Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01466 LG1 17242669 17245443 PREDICTED: B3 domain-containing protein Os11g0197600-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root development, root development, plant epidermis development, negative regulation of cellular process, cellular component biogenesis
Cellular Component   located in   nucleus
Molecular Function   enables   molecular_function
SNP Position Effect Amino acid change
T/C 17242800 missense_variant p.Thr507Ala
C/T 17243339 intron_variant
A/T 17243343 intron_variant
T/C 17243348 intron_variant
C/G 17243415 intron_variant
G/A 17243417 intron_variant
A/G 17243424 intron_variant
A/T 17243527 intron_variant
C/T 17243532 intron_variant
G/T 17243616 missense_variant p.Pro385His
A/T 17243828 synonymous_variant p.Gly314Gly
G/T 17243894 synonymous_variant p.Ile292Ile
T/A 17243898 missense_variant p.Asp291Val
C/A 17243899 missense_variant p.Asp291Tyr
G/A 17244038 synonymous_variant p.Cys244Cys
A/C 17244445 intron_variant
A/G 17244479 intron_variant
A/T 17244737 intron_variant
T/A 17244769 intron_variant
G/A 17244806 intron_variant
A/T 17244874 intron_variant
G/C 17244917 intron_variant
C/T 17244955 synonymous_variant p.Val163Val
T/A 17245066 missense_variant p.Glu126Asp
T/G 17245067 missense_variant p.Glu126Ala
G/T 17245139 missense_variant p.Ser102Tyr
A/T 17245207 synonymous_variant p.Ser79Ser
A/G 17245270 synonymous_variant p.His58His
C/T 17245299 missense_variant p.Asp49Asn
T/A 17245439 missense_variant p.Glu2Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01466.1
MEGRTYGSFSLTGPSGNVWTVHLLKQDNDLFFHHGWSSFVVDHRLECGDLLVFRYEGHLHFTVQVFDKDGCEKEAAFMSECSQSSSDFEEIVGQKRDVKESSSLDIAFDGVAKKRRGCKYENREHEPGFVGKELLRYEVVRPIRMFRETEETSKACLANDSLVPFHMDHRNEEAAILYRNGKEDGHYFLGGVSLSNVSAQDEKKVAQSFTSKFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVNECELRVHIAGVGKDGLEDDQVGRVNAGHAGTTRYMPMNAKVNSKSIRKVDLSDKKWPKIGQETVLSIDLKKSGRASNTSKKMGLCPQSKAAHKKLATPRRHRVEDELSSQAKSGLRMLFALDEQRVAQAFSSPFPSFVKIMKMFNVSGSYTLFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQCEMQVYISGVGKEGPDHQNAHLKLDRLSILPSTC*


CDS Sequence:
>Vu_01466.1
ATGGAGGGAAGGACGTACGGGTCATTTTCATTGACTGGTCCCAGTGGAAACGTATGGACAGTGCACTTACTTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGTCATTTGTGGTGGATCATCGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAAGGTCATTTGCATTTCACCGTCCAAGTATTTGATAAGGATGGATGTGAGAAAGAGGCAGCATTTATGTCTGAATGTAGTCAAAGTTCGAGTGACTTTGAGGAAATTGTTGGACAGAAAAGAGATGTGAAGGAGAGTTCTTCTTTGGATATTGCATTTGATGGTGTTGCTAAGAAAAGGAGAGGTTGTAAATATGAGAACCGGGAACATGAACCAGGGTTTGTTGGTAAAGAACTATTGCGATATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAAACTGAAGAAACTTCGAAAGCTTGTTTGGCTAATGATAGCCTTGTGCCTTTTCACATGGACCATCGAAATGAAGAGGCTGCCATCCTGTACAGAAATGGAAAGGAAGATGGTCATTATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCAGTCTTTTACTTCCAAATTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAGTTTTCCATGGCGCACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTCAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTCGTTCGTGGTAATAACATTAAGATTGGAGATATCTGTATTTTTGAGCTTGTGAACGAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAAAGATGGTCTAGAAGACGACCAGGTTGGAAGAGTGAATGCAGGGCATGCTGGAACTACCAGATATATGCCAATGAATGCTAAAGTAAACTCAAAGTCCATAAGAAAAGTTGATCTATCAGATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGCCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTACTCCGAGGAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAATCTGGTTTGAGAATGTTGTTTGCACTGGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCCAGTTTTGTTAAAATCATGAAAATGTTCAATGTCAGTGGCTCATACACTTTGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTACCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGTTGGATGGCCTTTGTTCGTGACAATGACATAAATTTTGGTGACACATGCATTTTTGAACTGGTTACTCAATGTGAGATGCAGGTGTACATATCTGGGGTCGGAAAGGAAGGGCCTGACCATCAAAATGCCCACTTAAAACTTGACAGATTATCTATCCTTCCATCTACCTGCTAA


Promoter Sequence:
>Vu_01466::LG1:17245443-17247443(-)
TTTTTCTCAATTAAAATTTGTATACTTTAAGAAATTACACAAGTTAACAAATTTATTTATACATATATATATATATATATATATATATATATATATATATATTATGCATATTTTACAAAATTAAATATGAATCTTAATTAATATAAACATTTTTTATTAAAATTAGAACAAATATAAATAATGACTATAAATAGAAATCTAATTATTTGACTTGTGTCAAAATCCATTTAATACCAAAAGAGAATTAAAAGTCAAGTGAAATTCTTGGTTGACTTAATTTTCTTGTCTCCTATATGTCCAAAATATCTAGCTAACCACTTTCATTTAAATCTTTCAATCCATAAAAATACTAAACTATATTTATTTTGACTTTGACCTGAACCAACGTGATATTACACAAAAAATAATATAATATATGTAAAAATCAAGGTGAATATATTATTTCAATTTAGTTCATCACATAAAAAAAATTATTATAACATTTAAAGGATAAAGCGAAGAAGAAAATTATAGAAAGAGAAATACGAGATAAAATATGTATTGAATCACAGATAGATGAATAAAAAAATATTATAATACGAATGATTTCATGAATAATAAATATAACCTTTTACTACAAACTAAATTTGATAAAATAATTAAAAGCTTCACACAGGAACTTGTTTATAATTTTATTATGTTATAATTACGGATTATTTTATAATCTGTATTCTAAATTTTACTTGTTAGCTCTATAATAAAAAGTATTCACTTTAATTTTTATACTTCTACAATTGATCTCTATAAATTTAATAGATAAAGTGATTAAAAATGGTGTATCTATAAAAACAATTAAAAAATATATGTTTTAAAAAACGAGTAATTAACCTTTTATTATTTCATGGCTCTATTGAGAATTCAGGTCTCACGCGCTGGTGCTGGGGACGCGCTGGTGCTGGGGAGCACAGAGACGGCGTCGTTTCCATGGACTAAATTTGCACGCGCCCACATTACAATGCTAAACTAAATTTGATGCAGAAGCATACAATGAGACTCAAATGAAAACGAACACAAAAAGAGAAATTAAGAATATCAATTTCACACCAAGCTTGCTCCGTAGATCACAACTTCTACTCCACCCAAAGGTACCTTCTTTTCACTCCCTCTCTTCCTTTTCTTTTTTATTATTATTGTTTTTCAATCTCGTTAATGGTTCACATTTCTCTCCCTTCAGATGTGCGATTTGGCTATGATCAAGTCCAAGTGATTATCCAGAGATCGAAATAAAAGTAAAATCAAGCGCTTTGGGGTTGTTAATGTTGAAAAGTGCCAAGGCGTTACTCAAAATTCGTTGTCAGAATCAAAATCGAGAGAGAAACAGAAGAATAGGGTTTGATTGATGGGGTGTGACTGTGGGGGGAAGTTAAATTTGAGAAAGCCTCATTTTTATGAGGTTTATTCCTCTGCCTTCAGCTCTCACAGACTGGTAACTGTCCAATTTTTCTCTCTATCTCTCTCACTCTCTGCTGTTCTCGCAGACCTAGCTTCATTTTCCCAAAGTATATATTTAACTACCCTTATGAATGAAACCAGAAAATTCAATCTTAAACTTAGGTTTTACAACTTATGGTGCTCCTTTCGCTTTTTCGCACAATGTGTTATGACTAAGCATCATTATGCTACTGCAACAATAACAGGGTAAAGTGTGTTTAAATGGGAAAATATATGCTTTTTCTTTAAAGAAAATTCTGTGTTACTTAAAAGTTTTTAACTTTTTTTTTTGTCTGAAAGGCACTATTTGTTATCAAGTTAACTAGAAAACGACAACAGTAATATTGTTTTTTACACACTTAGTTGGATTATCCTATTCATGTTCTAGTGTTGCCTAGTCCTAAAGAGGGCTTGAGAAATGTTTGATGTCGCTATCCAATAATGTTTATCATAAATTTCTTGTTGGAATCTTTATGTTTAAAAGTAAGTTATCTTTTATGCAGAAAATTCCAGATGGATTTTTGTGTCGC


