Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01324	LG1	15889441	15892655	PREDICTED: transcription factor RF2a-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	reproductive shoot system development, reproductive shoot system development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, reproductive shoot system development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, reproductive shoot system development
Cellular Component	located in	cytosol, nucleus, nucleus, cytoplasm
Molecular Function	enables	sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein homodimerization activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding

SNP	Position	Effect	Amino acid change
T/A	15889453	missense_variant	p.Asn646Tyr
T/A	15889493	synonymous_variant	p.Gly632Gly
G/T	15889499	missense_variant	p.Phe630Leu
T/A	15891261	missense_variant	p.Gln399Leu
C/T	15891267	stop_retained_variant	p.Ter397Ter
G/A	15891340	stop_gained	p.Gln373*
A/C	15891618	missense_variant	p.Val280Gly
A/T	15891893	stop_gained	p.Cys188*
T/A	15891968	synonymous_variant	p.Leu163Leu
T/G	15891973	missense_variant	p.Ser162Arg
C/A	15892035	stop_lost	p.Ter141Leuext*?
C/A	15892045	missense_variant	p.Gly138Trp
A/G	15892061	synonymous_variant	p.Cys132Cys
A/G	15892063	missense_variant	p.Cys132Arg
A/G	15892342	downstream_gene_variant
G/A	15892395	synonymous_variant	p.Leu87Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01324.1

MKGKKQYPRSSEVDTRMPFISRPEEKKETLTNLPSSAHNTTTSSSSSSDTSASHVLSLETSSASPWNFPASVTQNTHSASDIIYSCLCHRAEGLAVVESMEGVDQSNLKRNGSGFGSSSGANLRPPNRLNTAVPVSQLGVAENQKPYGIPPSHPNTNISPSSAYPQFFGSQSHSNSVSQRLGSPNLSSVSSHSRSLSQPSFFSLDSLPPLSPSPYREPSVSDPISLDLSAEESLVNPHAPLPNRGPALQLGHSLPPRKGHRRSSSDSPLGISDFIQSAPQSVPSRTWSDRDVSRGGNSGYEKPIQLVLKEPIKSMDRVDGFGGEPVVGRKEDDSLDDLFSAYMNLDNIDTLNFSGMEDKDLDSRTSGSKTVESSDNEVESHANGKTTGAQGASSSCSEDRREGVKRSSNGDIAPGSRHRRSYSLDSSIGNFHIGDESPKLPPLQNRGGQHSPSNSLEGKTSETSIEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSENNEYKLRIQALEQQSQLKDALNETLDAEVRRLRRTVADLGGESLLSSRMAQQLAISQQMFPLQHQQHPNQLRHGQLHNSHSQEQTQTQSQRQNGKATAY*

CDS Sequence:
>Vu_01324.1

Promoter Sequence:
>Vu_01324::LG1:15892655-15894655(-)

