Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01356	LG1	16223037	16227856	PREDICTED: BEL1-like homeodomain protein 7	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding

SNP	Position	Effect	Amino acid change
T/A	16224165	5_prime_UTR_variant
T/C	16224170	splice_region_variant&intron_variant
A/T	16224175	splice_acceptor_variant&intron_variant
G/C	16224177	splice_region_variant
A/G	16224237	5_prime_UTR_premature_start_codon_gain_variant
T/C	16224405	synonymous_variant	p.Ser17Ser
C/T	16224414	synonymous_variant	p.Pro20Pro
C/T	16224418	synonymous_variant	p.Leu22Leu
T/C	16224423	synonymous_variant	p.Pro23Pro
G/C	16224524	missense_variant	p.Gly57Ala
C/T	16224788	missense_variant	p.Ala145Val
C/G	16224816	synonymous_variant	p.Ala154Ala
A/G	16225023	synonymous_variant	p.Thr223Thr
C/T	16225183	synonymous_variant	p.Leu277Leu
G/T	16225191	missense_variant	p.Lys279Asn
G/T	16225280	intron_variant
T/A	16225366	intron_variant
T/A	16225367	intron_variant
G/A	16225420	intron_variant
T/G	16225608	intron_variant
T/G	16225641	intron_variant
A/G	16225652	intron_variant
G/A	16225890	missense_variant	p.Met303Ile
T/A	16226223	intron_variant
G/A,T	16226410	intron_variant
A/T	16226463	intron_variant
T/G	16226501	intron_variant
G/A	16226506	intron_variant
C/T	16226548	intron_variant
G/T	16226609	intron_variant
T/A	16226673	intron_variant
C/T	16226694	intron_variant
A/T	16226714	intron_variant
T/G	16226785	synonymous_variant	p.Val437Val
G/C	16226869	missense_variant	p.Glu465Asp
G/A	16226977	synonymous_variant	p.Gly501Gly
G/A	16227340	synonymous_variant	p.Gln622Gln
C/G	16227629	3_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01356.2

MYSNQAFSSGSYADMLSGNPLLPHNYSETVGGQNELKFMTSMRDTMTVQSIDGHSNGAPTAGQDSFSNAGDSHSHLVPRTTQLGLVDSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVPNLKGTSSLKDDEASLQRELRNAECMASLASSGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPSNSAANTSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLPSENAVKAPRDDVQSSDSKREESQDNLITVDDSVIQHHGLKLDHASELDRGIQSSDHGENAMDPRIGKLQDGQRFNINNSNSSYYGEGCIIAPTTATYDLSELGNIGVGGQVSLALELRNCESEGFGVSNDDMHRRRKKTLASSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV*

>Vu_01356.1

>Vu_01356.3

CDS Sequence:
>Vu_01356.2

ATGTATTCAAACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCCCTTCTACCTCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCAATCTATTGATGGGCATTCAAATGGGGCCCCTACAGCTGGTCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCCCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTCATGCCTTCTATTGCATCAGTCCCCACCTTTCCATACCAGTATCCTGGCGCAGGTTTCTCTTCACTAATGACTGCTTCTGTTCCAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCAGTGAAGGCCAAAGTGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCCTTGAAGCAAACAGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCGGGGCAGATATCTTCATGTCCCAGTAATTCTGCTGCAAACACTTCATGTGAGCTCTCACCTGCAGAACGACAGAATTTACTGGACAAGAAGACAAAACTTTTATCCATGTTGGACGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATGGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCCGAACCTTACACCGCGCTAGCCTTGCGCACAATATCACGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTTATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATTCTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTTCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGCGATTCCGAGATGAGCAGCAATCTACTGCCATCAGAGAACGCAGTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACTTAATAACAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCGGAGTTGGACAGAGGGATTCAAAGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGATGGCCAAAGGTTCAACATCAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTACTGCCACATATGATTTGTCAGAGTTAGGTAACATTGGTGTAGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTGTGAAAGTGAAGGGTTTGGCGTGTCCAACGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATCTGCTAGATTACCATTTCACAGACCAAGGAAAGCAGCAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGA

>Vu_01356.1

>Vu_01356.3

Promoter Sequence:
>Vu_01356::LG1:16221037-16223037(+)

GATGAAATTTGAATTTTGTATTGTTTATTTTTAGATTAAATATGTTTTTAGTCTTTTAGTTTTCAATAAAAATTATAATTAGTTTTTCTTTGAAATTTTAGACTAATTTAGTCTCTAGTTTTTAAAACTGCGTGAATTTAGTTATCAATGTTTCAAACACATTTTTTGATATGTTTATACTATTTGACACATTTCTGAACTCATCAAAATTTGGTTAAAATGATTAAATCTATATATTTCTAAAGTTGAGAGACTAAATTGAACAAAATTTTTGAAAATAAACTAATTCTAATTTTCAATGAGAGTTAAAGAAAGAAAAAACATATTTAATCTTTTTCTTTTTTTTATTGTCTTTTTATTATACCTTTAAAATGGAATGATTTTAAAGTAAGCGTAATTAAGTGAAAGTCTTACACTAACACAATAAAACGAAGGTAGTTAATTATACATTGAAGAAATAAAAGATGCAATAACTGACTCTGTTTCGGATCCAGCTAGCTAATAATAAGTAGCAAAGTGTATGCTAAAAAGTATAGAGAAAAGTGATTTATAATAACACCACACGACCTAATAATTAATTAATGATAGTTAGAGATTAATTAATAAGAGATGGTGTGCAGTGGGTTGTGGTTAGATTTAGAAGGCATAAAACACACACCTTGACCTACTTTTTATTCTTCTTTCATCCTTTCATTTTCATTTTCCATTCATCAGACAAAGACATCTTCTCTGCTCACAACCAATCTTCTTCTTCTCTCTCTTTGCTCATCTTCTTCTTAACACACCAAGAACATAACTTGTTCATGATTTGTGAGTTAAGTTATGTCAAGAACCCTTAAGAAGGAAAAGGGTTACAACAATTGCATTTCATTTCACCTCCACCAACTGGTTGTTAGCCTTTGAACACTTCCAAGCAATAATATAAGCAACCAATCAACCACCCTCTCAAATCTTCTATTCTATTTCATTCCTCCCATTACACCATCAAAACCTATATTTATATATATGTATATTCTTCTATACTATATAGTTTTTTTAAGTGTTAGATTTGTCACATGTGATAATAATTCTCAATACAAAGATTTTGATACTGAAATTTACTAATTGTTTATGTTAAGAAAATTTCACTATACACTCTGATATGTTGGGTATAAACAAAGTCTCACATGAGATAAAATAAGAGATGAATATGAATTTACATACATATATTACACTTTCATTGCTAAGAGACATTTTGAAGTGGTACTAAAAACAAATTTGTGAGAACTTGATTCAAAACGGACAATATCTTACTAGTGTGTGTTGAACCTCCTCTACTTTAATTCATTTCTTTATTTTCTTTTTAATTTCACTATATGTAAATAAAGAAATATGTATATAAAATGTGAATATTGTCTTTATATATGTAAATAAGAACGTCGTTTGTCGTTTGCATTATTTTTATTTGTTGAAATTATATGAAAAGAATAAGTTCTTTTATATTAACTACCTGTGAAATGAATTGACATTTTTTTTCATACATTTGTAGTTCTTTGTGAAAATATTTAAGCGTGGTTTTGCATTAACGATATTAAAATAAAATAATATAACATCAATTGATTCATGTGCTCAATGATGATATACAATTTTCGTTGGTCGTATATACTGTTTGCCACCGAACATGAATTTTTAATTTATTGGATAACGAAGATATTATTGAATTAAAAAATGAGAGAGCAATCTTCTAAATTGCCGGTATTCGTTAAAGATTAAATCTTTTAATGTATATTTTTCTGGGTGAAGGTAAAATGAAACTTCTTATTAGATGTTTAAGAAAAGAAGGTAATCTAAGAAGTTATGGAGTGTTGGAAAGATTGGTTTTTTATTTAATAAACCATGCAAAAGATTTAATTAATAGACATAAATGATGTATATAAGACGTAGACGTGTGGAAGTAAGAAACCAATTTGTTTGATTATTTAATTATTTGATTAAAAATGGTTTTGTTTATTCATTGGTTG

