Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01172 LG1 14525028 14528806 WRKY transcription factor 1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, salicylic acid mediated signaling pathway, salicylic acid mediated signaling pathway, salicylic acid mediated signaling pathway, positive regulation of transcription, DNA-templated, response to salicylic acid
Cellular Component   located in   nucleus, nucleus, mitochondrion, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, zinc ion binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09159 Environmental adaptation   C 04626 Plant-pathogen interaction [PATH:ko04626]
SNP Position Effect Amino acid change
C/T 14525126 3_prime_UTR_variant
G/A 14525312 stop_gained p.Gln496*
T/A 14525479 missense_variant p.Asp440Val
T/C 14525636 missense_variant p.Ser388Gly
G/C 14525759 missense_variant p.Leu347Val
T/A 14525760 missense_variant p.Glu346Asp
T/A 14525761 missense_variant p.Glu346Val
C/A 14525817 missense_variant p.Arg327Ser
C/T 14525928 downstream_gene_variant
A/G,* 14525967 downstream_gene_variant
A/G 14525971 downstream_gene_variant
A/T 14525981 downstream_gene_variant
T/A 14525992 downstream_gene_variant
G/A,* 14526047 downstream_gene_variant
C/T 14526076 downstream_gene_variant
A/G 14526174 downstream_gene_variant
A/T 14526184 downstream_gene_variant
T/C 14526220 downstream_gene_variant
G/T 14526870 missense_variant p.Ser226Tyr
C/A 14527011 upstream_gene_variant
T/G 14527229 synonymous_variant p.Arg134Arg
T/C 14527487 missense_variant p.Ile48Val
G/T 14527525 missense_variant p.Thr35Asn
G/A 14527663 5_prime_UTR_variant
T/C 14527700 5_prime_UTR_variant
C/T 14527813 upstream_gene_variant
C/A 14527819 upstream_gene_variant
G/T 14527834 upstream_gene_variant
T/A 14527863 upstream_gene_variant
G/A 14527907 upstream_gene_variant
G/T 14527921 upstream_gene_variant
T/C 14527934 upstream_gene_variant
T/G 14527960 upstream_gene_variant
C/A 14528029 upstream_gene_variant
A/G 14528107 upstream_gene_variant
C/G 14528128 upstream_gene_variant
C/T,* 14528187 upstream_gene_variant
C/A 14528197 upstream_gene_variant
A/C 14528213 upstream_gene_variant
C/A 14528221 upstream_gene_variant
C/A 14528262 upstream_gene_variant
A/G 14528275 upstream_gene_variant
C/T 14528373 upstream_gene_variant
G/T 14528397 upstream_gene_variant
A/T 14528547 upstream_gene_variant
G/A 14528659 5_prime_UTR_variant
T/A 14528663 5_prime_UTR_variant
T/A 14528667 5_prime_UTR_variant
A/G 14528682 5_prime_UTR_variant
C/A 14528745 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01172.1
