Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01357	LG1	16231998	16236737	PREDICTED: BEL1-like homeodomain protein 7	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding

SNP	Position	Effect	Amino acid change
T/A,*	16232025	5_prime_UTR_premature_start_codon_gain_variant
G/A,*	16232031	5_prime_UTR_variant
T/G	16232085	5_prime_UTR_variant
T/A,*	16232110	5_prime_UTR_variant
C/T	16232544	5_prime_UTR_variant
C/T	16232569	5_prime_UTR_variant
T/A	16232571	5_prime_UTR_variant
G/A	16232634	5_prime_UTR_variant
T/A	16232666	5_prime_UTR_variant
T/A	16232668	5_prime_UTR_variant
G/C	16232687	5_prime_UTR_variant
G/A	16232755	5_prime_UTR_variant
A/G	16232769	5_prime_UTR_variant
C/G	16232812	5_prime_UTR_variant
G/A	16232903	splice_region_variant&intron_variant
T/G	16232942	intron_variant
G/T	16233008	intron_variant
T/C	16233108	intron_variant
G/A	16233109	intron_variant
G/A	16233122	intron_variant
A/C	16233127	intron_variant
T/C	16233182	intron_variant
T/G	16233183	intron_variant
T/C	16233223	intron_variant
T/C	16233250	intron_variant
T/G	16233274	splice_region_variant&intron_variant
G/A	16233281	splice_region_variant
G/A	16233288	5_prime_UTR_variant
A/G	16233326	5_prime_UTR_variant
C/T	16233450	missense_variant	p.Ala13Val
G/A	16233873	missense_variant	p.Cys154Tyr
G/A	16233907	synonymous_variant	p.Arg165Arg
G/A	16233960	missense_variant	p.Gly183Asp
T/C	16233975	missense_variant	p.Leu188Pro
G/T	16234179	missense_variant	p.Ser256Ile
C/A	16234185	missense_variant	p.Ala258Asp
C/T	16234195	synonymous_variant	p.Ser261Ser
G/T	16234225	missense_variant	p.Gln271His
C/T	16234318	intron_variant
T/C	16234606	intron_variant
A/G	16234689	intron_variant
A/T	16234695	intron_variant
T/C	16234731	intron_variant
G/T	16234732	intron_variant
G/A	16234770	intron_variant
G/T	16234784	intron_variant
G/A	16234785	intron_variant
T/A	16234794	intron_variant
A/G	16234795	intron_variant
A/G	16234809	intron_variant
A/T	16234826	intron_variant
T/G	16234874	intron_variant
A/G	16234876	intron_variant
A/T	16234878	intron_variant
C/A	16235021	synonymous_variant	p.Arg327Arg
A/T	16235041	missense_variant	p.Asp334Val
A/G	16235296	upstream_gene_variant
T/A	16235309	upstream_gene_variant
A/T	16235313	upstream_gene_variant
T/C	16235552	upstream_gene_variant
T/G	16235582	upstream_gene_variant
G/A	16235634	upstream_gene_variant
A/G	16235649	upstream_gene_variant
T/A	16235753	upstream_gene_variant
C/T	16235754	upstream_gene_variant
G/A	16236042	missense_variant	p.Asp515Asn
G/T	16236083	synonymous_variant	p.Leu528Leu
A/G	16236118	missense_variant	p.Asn540Ser
A/T	16236169	missense_variant	p.Tyr557Phe
C/T	16236178	missense_variant	p.Ser560Phe
T/C	16236308	synonymous_variant	p.Ser603Ser
A/T	16236414	3_prime_UTR_variant
A/T	16236450	3_prime_UTR_variant
C/G	16236508	3_prime_UTR_variant
A/C	16236511	3_prime_UTR_variant
G/A	16236524	3_prime_UTR_variant
T/C	16236570	3_prime_UTR_variant
T/C	16236642	3_prime_UTR_variant
A/G	16236652	3_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01357.3

MYSNQAFSSGPYADMLSGNPLLPHNYSETVGGQNELKFMTSMRDTMTVQSIDGNGAPTAGQDSFSNAGDSHSHLVPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVPNLKGTSSLKDDEASLQRELRNAECMASLASSGFHRREGLLYTPQHPSMCLGEGQDGSLGFSSSVLSPQYLKAAQELLDEIVNVRKALKQTGLEKQRSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALSTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMSSNILSSENTLKAPRDDAQSPDSKREESQDNIITVDDSDIQHHGLKLDHASELDRGIRGSDHGENGLDPRIGRLQGDQRFNINNSNSSYYGEGCIIASAPATYDLSELGNIGVGGQVSLALELRNCDSEGFGGSNDDMLRRRKKPLASSSEADLIDYHFTDQEKQQSKFGNPHLLHEFVV*

