Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01527 LG1 17740307 17743404 PREDICTED: transcription factor ALC-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   carpel development, carpel development, fruit development, response to red light, carpel development, negative regulation of seed germination, fruit development, response to cold, carpel development, flower development, circadian rhythm, negative regulation of seed germination, fruit development, response to cold
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein dimerization activity, DNA-binding transcription factor activity, protein binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, identical protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
T/C 17740371 missense_variant p.Asn272Ser
A/G 17740468 upstream_gene_variant
T/A 17740640 missense_variant p.Thr259Ser
G/A 17741069 upstream_gene_variant
C/T 17741082 upstream_gene_variant
A/T 17741090 upstream_gene_variant
A/T 17741095 upstream_gene_variant
C/T 17741175 upstream_gene_variant
C/T 17741334 upstream_gene_variant
T/C 17741335 upstream_gene_variant
A/C 17741381 upstream_gene_variant
T/A 17741491 upstream_gene_variant
G/A 17741722 upstream_gene_variant
T/G 17741750 upstream_gene_variant
C/A 17741753 upstream_gene_variant
A/G 17741957 upstream_gene_variant
C/T 17742242 splice_region_variant&intron_variant
C/T 17742492 synonymous_variant p.Glu137Glu
T/A 17742510 missense_variant p.Arg131Ser
C/A 17742642 missense_variant p.Arg112Leu
G/A 17742643 missense_variant p.Arg112Cys
C/A 17742812 upstream_gene_variant
A/T 17742973 upstream_gene_variant
G/T 17743103 splice_region_variant&intron_variant
G/A 17743193 missense_variant p.Pro71Leu
A/T 17743337 missense_variant p.Phe23Tyr
A/T 17743347 missense_variant p.Ser20Thr
G/A 17743351 synonymous_variant p.Pro18Pro
T/A 17743385 missense_variant p.Gln7Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01527.1
MAGDMHQPQSSLGRTFPPNSEDFSTFFNQLLHNPPTPGMDPNHSASDFTPNNLNNNNPVPSSPSTFHFSHPHHYIPATDANTFKQHNNNHNPDFTSSSEKSVEATKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMTRNGLSLHPMSLPGELRPVIMPQTGLNLDESDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSHVVPSVTSLATSNAPTTFHPSIKDTLYNNMPQLFMDAPKIGKDPSSDLS*


CDS Sequence:
>Vu_01527.1
ATGGCTGGTGACATGCACCAACCACAATCCTCTCTTGGCAGAACCTTCCCTCCCAATTCAGAAGATTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACCAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCAAACAACCTCAACAACAACAACCCTGTTCCTTCCTCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTTCTGAGAAGAGTGTGGAGGCAACGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGACGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAGATCAGTCCCATGTTGTGCCCTCAGTGACAAGTTTAGCCACCTCCAATGCCCCAACCACTTTTCATCCTTCTATTAAGGATACACTCTACAACAACATGCCCCAATTGTTTATGGATGCACCAAAGATTGGAAAGGACCCTTCTTCAGACTTGTCTTGA


