Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01277 LG1 15418294 15423171 PREDICTED: calcium-dependent protein kinase 29-like isoform X2
Map

Annotations  
category   relationship type   keyword
Pathway   B 09159 Environmental adaptation   C 04626 Plant-pathogen interaction [PATH:ko04626]
SNP Position Effect Amino acid change
G/A 15418309 3_prime_UTR_variant
T/G 15418428 3_prime_UTR_variant
C/A 15418442 3_prime_UTR_variant
A/T 15418451 3_prime_UTR_variant
G/C 15418469 3_prime_UTR_variant
T/C 15418505 stop_retained_variant p.Ter524Ter
T/C 15418556 synonymous_variant p.Ala507Ala
G/A 15418598 upstream_gene_variant
G/A 15418633 upstream_gene_variant
C/G 15418644 upstream_gene_variant
C/G 15418651 upstream_gene_variant
A/T 15418739 synonymous_variant p.Thr475Thr
T/A 15418800 upstream_gene_variant
A/T 15418811 upstream_gene_variant
T/A,* 15418827 upstream_gene_variant
G/C 15418839 upstream_gene_variant
C/T 15418845 upstream_gene_variant
G/C 15418847 upstream_gene_variant
G/T 15418868 splice_region_variant&intron_variant
G/A 15418911 synonymous_variant p.Tyr451Tyr
T/A 15418945 missense_variant p.Asn440Ile
G/T 15418953 synonymous_variant p.Ala437Ala
C/A 15418955 missense_variant p.Ala437Ser
C/T 15419033 upstream_gene_variant
A/T 15419038 upstream_gene_variant
G/A 15419092 splice_region_variant&intron_variant
C/T 15419097 splice_region_variant&intron_variant
G/A 15419126 missense_variant p.His412Tyr
A/T 15419142 synonymous_variant p.Gly406Gly
T/C 15419148 synonymous_variant p.Lys404Lys
T/C 15419172 synonymous_variant p.Glu396Glu
C/A 15419293 upstream_gene_variant
A/G 15419326 upstream_gene_variant
C/A 15419337 upstream_gene_variant
G/T 15419432 upstream_gene_variant
G/T 15419699 upstream_gene_variant
T/C 15419708 upstream_gene_variant
G/A 15419714 upstream_gene_variant
G/A 15419727 upstream_gene_variant
A/G 15419738 splice_donor_variant&intron_variant
A/C 15419741 splice_region_variant&synonymous_variant p.Leu325Leu
G/A 15419750 synonymous_variant p.Ala322Ala
G/T 15419837 missense_variant p.Ser293Arg
C/T 15419838 missense_variant p.Ser293Asn
C/T 15419904 upstream_gene_variant
G/T 15419922 upstream_gene_variant
T/C 15419959 upstream_gene_variant