TCTTTTATAATATAATTATTAACACTTTTTTTAAATATATAATCATTAACTGATTTTTTTTATAAGTAATTTCTATTTTAAAATATTTTGTATAGTTTTTTTTTATTTCTTAATTATATTTATAGCTTTTATTATTGATATTAAAGTACTTCTTACTACTTTCATGGTTGCTTTCTTATATATTATCTTAATCAATTAACATATATTATTAACTTATAATAAAATATAAATATTTTAAAAATACAGATATGTGATAATATATATGTTTAGACTAGTAAAATATAAAGTTGATAATAAGAAAAAGAGATAAGATAATGAAGATTGATCTCTTATAAGTGTGGTGGGTTGAGATAGAGAATTAAAGAAAAAGGACGTGATTAGAAGTTTTATATCCCATATATGAAAAGAGGTAGATACAAGTTAAATGGTACAGTTAGTAAAAACAAATAAAAATCAAAATAAAATTGTGGAAGATATCTAAAAAAAATCACAAAATTTCATATTTTAAAAAATTCCAAAAAATAATGAAATATAGTCTAGATGCTATTAAAACATATACTAGGAACAAAAGAAGATTATAACCAAGACCCTGAGATAAAGAAAAGGATACACAATTTCTAAATAAATAACTTTCTACTATTTGTTTTGAGTTAGTTATTTTCTAGCCAAAACAAAATGGTATCCATTATGAGATCTAACATTCTAGTTCGGTTAGAAGCATACTGTAACTTGACTAAATAAATATGTAAATTCGACATTTCGATTTGATTGGGAATAAACCGTGATTTGACTAAATAAAAATGAAAATTCGACATTCTAGCTCGCCTGAGATCATATTCTAATCTGACTGAAAAATGCAAATTCAACATTTTAGATTGACTATAATAGATCGTAATTTGACTAAACAAAAATACAATTTTAACGTTCCAGATCGGTTGGGAACAGACTGTAACTTGACTAAACAAAATAGCTTGACTCAGAATAAGTTATAATTTGACTAAACAATGTAAATTTGACATTTTAGCTAAGTTAGAAGTAGACCATACAAATCCAACATTTTGAACTATAACGTGAATAGATAGTAATATAACTAAATAAAATTACAACATTACATTTCAGCTAGACTAAAGATAAACCATAACCCAATTAAACAAAAAAGCAAATTTAACATTCTAAAATAAAAACTAATATTTTATGTCATGTTATTCAAATTGAACATCTATTTATAAATACAAAATTCAATTCAATAATACAAAGCAAGAATTATAAATATTTAAATCTCATGAAAATTAATCAATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTAACGGATAACTATAATATTTTTATTTGTATATATACGCGGTCAATATTTTACACCCCATCGATTCAATACATGTTTACTTGACCGTTAGTTTTGACCATGAAACACAAAATACAAATTTAGTTGTTTTTAATAAACACGATTGATTTTTGCAATATATTTTGAATTTTCAATTGGGCCTATGGTTTTTGGGTTAAAAGGAAGACATAGCTCAAATAAAATAATAAACTGCGTAAAAAAAAAATCATAAACGTTGATCCAAACATAGAAGAAATGTGACGTGTGGAAACGCGTATGTTGTGTCTACATCAAAACAAGATGTAAAGTTGTTAAAGCATATTGACTAATTGGGAGTTTCCTATTACGTATAGATTTCGAATCAATTAGATAACAAATAAATAATACTCTATACTTATACACACCACCATCACCTACTTACAATAATTTAAATAAAAAATAACTTCAATGTTGTCCTCTTTTTTATTTTTTTTTCAAATTAGTTTTGCCGTAAAAATTGTGAGTTAAATAAAAAAACAAATTTGAAAAGAATTATAAAAGTATTATAAAACATGTTAATTAAAATTTGATGGTAATTTTTTCTTTTTAATTTGATGTTAAAAAAATAAAACGGAGTCCGGAA

Gene Sequence:

>Vu_01324(-)