Promoter Sequence:
>Vu_01527::LG1:17743404-17745404(-)
CACAAATAAAAAGATACAAAATGTGATAAATGTCTAGTGTAATAATTTATTCAACACTATTTTTATTTCTTTAGTATTTTGATATGTAATAAGAGACCCAAAATAAAATCATTGTATAAATTACAAGTAATTATTATAAAATTTTAATAATAATAATAATAATAGTAACAACATAACAATAATCCTTCCATTTGATATATACGGATAGTTTTATTTTATTTTTAATTATATTTTAAAATAATAATATCGGTTTAAAAAATACAGAAATCAGAAAAAAAAAGTTAAAAACATAATGGGAAAAAATGAAACAAACAAGAAACTCACTAACATGTCTGTTGGGAATAACTTCTCTGTAAATAAAAAAAATAGTTACTATACAATTCAAATTTAATAATTTAAAATGTTTAACTATAAATACAACTTCTTTTTATCACTTCAATATAACGTATATAACAAATAAAATTAAAAAAGAAACAGCAATAAATATAACTTTTTTTATAAAAAATTATAAAACAACATAATCATGACAGCTATATTTTACTACTAGTACTAATAATAATAATAATAATAATAATAATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGAGTGGTAGTTGTTTACGTTATTTTTCACTATAGATAACCAGTGTAATTGTTACAAAGGAAAAGTATAATACGAATCATTGTAGAAATAGTATAATATAATATTTATAAAGTTTAAATTTCCCAAAATAATTAAATATTTTTTGGTATGATGATTGAATTGGTTTTCTCTTTCTTTATTCTGATCAATTTGTGAACTGTCTCGCAGGTCTTAAGGATTGCAATCTCACAGGTCAAACTATTTAAACAGCTGATAAAATTCAACACGGAAATATAAAATAACAATAAAAAAATAAACTCTTTCAGATACTGTAATAAATAATTAATTATCATCTACGATAAAATATTTAGCAGACTACCAAAATAAATTATTAATTATTTTTCAAAATAAATATTTCATTTTTTTGTCATTAGAAATCACAAGCCAAGATTTTTCCGTTGATAGAAGTTTGAATTTATGTTATCATATTACATAATTAAACTCTTTTACATATAGAACATAACTCAATCATCAACATAAATACTCAGTGTTTTTATTTAGTTTTAAAACCAAAATGAAACAAATTCTATTTTTCACTCATTATTATTGTAAATATATTTATTATATCAACTAGTAAATGAATTTAAAATAAAATGATATAAAAGTCAGTAATTTTTTAGTTATAATAAAGAATTCAGTATAAATTAAGATAAAGTAACAAAGTTAGTGGCTGATATAGAATTTTAATGTCCTAACAAGATAAAAGGAGAATACGTTTAGCTTGTTTAACATCAATTATTGTTCAAAGACTAAACAATAATAATAATAATAATGATAAGTAATTACGCTTAGAAATTCTTTCAATATTTTAAAATTTAAAAATTTAAAAATTCAGTTAAAACTCCTTATCTTGATTGACTAATGAGACACTACAAACATATTTAGCCGTCTTAATTACAAATTATGATTAAACTTTAAGAGAAGCAGATGTTATTGTTTTTTTTCATATGATTTTATTTATTTATCTATTTTCTTATAAATTAAATTACATTTTTTATTCTCACTTATTTTCACTATATTAGATAACTAATTATTTAATCTATAGATCTATATTTTCTCAAGTGATTTCTTGATTAGTTTAATTGTTTATATTTTTGTCTAGGTAACTGAACAGGGAAAGTTATTAATAAATGACCTCGTACAAACAAACAGTATTAATAAAACCAGTTTAAAACGTTAATCCCGCTTAAACAAATCTCTTGTCCTATCTGCTACTATTTCCAACCTGCTGGGCAGAGCATAACATGGCATAACAGAACACACCATAACATCATCAACATTCTCTCTCTCTCTCTCTTTCTCTCTCTCATTTCTTTGATCTCTCAACTTTCAAGTTCA


Gene Sequence:
>Vu_01527(-)