Gene Sequence:
>Vu_01466(-)
ATGGAGGGAAGGACGTACGGGTCATTTTCATTGACTGGTCCCAGTGGAAACGTATGGACAGTGCACTTACTTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGTCATTTGTGGTGGATCATCGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAAGGTCATTTGCATTTCACCGTCCAAGTATTTGATAAGGATGGATGTGAGAAAGAGGCAGCATTTATGTCTGAATGTAGTCAAAGTTCGAGTGACTTTGAGGAAATTGTTGGACAGAAAAGAGATGTGAAGGAGAGTTCTTCTTTGGATATTGCATTTGATGGTGTTGCTAAGAAAAGGAGAGGTTGTAAATATGAGAACCGGGAACATGAACCAGGGTTTGTTGGTAAAGAACTATTGCGATATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAAACTGAAGAAACTTCGAAAGCTTGTTTGGCTAATGATAGCCTTGTGCCTTTTCACATGGACCATCGAAATGAAGGTACAGTTGCTTTGATCAAATTCTGGTTCTCACACAAAATGATCTATTAAAATTTTTCTAATAATAAGTCTATACGTGTCTAGAAAAACTTATTTTGCATTAAAATCATTAATTATATGCCACAGTATACTTTTCTTTAGTACTTGTTCCTTTAAGTATGATATGTGAAAATACTATCTAAAATACAGTTTATTGACAAAGTCATGAACTCATGATTGCTCGAATTGTTCAATGTAACGCAGAGGCTGCCATCCTGTACAGAAATGGAAAGGAAGATGGTCATTATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCAGTCTTTTACTTCCAAATTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGGTGAGTTGTTAGTTTCCAAACAATGTTGTTTTATGACTCTACACTAAGTGCTAAGTTACTTTCTTAGTGTTTCATTGGCTTGAGAAATTGAATTGATATATATTATCTTTTTCCTTGAAAGTCCTTCATCCTTCATAAACATAGGATGAAAAGCATTTCAGATGTACACTATTAAAAGATGCCCTGATTGAAACTTTCATCCATACAAGTCCGAATTAGTGAAAGTCAACCTTGGTAGATTGGAACTATTATTTTCCTTGCACTTAAATGCATCTTGGAGTGATTTTCCCACACCCAGAATTATCTATAGTACTTAGAGGTTTTTTCTTATTCGCTGTGCCTGCCATTAACCTTGAAATTTTGCTTCTCCCTGAATGTGCACGGGGATCAATTTCTTGCGGATGCTGATTTACAAATTTTGTAATGCAGAATATCCCATATCAGTTTTCCATGGCGCACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTCAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTCGTTCGTGGTAATAACATTAAGATTGGAGATATCTGTATTTTTGAGCTTGTGAACGAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAAAGATGGTCTAGAAGACGACCAGGTTGGAAGAGTGAATGCAGGGCATGCTGGAACTACCAGATATATGCCAATGAATGCTAAAGTAAACTCAAAGTCCATAAGAAAAGTTGATCTATCAGATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGCCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGGTAAGTTTTTTCATTGTTTGCCCAATTTGTGATCCACTAACATTCCAATTACATGTCAGTTTTATATCTTATTTTGTAACAAATTTCTATGAAATTTTTTCATTTTCAGAAAAAAAAGGAAACCAGCATAACTCAATTCCTTGAGAATTGAAACTGTTTCACTTTGCTACTGAAAGGAAAAACAAAATGAATAAATATTGAATACTTTCCTTCTTTTAAGGTTTCTAACTTCCAAATTATGACTTATGTTTTGAACTCTAAACAATGACAGCTACTCCGAGGAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAATCTGGTTTGAGAATGTTGTTTGCACTGGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCCAGTTTTGTTAAAATCATGAAAATGTTCAATGTCAGTGGCTCATACACTTTGGTGAGTTATGCACAACCATTTAGTATCCATATTTACATTTTATTATCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATATAATATGAATGTTAAGTTATTTAATGTCTGTTACATTGTAGAAAATTCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTACCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGTTGGATGGCCTTTGTTCGTGACAATGACATAAATTTTGGTGACACATGCATTTTTGAACTGGTTACTCAATGTGAGATGCAGGTGTACATATCTGGGGTCGGAAAGGAAGGGCCTGACCATCAAAATGCCCACTTAAAACTTGACAGATTATCTATCCTTCCATCTACCTGCTAA