ATGAAGGGAAAAAAACAATATCCGCGTTCCAGCGAAGTTGACACGCGCATGCCATTTATTTCACGACCAGAGGAGAAAAAAGAGACACTCACAAATTTACCTTCTAGCGCACACAACACAACCACATCGTCATCTTCGTCCTCCGACACTTCAGCTTCTCATGTTCTTTCTCTAGAAACCTCTTCCGCATCACCGTGGAATTTTCCTGCTTCTGTGACACAGAACACACACTCTGCTTCTGATATAATTTACTCTTGTCTCTGTCACCGTGCTGGTTGCAAGATAGGGTTTGCACTTTTTAATCTGCTCTGGCTATGACCAGGTACACAAAGTACTGTGTTAGTTAGAACTTTCTGCAATTATTAGCAATTTTTTTTCACTGCACTAGCCTGGGTGAATTGTGTGTAAGGATTTTGAAGGTTTGTATGTGTTGATTGGTGAGTATTGTTGAAAGTTGTGATTTTTGAGTAGAAGGGTTGGCGGTTGTTGAGTCAATGGAAGGTGTTGATCAAAGTAATTTGAAACGAAATGGTAGTGGTTTTGGTTCATCATCGGGAGCAAATCTCAGGCCCCCAAATCGATTGAATACTGCTGTGCCTGTTAGTCAATTGGGTGTTGCTGAGAATCAGAAACCCTATGGTATACCACCCTCACACCCTAATACGAATATTTCACCTTCTTCAGCCTATCCTCAGTTTTTTGGCTCCCAATCCCATTCCAATTCGGTTTCTCAGCGTTTGGGTTCTCCCAATTTGAGTTCTGTTTCATCCCATTCTAGGTCTCTGTCTCAGCCCTCTTTTTTCTCTCTGGATTCCTTGCCCCCATTGAGTCCTTCTCCTTATAGGGAGCCATCTGTTTCTGACCCAATTTCATTAGATTTGTCTGCTGAGGAAAGCTTGGTTAACCCACATGCCCCTTTGCCTAATCGTGGTCCTGCACTTCAGCTTGGCCATTCTCTTCCACCTCGGAAAGGACACAGGCGATCCAGCAGTGATTCCCCTTTGGGAATCTCTGATTTTATCCAGTCTGCCCCTCAGTCGGTTCCCTCCAGGACTTGGAGTGATCGTGATGTTTCTAGGGGAGGGAACTCAGGATACGAGAAACCGATTCAGTTGGTGTTAAAGGAACCGATTAAGAGTATGGACCGTGTTGATGGTTTTGGTGGGGAGCCTGTGGTTGGGAGGAAAGAAGATGATTCACTGGATGATTTGTTTAGTGCATATATGAATTTGGACAACATTGATACTCTGAATTTTTCTGGTATGGAAGATAAAGATTTGGATAGCAGAACCAGTGGTTCCAAGACTGTTGAAAGCAGTGATAACGAAGTTGAGAGTCATGCGAATGGGAAAACAACTGGTGCTCAAGGGGCTAGTTCAAGCTGTTCTGAGGACAGAAGGGAAGGAGTTAAGAGGAGTTCTAATGGGGACATTGCACCGGGATCCCGGCACCGGAGAAGTTACTCGTTGGACAGCTCCATTGGAAATTTTCATATTGGAGATGAATCACCTAAGCTTCCTCCTCTGCAAAACCGGGGTGGTCAACACTCGCCTAGCAATTCACTAGAGGGTAAGACATCTGAAACAAGCATAGAGTTTGGAAATGGTGAATTCAGCTCGGAGGAGCTAAAGAAAATAAAGGAGAATGATAAACTTGCTGAAATTGCCATGGCTGATCCTAAACGTGCAAAAAGGTAATAATAGTCTTATGTTTTACTGTTTTTATGTTGTTCTCTTTTGGTGGAAAACAACTAAGACTCTAAAATATTTGTCCAGGATTTTGGCCAATAGGCTATCTGCTGCTCGCTCGAAAGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTGAAAGTCCAAACACTTCAGACAGAGACAACCACATTGTCTACTCAATTTACCAAATTACAGGTGCGTGCCTTCTGAGTTCAGCCGATATTTTTCGTCAAATTGTCATCTATATTTTACTGTGATGAATAAAATGTTCCCTTTCATCATTCCTTTATTCTTTTTCTCCCGTTTCTTTTGTTGTGCTTGTCTGCAGATGGACAATTCAGAGCTTAAAAGTGAGAACAATGAGTACAAATTGAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGGTATGGATTTACATTTTCTTCTACTTAATGTATTAGCTCAAATCTGTTTTTGCTTATTCTAACCTGTAAAATGTGAACTTTGTTGTTTTTGTACACACCACTTTTACGTATGATCAGGTTCAATGATGTCTGCTTTTCATTTAGTAAACGGATTTTATGTGCTAACAAGGTTTACTGTATGACAATTTTTAATGAATACAGATAAACTAATCAAACTTGTTCTGGTCCTCAACATGTAAATGGCTGATGTTATGTTACTAAAACTGGAGTGATTTACTATCCAATTATATTCAGGGTACCTGCACAACTCACCTTTGAAATCTACCTGTCCAGCTGGAATTTACTTTCATTTTTACAAACGCTTGTAAAGTACATTTTGCACCAGTACTGCGTTTTTCTGATGTTCTATTTTGTTTGTCATACCCTTTTTAAAACTGTATATTTAAAGATATTGGGGCCATTTTGCCCACATATTGGTGTCACTAAAACACCCTTAATGCCAAATAGAAAGAAAAAAGAGAGAAAACGAGACTTGGAAGGAAAGGTAGCTCGTATAGTCAAGGTTCAAGTATTTGATATTTTGATGCTTGATACAAATGGTCAGAACCTGTTCTAACCATGATTCTTACTACAACTTTTTTGGCTTCATGCCTAATGCCTCTATCAACTGTGACTTATTTCATGATTGTTGCAGTTATAGTGTATGTAAACTATCATATTTAAGATCAAGTCATTAGCAATATATTTTTAGCATCTTAAACTTGTAATTCAGAAATATGTATCTCCATTTCATCATCTCTCCTTTCTTCAAATGAACAAAAATTCATCTGCATGCTTATTTTGGCAGCTCTGAATGAGACTTTGGATGCCGAAGTGCGGCGGTTGAGGCGCACGGTCGCAGACCTTGGCGGTGAGTCCCTCCTCTCGAGTCGAATGGCTCAACAGCTTGCTATTAGCCAACAAATGTTCCCGTTACAGCACCAGCAGCACCCTAACCAGCTTAGACATGGTCAACTGCACAACAGCCATTCCCAGGAACAAACACAGACTCAGTCACAGCGCCAGAATGGCAAAGCAACAGCCTACTGA