Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01333	LG1	15986778	15988866	PREDICTED: protein SHI RELATED SEQUENCE 5-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	mRNA transcription, mRNA transcription, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, mRNA transcription, mRNA transcription
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	DNA binding, protein binding, DNA-binding transcription factor activity

SNP	Position	Effect
A/C	15988650	upstream_gene_variant
G/T	15988654	upstream_gene_variant
A/C	15988667	upstream_gene_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01333.1

MAGFFSLGGRHNKAEDEEDHREDNNNNNNTNSQFLFRNVNDEIYNTNKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNTANNSSSNNVNDDVSVSFSDESNRFGFTVMRSGGGVGGGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAVLQQQNQPPQFRGDHSKRHRESIEGVAAGGSLACAPVPITTTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVDGPYASAGCEGSSGGGGEARPLALMAATTTTTTAGNPFDASLYPAPMNAFMAECGCGYVVGAELEAAFLFPRLSVGLPDQNGTK*

CDS Sequence:
>Vu_01333.1

Promoter Sequence:
>Vu_01333::LG1:15984778-15986778(+)

GAATCTTGAAGAAATATTTTAGAAGTGTCAAAATAGATATATTAGAATTTTGGGGTGACAAATATATAAGATATATTAAAATTAAAAAAAATTATATATTAATTAACATGTTTGAAAAATAAAATGGAACCACCAAAGTAAATTGAGAATGTAAGAGAAAGAGAGAAAAGATGAATGGAAAAAGAAAATTGAAAGAGATAAAAAATATATATTATCATTTTTTTCACTTCATCAACTTAAGGAAATATAAGTAACTAATCCTATGAAAGAAATAGATTATTTAAAATTATTTAAATGGAAGAAGATTTGCCACTTGAGAAAAATTTTCAAGATAAGAATTAAGACAGGATCAGAGAATTCTCAAGACTTTCATCCAATCTTAAAAATATAGGGTTTGACTCTTTTTTTATGAGCATATACCGATTTTGAAGAGGAAAAAACACACATAAAATGTTTAGAAACATTAGAACATCAAAATGTGAATATATAATACGACTTAAGCTAAATTTAACCCAACTAATTTTATGTTTTTAATATTCAATTAACTTGTAATCAATCCTAACATAGAAGTAGTTGCTTAAAATTAGGAAGGTACTTGTTAGTTTCAAACATTAAGAAAAACGTTATCCTTATATTTATATTTTCAAGAATATTTTAATCTTTAATTTATATATTACGGAATCGGTAATATATCCTCGCCGCAATAACGCGTGACGAATATTTTAAAATCGCGCTATTAAAAAAACACTACATTTTATTCTTTATTAATAATCAGTTAATTAATCTTGAAAAAAAAAAGAATATATTTGATTTTATGGATGATGAGAAGTGGAAGCGAACATGGAAAAAGAATATGATGTGGGAGAGGCGTCTGATGGGGAAGTGGAGGAAGAATTGAGCGGTGATGGGGACGTGTGAGGAAGGTAAGTGCATGTGCGTGACGCAGCGTATTGGGTTTCCTCTGCTGTCATGTGTAGAATATCATATGTGGTCGCTTCACACCATAAATATCGCAAGAAAACAATCTTAATTATGGCCACGCTCAGACAAAGTACCACCGGGTTTTCCGCTGCAAGGACGAATAACAAAAACACAGTGACGCGACACGTGGAACATCCTCCACCCTCCGATGGTCAAAATTCCCGCAGATCTATCGAATTCCAGACTCAGAACTTGGCAGTCCCAGATTTTGTTGTTCCCCCGTCTCACATCACAAACACCAACACCAGCACCAACACAACAAACACTCTCAGTTTGAGTCTGAGTAAGCACAAACACAACAACACAACACAACATAACATTTCTTTCATTTCCCAACCACTCTCTCTTCTAATTCTTCGCTGCTTCCACTTCTCATGGCGGCGTAGCAGACACTCTAATTCCCTGCCATTATTGCGCCACACAAACACCAACCATTTCTTTCGTTTTCTCTCTTTTTCAATATCGCTTTTCCTCAAAACCTGCAAAACGTTTAAATTCACCAAAAAATAAAAACTTAATCTTTAAATTTTACTGTCACGTTCGTTTTTAAAATATCTCACCCTGTGGGTTGATGAAAGAAACAAAATTGAAGGAGAGGACGTGGTTATTATAGTTTTTACGGTTTAAAAACGAAAGTAATGGGAATTTAGAAATTTGGGATGTGCACCTAATTTCTGATTTAGTCAGAAAAAAGGAAGAGATCAGAAGATCATAGTTGAGACGCCCCCACACGGTCTGGGCACAGTGACAGAGTGAGAGTCAACAAGACCCACAAAGGAAAAAATAAAGAAAAAAAAAGGGTTTTGAGTGGGTGGAAAATTAATAAGTATTAGTATCGGTCAGAAAATTTATTAAAGATGCACTTTATATGTAAAACCCAAAAATATTAGTATTACAGTTGCGGGGTGTGTGTCTGAAAATATATAAACCTGTGAAGAACTGTTTAAAGATTCGCGAAGGTTCTTCTTTCTGATATGGATATTATCTCTGAATTGGGGATCGTAGAGTGCAACAGAGCA