>Vu_01357.1

>Vu_01357.2

CDS Sequence:
>Vu_01357.3

ATGTATTCAAACCAAGCGTTTTCTTCAGGGCCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCCCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCAATCTATTGATGGGAATGGGGCCCCTACAGCTGGTCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCCCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGTTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTCCCATATCAGTATCCTGGCGCAGGTTTCTCTTCACTAATGACTGCTTCTGTTCCAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAGGAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCGGTGAAGGCCAAGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAGCCCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACAGGTTTAGAGAAGCAACGGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCAGGGCAGATATCTTCATGTCCCAACAGTTCTGCTGCAAACTCCTCATGTGAACTCTCACCGGCAGAACGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATCGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACCATACACTGCACTGGCCTTGAGTACAATATCACGCCACTTTCGGTGTTTACGTGATGCCATTAGTGGTCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCGCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCACTTCCTCCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAGGAAGAATTTGGCGATTCTGAGATGAGCAGCAATATACTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGCTCAATCTCCTGACAGCAAAAGGGAAGAGTCCCAGGACAACATAATAACAGTAGATGATAGTGATATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGAATCCGAGGTAGTGATCATGGAGAAAATGGCTTGGATCCTAGAATTGGGAGACTGCAGGGTGACCAAAGGTTCAACATTAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTTCTGCTCCTGCCACATACGATTTATCTGAGTTAGGTAACATTGGTGTTGGTGGGCAGGTGTCACTAGCATTGGAATTGAGGAACTGTGATAGTGAAGGGTTTGGCGGGTCCAATGATGACATGCTTAGAAGACGTAAGAAACCATTGGCTTCTTCTTCAGAGGCTGATTTGATAGATTACCATTTCACAGACCAAGAAAAGCAACAGAGCAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA

>Vu_01357.1

>Vu_01357.2

Promoter Sequence:
>Vu_01357::LG1:16229998-16231998(+)

CACTTTTAATTGTTAAACATGACTCAGATAGCCACAACCATATACTCATATAGATGATAAACCACGAGTTTCGATTTTATTTATTTTTATCACTTTTAATTGTTTTTTATACTATAAAATTCTTAAACATTTTAAACCCCTAATAGATAAACATTTACCATGTAAAGAATGGATAAACATTCTTAATAAACATTTGTTGTTGGGCGTAAGAAAAGTCCAAATTATCTTGAAAACATTTCGAATTAAGAAATTTTATTTTAAATTATATAATTCATAATTAAAAAATACATTTCAAATTATATAATTCTTAAATATATTATGGATTATCGATTAAAAAGACATAGAAATTTATTCTTAATTTACACAATTCAGAAATATGCAATCGAAAATGTAAAAATATATTACAAATTATACAATTTAAAATACATTTGTAAATCATATAATTAAGAAATCTAGAAATACATTATGAATTATATATAATTTGAAATCCATACAATCTATAACACATATTCAAATCTCGAAATATATTATGGATTGTATATAAAATGTATTTCTAAATTCTATAACAAAAAATATGAAAATTTTAAACATTCCAACATCCGATAAAGGTATATGAATAAACTATAAGGGTGGTATGATAATGATATGCCTCTAAGAAGAGAGGCAACCCTATCCATTTAAGGAAAGGAAAAAGCCCTTTCACAATTTGATGCTCATTCAATGAATGTGAAAAGTTGACACAACAATGTGTAATAGAGGAAGCCATGAACATGGTGATTTGAATTGAATAATTAAGCTCCATCATAAATAAATTTCTTACATTCATTTAATATTATCTTTTCTTACATTTTATTTTCTTCTTTCTTAAAAAAAATAGAAAAATTTATTTTTTTATAATTATTTTACTCTTATACTATACATCAAATAAATATAAAAATATATCATGGTACCATCACTTCAGAATAAATTCTCTTTTTGCCAACTTGTATTGAAATGTTATGCTTGATAGGTATCATGGTAGTAAAAGATGAAATAACTCAGTGTTTTGGATCCAGCTAGCTACATAATAACTAACAAATGATATACTAATAACTTGGGCACTCACCAAAGTCGTTTATAATAATAATAGCACTCGACCTAATATAATTAATTAATAATAGTCACACATTAATAAGAGATGACGTGCACTGAATTAGTGGATTGTGGTTAGATTTAGAACACATCAAACATACACGTCCATGCCTGATTTGGTGACTTTGACCTACTTATTATTCTACTCATACCCAATCCACCCAACCCTTATATCTTTTTATTTTCATTTTTCATTTTTCATTCATCACAACAACTAATCTTCTTCTTCTTCTTCTTCTATCTATGTCTATGTTCATCCTAACTCAACAACACAAAGATTGTGCATGATTTGTGACTTAAGTTATGTGAGGGAGGCTTAAGAGGGAAATAGGTTACAACAATACATTATATTGCATTACATTTCAGGTCCACCAACTGGTGGTTAGCCTTTGAACACTTCCAAGCAATAATATAATCAACCAGTCAACCACCCTCTCATATCTTTTTTTCTATTCTATGCTTCAATTTCATTCTTCTATTTACACCACTCCTTCCTATTTTATATATTTTACCTTCTATTCTACTACTACTACTACATGTTTTTAACATCTTCCTTTGTCACACGTGCTGTACAGTAATACTTTTACAACGGGTTTAAAGTGTTGTTATAATTTGTAAAAATATGTGAACATATTTCTTGTGCGGTTTTAAGGAGTATCTTGAATAGTTGTGAGAGTGAATTGTTTTTGACAACAACCATAAGAATATCTGAAAAAACATTATAGTATGAGAATTGGTATAATATTTTTCTCAGAAGTTATATACATATATGTAACACGACAAGCAAATACGTTAGGGACTTGGGTTTTCAGTAGAGCAGCATGCAGAAGAAAGTTTAATTAATAGAAATAAATGATGTATATAAGACG