Gene Sequence:

>Vu_01356(+)

GGTGCAGCTGGTTGTTCCAAAGATAATTTGAAATTTATATGTCTTGGGATTGCCATTTGTCTGGGCTTCCCCAAACTGTGGATTCTTGTCTGTAATTTTGCTCTAAACCTCTCTTTTTCTTCTCTTCTCTTTTCTCTTCCTCCTCCCACTTCACCCTGCTCCTCTCCTTCTCTTTCTCCTTCAGGTATTTCTCTTTCCCTCTTCTCTCTCTCTCTTTTCTCAAAAACACCACAATACTTCACAACACACACTTCAGATCACTATCATCATGCTCTTTACTGTTTCTGCTTCATCATGCTAGATGCTACTTCTCCTGCCCATAAACTCTTGTTCTAACAAAAGGGGTGGTGGGGTTTTCACTTTTCATCATTAAAAGTATAAACTACTATCCAAAAGCTACTGTTGAGTGCAAAAGTTTAAATTATGCTTCAAAGGTTTCGATTTTTCACTCATTATTGTCTTCTGTTTTTGATTGACCGCTGCAGTGTTTCTCTTGTACCTTTCTTCTTTTCACTCCTCAATTTCACTTTTTTTTTTCTTCTTCTGTGTTCTGAACTCCACCTTGCTTCTTTGCTTTTCACTTTTAAGTTTTAACCGGCACCGGCAGCACCGCCGTAGGGTTTGAACTATGAAGCCAATTATGCCTGTGGGATTTTGGTTTCACACCTCTTTTTTCGGTTTTGTTTTGTTTTCTGGTTTGTTTCCATCGTTTTCTGCTACCTCGTACCTCCGTTTTTGACTTGCAACCCGCAAAAACAAAACAACAAAAGTGAAAGAAGCTTCCTTTGGTCAATTTACTTAACAGGGTAAACAAAGCCTTTCTTTTCTTAATCTATGGAAACGAAAACATGCTTTTGGCCAAACCCCTTTTAACTCCTCACGTCGTTTGAAGTTTAAGCCAATGCTCGTGGTTGGTTAATGGTTCCGGGTGCACTGTTATGGTACAAATATGTGTATGCTATAGATAGTGATATAATGTGTCTCTGATTGCTCTTGCTTGTGATGTGGTGCTTTTGCTTTATAACAACGTAATCTTTTCCTTTGATCATACGTGTCTTCTATTTTGTTAATCTTTCCCTTCATTAACTTTTTCCTCCTTTTCGATTATTTTAATTCAATTTAGGTCTTTATTGTGATTAGGTTTTGTTTTTGCAGCATCATCATCGTTGGTTCAATCTTGTAGCAGAGGTAGCATTTTATATTTAGCTCAGCATCACTACTGCTTTCTTGAACCTAAGCCGCAGAGGAGATGTGTATCTGACTCAGTCGTGAAGGGACCAGAAACAGGCACTTTTGAATTTGAGTTATAAATTTTACAATGTATTCAAACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCCCTTCTACCTCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCATGAGGGACACAATGACTGTGCAATCTATTGATGGGCATTCAAATGGGGCCCCTACAGCTGGTCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCCCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTCATGCCTTCTATTGCATCAGTCCCCACCTTTCCATACCAGTATCCTGGCGCAGGTTTCTCTTCACTAATGACTGCTTCTGTTCCAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCCGAGTGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCAGTGAAGGCCAAAGTGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCCTTGAAGCAAACAGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCGGGGCAGATATCTTCATGTCCCAGTAATTCTGCTGCAAACACTTCATGTGAGCTCTCACCTGCAGAACGACAGAATTTACTGGACAAGAAGACAAAACTTTTATCCATGTTGGACGAGGTAGGCATCTAGACTTTGTAGCATTGGATTACAGCTATTCCCTCTTTTCTATTCAGTTGATATAATTGCCTTGATCTGTCACCAGTTCTTTTGTATTTCATATAGTTTGTTTTCAAGTTTTTGTTACACATAAAAGTATTTAGTTTGTGTAGTAGTTTGTTTTCAAGTGCAGAACATTTTATTTCGTATTGTATTTAGGGAGAACTTTGGAATGAAATGGTATTGTTTTCCTGAAAACAATAATTGCACAACATGCTTAAAATAAACATTGTACCTAACAGCTTAAGCTTTTGTGCAAAGTTATTTACTTAACAACCTGTACAACTTTCTAATTTTGTGTTATTATTGTTCCTGGAAAAGTGTATGTGTTGAAAGAGGTAGATATATATTTATAAGATTTATTAGTAATAAATAGCAGTTAATTGGTCACAGAACAAAAGAGTAAAACGACTTTCTCTGTGGTAGATTTTTAGTTATCCCATTTAGTTAATTTTATACGTATGCTACATTAGTGATTGTTTGAATTGTGTGTACTTAGATAATAAAAACTCAAGTATTTCTAGTGATTAGGAAGATGACATCGTTAGCTTTTGACTTAGCTCTTATTGTTTTTCTTTGCTCTGGCAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATGGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCCGAACCTTACACCGCGCTAGCCTTGCGCACAATATCACGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTTATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATTCTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCGTAACTCCCCCTATTCTGTACTTAATTTATTTTATGTTTCCTATATAGTATTTTGTCTAATAATTGTTTTCCATTTTTCATTTGGTTCCAGTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTACGGTAGTTAATGTTTTTTAAGTTGCAGAAGATTGTATTAGTCCATGTTTAGGAGTGATTACTTGTGTGGAATAATCACTCTTTTTCAAAGCTGATTGTAAAGAGTAAACAGTGTTTGCACTAGCAATTTAATTAAAAGTTGACATGTTTGTAAGTTTGTTAATATTTACAATAATTATCTTAAAATCAATACCACTGATTCTTGAATTCTGATTAGTTGACATTTTAAAATTTCTTACGCAAGCAATGCTTGGACATTACACATAAGTAGTTGTTTTTCGAAATTAAGCTGAATCAAGCACATTAATTTGGTTTTGTTGGGGATCCAACAGTAAAATCAGTAACCCCTTAAAGTTTTAGTCTTTATTATGCTTGCTAATCTTCATTTGATTCATGTTAGGTGGCAAATTGGTTCATTAATGCAAGGGTTCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGCGATTCCGAGATGAGCAGCAATCTACTGCCATCAGAGAACGCAGTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACTTAATAACAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCGGAGTTGGACAGAGGGATTCAAAGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGATGGCCAAAGGTTCAACATCAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTACTGCCACATATGATTTGTCAGAGTTAGGTAACATTGGTGTAGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTGTGAAAGTGAAGGGTTTGGCGTGTCCAACGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATCTGCTAGATTACCATTTCACAGACCAAGGAAAGCAGCAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGATTAAGGGTGAAGGGAACAATGGTAATGTGTACCACCAAAATAGTTAGATAGACAAAAAAAGCCTATGTTGTTATTTTACTTGGTTGCTCATTCTTGTTGTCCACAGTTCATGAAAGTCATGTAAATCATGAACCGTACAAAAATACACACGTAGGTATGTGTAGATATTCTCTTGTAATATGGTGGTGAAGGGATGATTGGTTGTATCAGAAATGCAGGCAATTTTGTAAGGACAAGGAACGTATCTTGTGCATCATGCGTGATGAATAAGGAATCTTGTGAAGAGCGTAAAAGTGGTACCCATCTGAATGCATTGACTCTTGTGCTCTCACGTCATTGAAGTTTGTGTCTTTCATGAATGACTATGCTTCATAAACCATAACTTCTTCATGTACAAGGAGTACAATCATATTGATTACTTTTGTTAATACTATTTGCCTTTGAGTTTTTTGGTGTTGATTTGAATGC