G/A 15420016 synonymous_variant p.Ile264Ile
T/G 15420034 synonymous_variant p.Ala258Ala
T/A 15420126 stop_gained&splice_region_variant p.Arg228*
A/G 15420136 splice_region_variant&intron_variant
T/A 15420152 upstream_gene_variant
A/C 15420153 upstream_gene_variant
T/A 15420327 upstream_gene_variant
G/A 15420332 upstream_gene_variant
G/A 15420398 upstream_gene_variant
C/T 15420435 upstream_gene_variant
T/A 15420514 upstream_gene_variant
A/G 15420560 upstream_gene_variant
G/A 15420794 upstream_gene_variant
G/A 15421568 upstream_gene_variant
T/A 15421630 upstream_gene_variant
G/T 15421715 upstream_gene_variant
G/A 15421725 upstream_gene_variant
A/G 15421744 upstream_gene_variant
T/A 15421746 upstream_gene_variant
T/A 15421847 upstream_gene_variant
T/A 15421905 upstream_gene_variant
C/T 15421916 upstream_gene_variant
C/T 15421924 upstream_gene_variant
A/C 15421968 upstream_gene_variant
G/A 15421970 upstream_gene_variant
T/C 15422023 upstream_gene_variant
G/C 15422035 upstream_gene_variant
T/C 15422051 upstream_gene_variant
G/C 15422119 upstream_gene_variant
T/C 15422135 upstream_gene_variant
A/G 15422294 upstream_gene_variant
A/T 15422306 upstream_gene_variant
G/A 15422317 upstream_gene_variant
T/C 15422318 upstream_gene_variant
A/C 15422331 upstream_gene_variant
T/A 15422344 upstream_gene_variant
T/A 15422382 upstream_gene_variant
C/T 15422386 upstream_gene_variant
T/G 15422389 upstream_gene_variant
C/T 15422511 synonymous_variant p.Glu200Glu
A/T 15422533 missense_variant p.Met193Lys
C/A 15422644 missense_variant p.Gly156Val
A/T 15422749 missense_variant p.Val121Asp
C/T 15422750 missense_variant p.Val121Ile
T/C 15422991 synonymous_variant p.Lys40Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01277.1
MGLGLFKALFCCSKVRQIEIEESWESSPEHRSKEDSGKRKAVVGEFGLEKKRSTPQTGAILGKPYVKIEQMYEMKKELGSGQWGVTYLCVEKTTQREYACKSIAKTKLVSAQEIEDVRREVMILQHLSGQPNIVEFRGAFEDRHSVHLVMELCSGGELFDRIIAKGNYSEREAATVTRQIVNVVHVCHFMGVMHRDLKPENFLLATNTDDAAVKATDFGLSIFIEEGRVYKEIVGSAYYVAPEVLRRSYGKEIDVWSAGIILYILLSGVPPFWAETEKGIFDAILEGKLDLESAPWPSISTAAKDLIRKMLKHDPRKRITAAEALEHPWMKEGGEASDKPIDNAVLTRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYEELKSGLTKLGSKLSEHEIKQLMEAADVDKSGTIDYQEFITATINRHKLEKEENLYKAFQYFDKDNSGYITREELRQALTEYQMGDEATIDEVIDDVDTDNDGKINYQEFVAMMRKGILDIDEKEKPR*