Gene Sequence:

>Vu_01357(+)

GTAGACGTGTGAAAGTAAGAAACCAATTTGTTTGATTCTTTATTTGTTTGATAAAAAATGGTTTTGTTATTCATTGGTTGGTGCAGCTGGTTGTTCCAAAGATAATTTGAAATTTATATGTCTTGGGATTGCCATTTGTCTGGGCTTCCCCAAACTGTGGATTCTTGTCTGTAATTTTGCTCTAAACCTCTCTTTTTCTTCTCTTCTCTTTTCTCTTCCTCCTCCCACTTCACCCTGCTCCTCTCCTTCTCTTTCTCCTTCAGGTATTTCTCTTTCCCTCTTCTCTCTCTCTCTTTTCTCAAAAACACCACAATACTTCACAACACACACTTCAGATCACTATCATCATGCTCTTTACTGTTTCTGCTTCATCATGCTAGATGCTACTTCTCCTGCCCATAAACTCTTCTTCTAACAAAAGGGGTGGTGGGGTTTTCACTTTTCATCATTAAAAGTATAAATTACTATCCAAAAGCTACTGTTGAGTGCAAAAGTTTAAATTATGCTTCAAAGGTTTCGATTTTTCACTCATTATTGTCTTCTGTTCTTGATTGACCGCTGCAGTGTTTCTCTTGTACCTTTCTTCTTTTCACTCCTCAATTTCACTTTTTTTTCTTCTTCTGTGTTCTGAACTCCGCCTTGCTTCTTTGCTTTTCACTTTTAAGTTTTATCCGGCACCGGCAGCACCGGCAGCACCGGCAGCACCGGCGTAGGGTTTGAACTATGAAGCCAATTATGCCTGTGGGATTTTGGTTTCGCACCTCTTTTTTCAGTTTTGTTTGGTTTTCTGGTTTGTTTCCATCGTTTTCTGCTACCTCGTACCTCCGTTTTTGACTTGCAACCCGCAAAAACAAAACAACAAAAGTGAAAGAAGCTTCCTTTGGTCAATTTACTTAACAGGGTAAGCAAAGCCTTTCTTTTCTTAATCTATGGTAACGAAAACATGCTTTCGGCCAAACCCCTTTTAATTCCTCACGTCGTTTGAAGTTTAAGCCAATGCTTTGTGGTGAGTGAACGGTTGAAGCTGCACTGTTATGCTACAGATATATGTATGCTGTAGATAGTGATATAATGTGTCTCTGATTGCTCTTGCTTGTGATGTGGTGCTTTTGCTTTATAACAACGTAATATTTTCCTTTGATCATACGTGTCTTCTATTTTGTTAATCTTTCCCTTCATTAACTTTTTTCCCCTTTTGGATTATTTTAATTCAATTTAGGTTCTGTATAGTGATGAGTTTTTGTTTTTTCAATATCATCATCGTTGGTTCAATCTTTTAGCAGGGGTAGCGTTATATATTCAGCTCGGCATCACTACTGCTTTCTTGAACCTAAACCTCAAAGGAGATGAGTAGCTGACTCAGTTGTGAAGAGACCAGAAACAGGCACATTTGAATTTGAGTTATAAATTTTACAATGTATTCAAACCAAGCGTTTTCTTCAGGGCCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCCCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCAATCTATTGATGGGAATGGGGCCCCTACAGCTGGTCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCCCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGTTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTCCCATATCAGTATCCTGGCGCAGGTTTCTCTTCACTAATGACTGCTTCTGTTCCAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAGGAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCGGTGAAGGCCAAGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAGCCCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACAGGTTTAGAGAAGCAACGGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCAGGGCAGATATCTTCATGTCCCAACAGTTCTGCTGCAAACTCCTCATGTGAACTCTCACCGGCAGAACGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTGGATGAGGTAAGCCTATAGACTTTGTAGCATTGAATTACAGTTTTTTCTTCTTTCCTATACTGTTGATATAACGGCCCTGGTCTGTCCCCAGTTTTTTGTATTTCATATAGTTGGTTTTCAAGTTTTTGGTACATATACAAATATTTAGTATATGTGTAGTAGTTTATTTTCAAGTAAAATCACATTTTTTCATATCTTTTGTAAGAGAACATTAGGAGAAAAAAAATAATTGTTTTGTCCAAAATAATCCTTTGAAAACACGTTCCAAATGAACGTTTTACCTAACAGCTTAAGCTTTCGTGTAAAGTTATTTACTCAACAACCACAACAAGTTTCTAATTTGGTATGTTATTGTTCTTCCTGGATAAAAGTGTATGTATTGAAAGTGTTATGTATAGATTTATAACACTTAGTAATAAGTAGCAGGGAAATGGTTACAGAATAAAAGAGTAAATGACTTTTTCCGTGGTTGATTTTCAGTTATGCAATATAGTTAGTTTTATACGTATGCTGCATTAGGGATTGATTATATTGTGTATACTTAAATACTAAAGACACAACAAGTGTGAGTGATCATGGCGATGACAGTGTTAGCTTGTGAATTAACTCTTAAATTTTTTCGTTGCTCTGGCAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATCGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACCATACACTGCACTGGCCTTGAGTACAATATCACGCCACTTTCGGTGTTTACGTGATGCCATTAGTGGTCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCGCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCACTTCCTCCATCCGTAACTCCCCCTATTCTGTACATAATTTATTTCATGTTTCCTATATAGTATTTTGTCTAATAATTGTTTTCCAATTTTCATTTGGTTCCAGTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTATTATAGTTAATATTTTTCTAAGTTGCAGAAGATTGTATAAGTGCATGTTTGTGAATGATTACTTGTGTTGAATAATCACTCTTTTTCAAAGCTGATAGTAAAGAGTATGTAGTGTTTACACGAACAATTTATAAGTTGACATGTATGGTAAGTTTGCTAATTTTTATGATAATTATGTTGAAAGCAATTCCGCTGTTAAACTTAAAAGGTAGTAATTTCTCCAACATGAATGAAACAAATTAAATGCCTACATGTATTCCCTGAAAATTTTCTTTTGATGGGGATCCAACAGTAAAAATCAGTGACCCCCTGAAATTTAAGTCTTGTTGTGTAACGTTTGCTGGCCTCCATTTGATTCATGTCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAGGAAGAATTTGGCGATTCTGAGATGAGCAGCAATATACTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGCTCAATCTCCTGACAGCAAAAGGGAAGAGTCCCAGGACAACATAATAACAGTAGATGATAGTGATATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGAATCCGAGGTAGTGATCATGGAGAAAATGGCTTGGATCCTAGAATTGGGAGACTGCAGGGTGACCAAAGGTTCAACATTAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTTCTGCTCCTGCCACATACGATTTATCTGAGTTAGGTAACATTGGTGTTGGTGGGCAGGTGTCACTAGCATTGGAATTGAGGAACTGTGATAGTGAAGGGTTTGGCGGGTCCAATGATGACATGCTTAGAAGACGTAAGAAACCATTGGCTTCTTCTTCAGAGGCTGATTTGATAGATTACCATTTCACAGACCAAGAAAAGCAACAGAGCAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGATGAAGGGTGAAGGGAACAACGGAAGTGTGTACCAGCAAAATAGATAGATAAACAAAAGGGCCTGTGTTGTTGCTTTATTTACTTCGTTATTCATTCTTGTTGTCAAAATTTCATAAAAAGCCATGTAAATCATGAACAGTAGTACAAAATATACACGTAGGTATGTGTAGATATTCTCTTGTAACATGGTGGTGAAGATTGGTTGTATCATGTGCAGGCAATTTTGTCCATCATGCATGATGAATAAAGAATCTTGTGAACAATGTAAAAGGGGTGCAATCTGAATGCATCGACTCTTGTGCAATCTTATTATTGAAGTTTGTGTCTTTCATG