Gene Sequence:

>Vu_01333(+)

ATGGCGGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCAGAAGACGAGGAGGATCACAGAGAAGACAACAACAACAACAATAATACTAACAGTCAATTTTTGTTCAGAAACGTTAACGACGAGATCTACAACACCAACAAGGGCTTCGAGATATGGCCACAATCCTCGTACCACCACAACTTCACCAACTACTACTCCTTCGGTGTGGGCCCTAGTCGCAGGAACAACACCGCCAACAACAGCTCCTCCAACAACGTAAACGACGACGTTTCTGTCTCTTTCTCGGATGAGTCCAACCGCTTCGGCTTCACCGTCATGAGGTCCGGAGGCGGCGTGGGAGGCGGCGGAGGCGGCGGGATGAACTGTCAGGACTGTGGCAACCAGGCCAAGAAAGACTGTTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAGACTCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAACGCCGTGAACGACAGCAACAACTCGCTGTGTTGCAGCAACAAAATCAACCACCACAGTTTCGTGGAGATCACTCCAAACGACACAGGGAAAGTATCGAAGGTGTTGCAGCCGGTGGTTCCCTCGCTTGCGCTCCAGTTCCTATCACCACCACAGGTAAAAGAATAAATTACGATGAAACACCATATATACACATACGATAGAAAAGTTCATAAAATGAAAATCCTTCTTCGTGTTGTTAAACTATATAGGTATTTGAGTCTATTGGATGAGATATTATTGCTAGAGAGATCAAGATACAGTGAGATCTCAAGCAAGTATAGCCTTCTATGTCTGATACCTAACATCTATGGTCCATATCACTTCACTCTGAAAGTGAAATTCTCTTCCATAGTTACCCATCACCACCTTGCTTTTTTTTTTTCCACTCTCTCTCTCTCTCTCTCTTTGTTATTCCATTACTGTTAATAAGTTAATCTAATTCCATGTGATCCGTTAGAGGGAGAGAAGAAATCGGAGCTAGCTAGCTAGCTACTAGCTTCTTTGATTTACATGAACGGTTTAATTTGATTTGTGGTTCTGATGAATCTGTGGGTTGGTTGGTTATTGGTTAGGGTTGGAGGTGGGTCAATTTCCACCGGAGCTGAACTCGCCAGCGGTGTTTCGGTGCGTCAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTACCAAACCGCAGTGAACATAGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAGTGGACGGTCCTTACGCCAGTGCAGGTTGCGAGGGTTCCTCCGGTGGCGGCGGTGAAGCTCGGCCACTCGCTCTCATGGCCGCCACAACCACAACCACAACAGCTGGAAACCCTTTTGACGCTTCACTCTACCCGGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAAGGACGTTTCTCTCTCTCACTCTCTCACTCTCTCACTCTCTCTCCTCTCTAGCTAATAATGATTGAAAGTTGAAACCGGGTATTTGTTTTTCATGGACTCTTATAATTAAGGTTAAGGTTGTTGGGTGTTATATGTGCATCGATCTTAAGTTCTTAACATCATCAGCTGAAGTAGCTGCTACTAGCTAGACTAGTTAAGAGTTCGTCACAAATGATTACGTCGAAGATGATGATTCACGAAATTAAAGGGAGCCTGTTTATTTTGTTTAGTTTTTTGTCCGAATCTCAGTTCAGATTTTCATGTTGTTTCGTTGTTATCGAAATACTCACTTCTCATTCTCGATCAATTCCATTGCACATCATACACTCTAATCTAATCTACTACATACTATATATTTTCATTTGGAGCTAACAGCATTTGGATGTGTGCTTTCTTCTTATTATTATTATCATTATTATAATTATTATAATTATTATCACTGTGTGATTAATTGGATTTGATTTGTTTATAGTATTTTCGTTGTTGTGGATTAACATTAAGAGTGTGGCTGTGGCTATGTGGTTGGTGCTGAACTCGAAGCTGCTTTTCTTTTCCCCCGTTTATCCGTTGGTTTGCCGGATCAAAATGGAACGAAATAG