CDS Sequence:
>Vu_01277.1
ATGGGGTTGGGGTTGTTCAAGGCGTTGTTTTGCTGTAGCAAGGTCCGTCAAATTGAAATCGAGGAGTCATGGGAGTCGTCTCCGGAGCATAGGTCGAAAGAAGATAGTGGAAAAAGAAAAGCAGTAGTTGGTGAATTTGGTCTTGAGAAGAAGAGGAGCACGCCACAAACGGGAGCTATTCTGGGAAAACCGTACGTAAAGATAGAGCAAATGTACGAGATGAAGAAAGAGCTGGGAAGCGGGCAGTGGGGTGTGACTTATCTGTGCGTGGAGAAGACGACGCAGAGAGAGTACGCTTGCAAGTCGATTGCGAAGACGAAGCTGGTGAGTGCGCAGGAGATTGAGGACGTGAGAAGAGAGGTTATGATTCTGCAGCATCTGTCCGGGCAACCCAACATCGTGGAGTTCAGAGGGGCTTTCGAAGACAGACACAGCGTGCATCTGGTGATGGAGCTGTGCAGTGGAGGCGAACTCTTCGACCGCATCATTGCCAAAGGGAACTACTCAGAGCGTGAGGCGGCGACGGTGACGAGGCAGATCGTGAACGTCGTTCATGTCTGCCATTTCATGGGCGTCATGCATCGAGACCTCAAGCCGGAGAACTTCTTGTTGGCCACCAACACAGACGATGCTGCCGTCAAAGCCACTGATTTTGGACTCTCCATTTTCATCGAGGAAGGAAGAGTGTATAAGGAGATTGTTGGAAGTGCATACTATGTGGCTCCGGAGGTGTTAAGGAGGAGTTATGGAAAAGAAATAGATGTGTGGAGTGCAGGAATAATTTTATACATCCTTCTAAGTGGAGTGCCTCCATTTTGGGCTGAAACGGAGAAGGGAATATTTGATGCAATTTTGGAAGGCAAGCTTGATCTGGAGAGCGCACCATGGCCTTCTATTTCAACTGCTGCAAAGGATCTGATCAGAAAAATGTTGAAACATGACCCTAGGAAACGCATTACAGCTGCCGAAGCCCTTGAACACCCGTGGATGAAGGAGGGCGGTGAAGCGTCTGACAAACCTATAGACAATGCTGTTTTAACTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTCTAAAGGTTATAGCAGAAAACCTTTCAGAGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGACACTGATCGCAGTGGCACAATCACATACGAAGAACTCAAATCTGGATTGACCAAATTGGGTTCCAAGCTTAGTGAACATGAAATAAAGCAGCTAATGGAAGCTGCTGATGTTGACAAGAGTGGAACTATTGACTATCAAGAATTCATCACTGCCACTATAAACCGGCATAAACTGGAGAAGGAAGAGAATCTGTACAAGGCTTTTCAATACTTTGACAAGGACAACAGTGGATATATAACAAGAGAAGAGCTTAGACAAGCATTGACTGAATATCAGATGGGAGATGAGGCAACTATAGATGAAGTGATCGATGATGTGGATACTGATAACGATGGGAAAATAAATTACCAGGAGTTTGTGGCAATGATGAGAAAGGGGATTCTGGATATTGATGAGAAGGAGAAACCACGATAA


Promoter Sequence:
>Vu_01277::LG1:15423171-15425171(-)
ATAAAAAAAATTACTTTTGCATTTAACACAAATTTGTTTCAAAGTATTAATTAATTTTATTTTTCATATTCTCATTATTCACTTAACATTTATGGGAGAGATATAATTAAATTATAATCTTTCTTTTTCTTTTAATCAACATGAAATCTTCATGACTTCCTCAAACATACGAGAAATCGAGAAAAATCTATTAACAAATGATATAATAAGTCCACATCTGTACTATGATAAACTCTGATAAAATATTAATAAAGTGAAATTAAATGTAAGAAAATTTACATTGAGAGATAACAACCATATGAAAAGTTAATTTTAATTTATTCACCTTATGTCACACTTGCTTTGTATTACGTGTAGTGTTTTTAAAATTAGAAAAAGCTATATAAAGTTATATTTATATGATAGTATAGACATCGAATGTAAATACTTGCAATTTCTATATTATAATTTATAGTTATAATGTTCTCCCTCTTACTTATTGCTATTATTAATAAAGTAGTATTTAATGTATTGGTTATTGAATTTATTATGAAGGTTTATTACATGAAAAACAACAAACACATTTTATAGTTAATGTCAGCGTTGTGCTTCTAATTTATTCAAAGATTTGGGCCCATTGATATTGATAAATTAAATAGAGGGATTATTAAAATTATATGTATTTTATATGAATTTTTCTACCTGTAAATAGTTTAATGAAATTTTGTATGTACTTATATGCCATTTATTGATGTGAGGTGATGCGAAAGACTGATGTTAAAGTTTCACTCAAGGAAAAATAGACGTTAGGTATATGAAATGTGATGTTTTATTCACTTGTATGATGATAGTTTAGACTTGTATTTTACACATTTAACCTCTAAGAATAAATGTCTTAAAAGAGGATTAATTTGGACGTGGAGATAATTATAACAAATATTTTTAAAATTGAAATAATATCAGTTTAAAATTTGAATAGATTTGAAGAATTTTTTTTTTATTAGTAAGAGAAAAAATATTAAGAGTTCTCATCAATTCATAAATAATAATACATACACTAACCTTTTGTAAGCTTGGCCCAAAAACCAAAATGCCAAATCTTGTTTATTGTAAGTTCTACAGTTGACATCCTGGTCCAGATTCAATGAAAATTTCATCGCATATTGCCCTCTCGCAAGACATCAATCATACTATACAATCTCTTCTCATCCTTTGCTTCAATCTGCATAGATGAAGTAACCCAATAAAGGATCGTATACAGAGAATGGTTAAAGCAAGAACAACTGTTGGTAGTTAAAATTGTTTTAACAGACGAAGGGCATTCCCAATCATAGGTTAAGATGGAATTAACACCTCCAGACATCGTAAGTTTGTTCTAAGAAACATTAATGTCGAATTCCTCACTGTACAAGTTACTTGATCTTCAACATCAGTCCAAGACAGAAGTTTGATGCAAGAGTGATGATTTTAGCAACCACTGCAAAATACAGATTAACAGTTGACCCTTCTCTAGCCCACAAGTACCCTATAGATTACAACACAAACGATATAATCACATTCAACTTCAAATGCAACAATCAGTAGTGAATCGATATAGGAACAGTGCAGTTTAAAAACAGTTAAACAATCTAGAGTTTTTAAACAATTTAGGTTTTAATGCAGCTCATTTTAGAGGGTTAGTAGTTTCTTTTTTGTATATCCTTTATACCAGATGAAGCAATATGGTCAGACAGAAGCTTTGTCCTGAGCATGAAATGGAAAGAGTCGTGAACAAGAACCCATACATAGATGCGAAGCGTTCGTGGTCTTTCTCCTCCGATCGTACCAATACCAAGAGAAGAGTAATGGAATCGGTTCTAATTTAAAACCTACAAGCTTACAGATGGTTATATTCTTGTTCTTCCCACTAAGCCAAGGTGAGAAGAAAAGCACCAAAAACATTGGCAATTGTAATCAACCCCATTGAAACGAATAGTTAATTGGGTTATATAAATAGGGTTATTATCAGTTCCAGGAGCTCT


Gene Sequence:
>Vu_01277(-)
GATATAAAAGCAAAGCAAAACTATCACCACGTACGTACCCAGAAAGATCAAGAAAAAAAAAATGGGGTTGGGGTTGTTCAAGGCGTTGTTTTGCTGTAGCAAGGTCCGTCAAATTGAAATCGAGGAGTCATGGGAGTCGTCTCCGGAGCATAGGTCGAAAGAAGATAGTGGAAAAAGAAAAGCAGTAGTTGGTGAATTTGGTCTTGAGAAGAAGAGGAGCACGCCACAAACGGGAGCTATTCTGGGAAAACCGTACGTAAAGATAGAGCAAATGTACGAGATGAAGAAAGAGCTGGGAAGCGGGCAGTGGGGTGTGACTTATCTGTGCGTGGAGAAGACGACGCAGAGAGAGTACGCTTGCAAGTCGATTGCGAAGACGAAGCTGGTGAGTGCGCAGGAGATTGAGGACGTGAGAAGAGAGGTTATGATTCTGCAGCATCTGTCCGGGCAACCCAACATCGTGGAGTTCAGAGGGGCTTTCGAAGACAGACACAGCGTGCATCTGGTGATGGAGCTGTGCAGTGGAGGCGAACTCTTCGACCGCATCATTGCCAAAGGGAACTACTCAGAGCGTGAGGCGGCGACGGTGACGAGGCAGATCGTGAACGTCGTTCATGTCTGCCATTTCATGGGCGTCATGCATCGAGACCTCAAGCCGGAGAACTTCTTGTTGGCCACCAACACAGACGATGCTGCCGTCAAAGCCACTGATTTTGGACTCTCCATTTTCATCGAGGAAGGTCACTCTTTCCTTCATTTCCATCTTTTTATCTTATTAAATGAATGTAGAGTATCAAACAAACATCAAGAACCTCTTTTCTGACAAAATGAAAATCACCTTATTTTTTAAAGGACAAAGTCGTCATAACACATATTTTTTTATAACATTTTTACACAGAATGTGATTTTGGATTTACAGTATGAGTATACTTTATGTTAAAATATCTTAAAAAATCTATGTTAATTAAAAAAAAATTATTTTTATTTGATAAAAATGAGATTTAGGGACAAAAAAGATTTATTATTTAAAGAAAATATATTTTGATAACATACATATTAAATTTTTTATTAATTCTTTATTTATTATTATTTTAATTCAATAAAAAACTAATAAAAAAATAACATGTTTATTTTGTCAAAATTTTATCAAAATGTTCTTATGTATTAATATAGAGTAATAATAAAGTAACAGTTTTACGTTCATTTCACATATAATATAATACGGGTAAAATGATTATAAAAAAAATGAATTTTTGTATTTTTTTTAAAAAAGGAAAATAAAAAGTAAAAGATTTATGTTTGTTAAAAGTATATTTTTCATTAAAATATCATTCCCATTCTTTGGTTTGGTATTGGGTATGAGAGTGGGCCTGAAGTGAGAGAATAGAATAAGGGCATAAAAGATCAAACAACATACATTAGCTAAGTTAAAAAGACACAAACTAACGTGAAACAACATATTATGAATAAATAAAACCTTTCTCCCTGTCTCTTGTCTCTCTCTAACAAAGCGTACTGCGTACTGATGCAAAAAAGTGAGGAATGGTGCTTTATGTTGTGTGAGTGAGAAGTGAGGACCATCTCATCCCATACCCGATATCCACATTCCAGCCCCAAAGCAAAAGCAAAGGATAAATCAAGAGTAGTAGCACTGAGTTTCTTCTGTACACAAGCTAGCTGCTTCTGTTTCCAACTCAGAAACTCAAAATCTCAGACATCAATCAGAATCTCTCCACAAACAAACGTTATTTATCCACATGGGACACTGTTTCAGCAAACCCCGCAGCAACGAAATAGCAATCAACTATGATTCACCGCCCCATCATCGTTATCAGCCTCGTGCACACCCACCACCACGAAGAACCCAACAACAACACCAAAACCAACCTCATCTTCGACCTCGTTATCCCTACTCTGCTCCAAACTCCGACCCTTCTCTTTCCATCGCTCCTTCATCATCATTCTCTGATCAGTCACGAATTCTGGATAAACCGTACTTCGACATCAGCGCCCTTTACGTTCTGGAGAGGGAACTGGGGAGGGGTCAATTCGGGATCACTCGTCTTTGCACCGAGAAGACCACCGGAAGGAAGTATGCCTGCAAGTCCATTCCAAAGCGGAGGCTAACCAAAAAGAAGCAAATTGAAGATGTCAAGAGGGAAATTCTGATCCTGCAGCACCTCTCTGGTCAACCCAACATCGTTGAGTTCAAGGGTGCTTACGAGGATTGGCAGAATGTGCATTTGGTGATGGAGTTGTGTTTGGGTGGCGAGCTTTTCGATCGCATCACTGCAAAGGGTAGTTACTCCGAGAGTGAAGCTGCTTCCATATTCAGACAAATCGTGAATGTGGTTCATGCATGTCACTTTATGGGAGTCATGCATAGAGACCTTAAGCCAGAAAATTTCTTGCTTGCTAATAAGGATCCCAAGGCACCGTTGAAAGCCATCGATTTTGGATTGTCCGTCTTCATTGAAGAAGGTCATGCGTCACCCATTTCTCTTCCATTCATTAATTCCTTTACTTTCTTTATTTACATTTACCACATCACATCCTTCTCTGCAGCATTCAACCTCTGATTGCTCCTTCTCCTTTTTCTTTTTTTCTTTACTAAAGAGATTCCAAACGTTGCCGTGTGAGTTTGTCAGTATAAATGAAAAAGCAATAATTGCCGTAATACAGTAGGTAGAGGAAGAAGACCGAGTCAATTGCTATTCTGGACACATGGAGTCAACCGAGTAAACGATCTCCAATATGATAATGACAAGTCAACCGAGTAAACGGTTTGCCATTATAAAAAGGAGCAACAGAAAAAAAAAAACAGACACAAGAGGTCATTCAGCCAGTAAAAATGATATTCTGTTTTTAAAAGCATGATGGGTAGTTACTTTCAAAAAGAAAAATAAACGATGGGTATTAAAAACTGCTTTCACCAACATGGTGGCAAAAAAATTGGCTGATATGTTTGACTACAGTTACATTTTAAAATTTGCGTTTTTGTATGTATTAATTGGACTGTACTAAACAATATGAAATTGTACAGGAAGAGTGTATAAGGAGATTGTTGGAAGTGCATACTATGTGGCTCCGGAGGTGTTAAGGAGGAGTTATGGAAAAGAAATAGATGTGTGGAGTGCAGGAATAATTTTATACATCCTTCTAAGTGGAGTGCCTCCATTTTGGGCTGGTAAGTATATATAATCTGTGACTCTATCTGAAAGGTACATTGTTTTAGTATTGTTCATTGCTCTGGTAACATTATCTGTGGGACAATTTTAGAAACGGAGAAGGGAATATTTGATGCAATTTTGGAAGGCAAGCTTGATCTGGAGAGCGCACCATGGCCTTCTATTTCAACTGCTGCAAAGGATCTGATCAGAAAAATGTTGAAACATGACCCTAGGAAACGCATTACAGCTGCCGAAGCCCTTGGTAAGTATGTCACTGCTGCATTTTACGTTTTAGCCACACGCATTCTGATGGTTTTTCAAGTATGTATTCCATCCAAACTCAATACAAAAGCATCGACATTTCTCATCTGAACCAGAACACCCGTGGATGAAGGAGGGCGGTGAAGCGTCTGACAAACCTATAGACAATGCTGTTTTAACTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTCTAAAGGTACCTCAAATTTTTCAGTAGTGCATTAAATTTGAATCAAATATATAAATACAAATGCCTTGCAAAAATGTAACTACTGTTGAATGTGGTCAGTTGAGTGAGTGGAAGTGGAGAGTTAATTAAAAACTTCAGAATAAAAATCTGTTACACTTGCTTGACATAACAAAAATGGTATGAGAAGGTAGAAAATAGAAGTGAATATTGTTCTAGTAATAGAATTTGCTTGTTTTTTATATGAAAGGTTATAGCAGAAAACCTTTCAGAGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGACACTGATCGCAGTGGCACAATCACATACGAAGAACTCAAATCTGGATTGACCAAATTGGGTTCCAAGCTTAGTGAACATGAAATAAAGCAGCTAATGGAAGCTGTGAGTTCAGTCTCGTCCGAATTAATCTTTACAAAATACTTTTTCTTATACACCAAGATATTATAAGCAATGATACATATAATTTTTCCATCTCAGGCTGATGTTGACAAGAGTGGAACTATTGACTATCAAGAATTCATCACTGCCACTATAAACCGGCATAAACTGGAGAAGGAAGAGAATCTGTACAAGGCTTTTCAATACTTTGACAAGGACAACAGTGGGTCAGTACGAAGTTCATTAGTTTGATATCTGTTTAACTTTAGTACATTAGTAGTGTATTTGAATTGTGTATTTTCAATGGTTTTTGCTGAGTTTGCTCAGATATATAACAAGAGAAGAGCTTAGACAAGCATTGACTGAATATCAGATGGGAGATGAGGCAACTATAGATGAAGTGATCGATGATGTGGATACTGATAACGTATGATGTTCTTACATAGGTTATGTTAAAAGGTTGTGTTATCATGATGTAATGGTATGGACTAATGGTTGAGGTTTCCATTTGCAGGATGGGAAAATAAATTACCAGGAGTTTGTGGCAATGATGAGAAAGGGGATTCTGGATATTGATGAGAAGGAGAAACCACGATAACTGTTTTGTGTTGTGCTGTGTGCCATCAAAACAAACCGGTTTCTGGATTTTTCTTGCTGTTTGCTGCTTGCTGCTGATGATTGAATCACCTTTGAATGTGTGTATTTTCTTCATGGCATTCCCACTCTATGCCAAACTTTGTAAAGCTTCTATTGAATAAACTGCAATATGTGCAAAATAAATAAAACTATAATCCAAAGGCGTTCCTGCT