ATGGCTGGTGACATGCACCAACCACAATCCTCTCTTGGCAGAACCTTCCCTCCCAATTCAGAAGATTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACCAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCAAACAACCTCAACAACAACAACCCTGTTCCTTCCTCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTTCTGAGGTACCTCCCCTCCAATGTTTATTTTTGGCTCCCCCACAAAAAACTGTCATCCGTTGCACACACCCTCTGGACACAACTCTTCAATTTAAATATCAAAATTGAAACTTGCTCAACGTCTAAATTCTCTAATGCTATTAGTCAAGGTTTTATATTCTGATCACCCCGGTTGTGTTTTCATTGCGATGATTGGTATTGTGAAAATTTGTACATGAATATGGCTGATGTTGTCATAATTGTGATTGTCAAAACTGAAAAAGCCTTTCAAAGTTTTTGTTTTTGTAAAATTTTGCTTGTAGTTAATGCCTTTTTAGCCTCGTAGCTTTGAGGAAACTTGGAACACAGTTGGGTAGATCTTTCGAAAATTAAAAATTGCGTTTTGGATGCCTTTTTTCTGTTAGTGAGTGGAGCTTTCTTTTTGTTTTTGATAGAAGAGTGTGGAGGCAACGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGGTTCTTTTATTCTTCAACTTTATGAGAAGCTTTTATATTTTCTTTGTTTTAATTGATGATTTTGATGTGTGCAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGGTACTGTATTTCTAATCACTACATACATTCATCTAATCCTTTTCCTCTTCATTAAGCTAATTTATTTTACAAAGGTTTTTCTATCCTCTTTTCTGGATTATTTTCTTCTGGATGAGTCCTTTGTGTTTGTTGTCAACAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAGTGAGTCTTCTTTCATTCGGCTTGTGATATTATATAATCACTCCTGGGAGATGTCTTTCGTTCTCTACTTGCTCATATGTATTCCCTTGTCCTTTTCATTTTAAGTACTTCACAGATTTTCTTTTTCATGAATACTTTCTTGTACAATTCTTTTGTTACTTAGCTCACTCATAATTTTATAGTTTCTATGGAATATTCACCAATAATTAAAGACTATGTTAGGGAATAAAAATTATTGTATGATACCCGGTTAAGTCACATAGAGATTGGCTGGGACCATTTACACATAGTGGTCCTGAACCATACAGTAACTTATTAAGATGTTGTGACTTACAAGTACCCTTTTCTTGTATTTTTGTGATCAATGAAAGGACACATTTTCTTTTTAGATTTTCACTTGAGATGAACAGTTGAGAACTTCATAATCTGTTTTGGACAGTGCAATCAACCTGTCATGCGGTTAAGTTGAGTCATAGAATCAATAAACAGCAGATATGATGACTGTTTATTCGCATGCTCAACCATGATTTGACATGGAGTTTCTTTTGTTAGTCACCAAAAGATAAACTTTACTTCCGTGCTAACTTAAGAGTTGAGAGGGCAGTGAACTCCTGAATATTCTTGTTGTACACATTGACCTTAACCATAGCATGTGCCGTCGATGAACAAAAGACTAAATGACCTCTTAAAGTTGTTTGAACTCTTTTAGGTACATTTATTCACAAACTGAATTTTTCAGAAAACTTGAGTGTTAGGATTAAAGTTGGAAAAACCAAAAGTACTGTTACTTTCAAAGCAATTACTTTTTCCTTCTTCATATGGTATACATTAGAATTTGTTATTATGCATTAAAATTCGTAAAATTATTTTCTTAACTTCAATTCAAACATAGCCTAGGTGGTTAGGTGAAGACACGCATGGTTTTTATATTACTTCCTTCACAAGAGTCCTTGCATTTGAAGCAAGAACAATGCATAGGTTTACCACCTCGTTCTGAAATTTAACTTTTTATTAGAAGAAAAAGAACAACAATGATCACACTCTAGACCACTAGGCCCCAGAGGCTTTGGTTTATGAACCATCTATCCTAAAAGTTTAAACTTTTAGGCTAAGACACATAAATCACCTGTTTTTATATCACAACTCTAATACGTTTTAGAGTGGGTACAACATCCCGAACATGTAAAAATGTCCAAGTGGCTGAATATTAATTGACTCACTTTAGTTAATTGATGGAGGAAAAAGAAAAGAGAAGGCTTAGAAGTTGGTATTGCCAGATTTAGGTTATTTGAGTCTATTACTCATTCATTGTCTAATGGTTACTTTAGTGTCTGTGATTGATTCTGCAGATGTTAATGACGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAGATCAGTCCCATGTTGTGCCCTCAGTGACAAGTTTAGCCACCTCCAATGCCCCAACCACTTTTCATCCTTCTATTAAGGTTCATGCTTAATACTTCGACTCCTCAATATCATTGTGTTCTGAGATGAGATCATCATGTGCTCATAGTACAAATTCCAAAACTCTATCTATATGCTATATATGTGGAGATTAATCAGAAAGAATCATAGACGTTTCATGATTCAAATTATATAATAATTTATCTTCATGATCAGTACTTTATTGTTTTGATATATGTTGAGCTTAACAACTCTTGGTGCAATATGAAGGATACACTCTACAACAACATGCCCCAATTGTTTATGGATGCACCAAAGATTGGAAAGGACCCTTCTTCAGACTTGTCTTGA