGGTGCATGAAGTATTTTTAAAAAATCATGAGGCAGCCCACAAAGAACCAAACAAAAATATATGTGTTCTGAAAGAAGAAGAGCGAAGATGAAGAGAAAGAAGGAAAAGAGTGTTCTTTTTTTTTTCTGTCATCTAAACTGAACAGAGTGTCTCTTATCCACAGCATCAACC

Gene Sequence:

>Vu_01535(-)