MVSSDKSEDQNTPSDKLQHRASPDSDVTLSQGHDTKNDLSKPEGATSIPSAVAKNEEGKDSDATACALESDQEGSTCSLPPEKHLQSPDTLLNELPPLQSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSNNGNITDCVSIGQHNHPRPQLNSTVSVECVLPVVEQAARKPLLANVKDKTSVEQGCTSQQIKPLQSFPTVKVSPVNELKAAHLQLSKAKNQIHDNEDPESKRLKKDNSNVDATGITMSTRESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHELPPGRTVTHNAATNTHTTTMNGKAGTKSEDTAVNRGEQTGLSSASKLTEQLNGKSTTKSKVGDIVEFGVSSLSNEGPKIKLSEQQQKDNSGTKDDSVSNDVICHSSSGVPCRSNEQLKCEVKPLSEGTKDCFNKVAIHDTSSTESEFNKQSAADAEPVRS*


CDS Sequence:
>Vu_01172.1
ATGGTTTCTTCAGACAAAAGTGAAGATCAAAATACCCCTTCTGATAAATTGCAGCATAGAGCGAGTCCTGATAGTGATGTTACATTGTCTCAAGGTCATGATACTAAAAATGATCTGTCCAAACCAGAGGGAGCCACAAGTATTCCTTCTGCTGTAGCTAAAAATGAAGAGGGGAAGGACTCCGATGCTACTGCCTGTGCCCTGGAATCAGATCAAGAAGGAAGCACGTGCTCATTACCACCTGAGAAACATTTGCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCAATCCAGTCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCTAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACATGTCAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACATATCCAAACTGCCAGGCAAAAAAGCAATTGCAGCAGTCTAATAATGGGAACATCACAGATTGTGTTTCTATCGGACAGCATAATCATCCTAGGCCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTTTACCGGTTGTTGAACAAGCAGCACGCAAACCCTTGTTAGCCAATGTGAAAGACAAAACATCCGTTGAGCAAGGATGCACGTCTCAACAAATCAAGCCTTTACAGTCCTTTCCGACTGTAAAAGTGTCCCCAGTTAATGAGTTGAAAGCTGCACATTTACAATTGTCTAAGGCAAAGAATCAGATTCATGACAACGAAGATCCTGAGTCAAAGCGACTGAAGAAAGACAATAGTAATGTTGATGCCACTGGAATTACCATGTCAACTCGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCAAGAAGTTATTATCGATGCTCAAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCATGAACTCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAACGACCATGAATGGCAAGGCAGGAACCAAATCTGAAGATACTGCTGTTAATAGAGGGGAACAAACTGGCTTGAGCTCAGCAAGCAAATTAACAGAGCAACTAAATGGCAAGTCAACTACTAAGTCAAAGGTCGGTGATATTGTTGAGTTTGGCGTGAGCAGTCTTTCTAATGAGGGTCCTAAAATTAAATTAAGTGAGCAACAGCAAAAAGATAACTCAGGTACTAAAGACGATTCTGTCAGCAATGATGTTATATGCCATTCTAGTTCTGGAGTTCCGTGTAGATCCAATGAACAGCTGAAATGTGAGGTAAAACCTTTATCAGAAGGAACTAAGGATTGCTTTAACAAGGTTGCCATTCATGATACCTCCAGTACAGAAAGCGAATTTAATAAGCAATCAGCAGCTGATGCAGAACCGGTCCGAAGCTAA


Promoter Sequence:
>Vu_01172::LG1:14528806-14530806(-)
ACTCTTTTATTGTTGTTACCAGAATTAAAGAAGGAGTAACTTCATAAATTTTTATTTTAAAAATGAAACTAACATAATCAAACATTATTATCTAACTTCTATAATTAGTACGGATAATTAATGGGGAAGGATACTTAATAAAATTATCCCAATTTTATGAATAAAATTTAAACTTATAATATGAAAATTATTAAAAAAATTCTTTACAAGAAAATATCAACTACAAAAAAAAAAGGAAATATAATTATATAAAATTTTAGATAAAAGATTACACAGGAATGACTAAAAACAAAAAAGAGTTAACAAAAACCATAAACAGTAGAGTTTTTCTTCTTGTACTCCCGTAATTTCTAATTGCACTCTCTCATGATTTTTCAATTCCATTTTCGAATAATCTTTCTGAAATTTATGAAACAATATTTCAGAACAAAATTTCTAGAACATCATTTTTAAAATAAGTTTTCATGAACAATAAAATGTATTATGGAATGATTTTTTCAAAATAAAATTTTCAGATCAAACTTATATATTATACATTTTAAAACGAGTTTTTAAGAATATATGAAATATATGAATTGTATTCCAAAAAAATATTGTTGAATTAAATTTTCAAAACAATTTTTTTTAGAACATAAATAATAATTTTTGAGATGAGTTTTTTTTAATGAACTCTCTTTCGACAAATATTGTAGTGGAGAATGTAGATCCAACCAGCATAAATAGTGACATAAGGTAGTGAGAAGGATATTTTAGTCTTTTTCTTTATTTTAAGATACAATTAGTAGTAATGAAAAAAGAGAGTCTTAAAAGTGTTTTAGACTCTTACTATTTACACTTTTTCTCTAAATGCACCCTATTTTAATTCTTTCACATGACATAATTATTCTTATATTTCGTTTCTTGTTTCATCTGTTTAGAAAGTTCTTTTATGAGATGTTAAAAATATAAGATATGTTCTGAAAAGTCCTTTTCCAAATGCTAAGAACATAAAATAGTTTATCAAAAGTACATTTTTCAATGTAAAAAGAGCTATGTATATAAGGAGGTAATTTTTGAAGCATTCATTTTTTTAAATATTCTTTTTATCGTCACATTTTATAAAATAATTTTTTATATGTAAAGAAAATAAAATATACACTTAATCCACGAAAATTTTAAAAAAATTATTTAGAAAGTACATCATATAGAAAATCCTTAGGTTTCAGAATACATTGTTTTTAATTTCCAGAACACGTTTTTATTTACTTAACATTTTAGAGAATAGTTTTCCGAAGATAAAACAATGTTTCAGAAAATATTTTTCAAGAAAGTAATACTTCTTTAAACACTTTTATTTCTTTTCACATTTTGAAATATACCTTTTCAAAATATATTTCATCTTGTTAACATTATGAAACTAAACATAAAACAAAATAGAAAAAATAAGAATACCTTAAAATAAATTTAAATATATTTTTAACTCTTAAACTTTGATATAAAATTAAAATTTATTTATTTAAAACTTTAACGATGTCTAAATTTTGAAACAAATTTTAAAAATTAATAGATATAATCTTTTTAATTTAATTTATCAAACTTTTTTATATGTTCTCTATTTCATATTAATATTTAAACTATTTATATGATTTAACATATTTTAATGTCAATAGAAAAATACATTAAATATATTAAAAATATTTAACATTATTGAGTGAAAATAATTGTATATATTATTTTTTAAATTTAAAAATCAAAATACATCCAAATTTCTTATCCAAATCGAAAGAATTAAAACAATCTAACTTTTCTAAAATAAAAGAAAAGGTGGTGCATTTAATAAAACAGGCCCAATTGGTGAATGTAGCCCAGAAGAGAGTGTTGTGGTGCGGTTTGGGAGAGAGAAGGAGAACAAGAACCGTCGATTGAAGACTTGACAAATGAAATGAAAGCACAGAAAAGCATATTCTATGTGTGTGTATGTCAGCGTGTCACTTTAAAATTAATAACAGCAGAGAGAGAGA


Gene Sequence:
>Vu_01172(-)
GAGTGGACTTTTGTTACCTTTTGCCTTGTTTTTTGGGTCAATTAAATAAGGATGTTACATTGGACTCACTCCCATTGCATTGCTTCCTTCCACCCAAACCCACAACATCAACAACAACGTTTTCTTCTGCTCTGCAACAAATAAACACTTCTTTACTCAACTCAACTCTCTCTTCTCCAATTTCGAGATTCTTCTTCTTTTCCGGGTAAGTCATCTCTTCCCACGTGCAATCTTTCTCTTTATAGTCCCCACAACCCAATTTCTCCCTTTTCTATTCACCCCCTTTTTCATCTCAAGCTACTAAAACCGATGTGGGACTTTTTTCTGGGTTAAGGGATGTTTCCAGAGAAGCTAGAATACCCAGTTTTTTTTGGGACTCCAGGAAATGGATTAATCCTCGCTCTGCTCTCTTTCCACTGATTTCCTTCTCTGGGTTAATTTCAGAAACGGAATAAAGAATAAGTTATCTCTAAATGTTTTGTTTGCAATTGGATTGTTTAACTGATAATTCAGTAGAGTATGGTATGATCTTGAAGTAGGTCCTGGGAATTAAATTTTTGCATGAGATTCGAGCTTCTGTGAATTGGAAATTATTATGGCTTTAATTATGCGTGTGTGTGTTTGTATGTGCATCTATGGCGTTAGGACTCCGATTTGGAATATTTAGATATAATATTTGGTTTATCATGGCTGAATGAATGATTTCGTATGTTTAAAGTGAGTTTCATATTGCTGCTGCTTCTAATAAAAGTTGGGTTTTTTAGCATCAGCTGTTTAGCAAGTAAAAGTGGAAAGAGGAAGTTTTTATTAGAAAAAGAAATTGTTAATTATTACCTGGGAAAAACAATAAGTGACGGATTTTTTTTTTTTCCAACGAAAACTTTCCGCAATTTTTGCCTCAGAACAGGGTTGACATTAACATAACTGGTAAAAAGTTCAACAAAGGAACCTCGGATGAAACAGCAAATTTCCCGACCCACTGTTCATGCTGTAGCTGTTACTGATATTTCTGTCACATGGAACTGGAACCTAAGTTTGTATTTTTTCTTGTAGCTTTTCAAATGTGTCAGGTCTGAACAGCCACAAGCCCACATTGCTTAGCCATCATTCAAGACATTCATGGAAGCAGTTAGTGAAACTAGACCTATTTCCTTCTGATTTATAAGAAACAGGTTCACATGGTTTCTTCAGACAAAAGTGAAGATCAAAATACCCCTTCTGATAAATTGCAGCATAGAGCGAGTCCTGATAGTGATGTTACATTGTCTCAAGGTCATGATACTAAAAATGATCTGTCCAAACCAGAGGGAGCCACAAGTATTCCTTCTGCTGTAGCTAAAAATGAAGAGGGGAAGGACTCCGATGCTACTGCCTGTGCCCTGGAATCAGATCAAGAAGGAAGCACGTGCTCATTACCACCTGAGAAACATTTGCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCAATCCAGTCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCTAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACATGTCAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACATATCCAAACTGCCAGGCAAAAAAGCAATTGCAGCAGTCTAATAATGGGAACATCACAGATTGTGTTTCTATCGGACAGCATAATCATCCTAGGCCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTTTACCGGTTGTTGAACAAGCAGCACGCAAACCCTTGTTAGCCAATGTGAAAGGTGAGCGGTAAACATTGTTAGTACTTTAGTATATGCTTTCATAGAAAAGATCTTAATGCATTTTATTACATCATTCATGAAGACAAAACATCCGTTGAGCAAGGATGCACGTCTCAACAAATCAAGCCTTTACAGTCCTTTCCGACTGTAAAAGTGTCCCCAGTTAATGAGTTGAAAGCTGCACATTTACAATTGTCTAAGGCAAAGAATCAGATTCATGACAACGAAGATCCTGAGTCAAAGCGACTGTACGTTGTTATCACTATGTTTTAAAATGTGCTGATATGCATGCGTGACTAACCTTTAATGCCAAATTGGTATCATGCAGGAAGAAAGACAATAGTAATGTTGATGCCACTGGAATTACCATGTCAACTCGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCAAGGTACATGTTAAATTTTCATTTCAAATACAGTCGTATTTTCTGCTATTGTAAGGGTTAGAATGTGTCTTATATTGATCCACAGTATCTCATTTTGCCTTGGATGAGCTAGCCTGAAACCTTGTCGCCACCAATTAATTTCATTAGCTATAGAGTAATGATCTCTTTGAGATATTCTTTGCCTGCTTGAAAGCAACAGGAAGTGGTTATAGTATTTTCTTCTATATTATTTCCAAAGTATGTTCCACATGCACTTTTTGTAAGATTTTAATCTCTAGTCCACAGAACCAGTAGTCTCAATATCATGGTTTTAACCATGATATAGCAGTCCTAACCTGATTTTGAAATGCAAGCAAAACTCATGAATGTTTGAACATAGATGAACAATTTTATTACAAGTATCGTGTTTCTTAAGGATAAAAAGAAAGCAATTGAAATTGTATCAATACAGCTCCTGTTCTGAATTAGTATATTGGGAATAACAACTCTTTCAGTCCAACTGCATCCTCTTCTCTAGCTGGTTAAACTTGTCAAGTTACCTCTTCTCGTTCAGGTTGCACGGTTTTTAGGTGTTTATGTGCTCTCTCTATTCCTCTGTGCTCTGAGCTTTACATGGACACATCATTCACAAATGTTTTAATTTAATGTGATTGGATTTTCTCTCCACTGCAGAAGTTATTATCGATGCTCAAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCATGAACTCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAACGACCATGAATGGCAAGGCAGGAACCAAATCTGAAGATACTGCTGTTAATAGAGGGGAACAAACTGGCTTGAGCTCAGCAAGCAAATTAACAGAGCAACTAAATGGCAAGTCAACTACTAAGTCAAAGGTCGGTGATATTGTTGAGTTTGGCGTGAGCAGTCTTTCTAATGAGGGTCCTAAAATTAAATTAAGTGAGCAACAGCAAAAAGATAACTCAGGTACTAAAGACGATTCTGTCAGCAATGATGTTATATGCCATTCTAGTTCTGGAGTTCCGTGTAGATCCAATGAACAGCTGAAATGTGAGGTAAAACCTTTATCAGAAGGAACTAAGGATTGCTTTAACAAGGTTGCCATTCATGATACCTCCAGTACAGAAAGCGAATTTAATAAGCAATCAGCAGCTGATGCAGAACCGGTCCGAAGCTAAATTTGCAATATTTTTGAAGCTGCAGATGGTTACAGAAGAGTATAAATATTTGACTATGACATAGGCTTGACAGATATATTGTGGGATTATAATTCCTATCTCTACTCTAACCTTCACTTTACTCTTCTTCTAGCTCTCTCATTGTCTTTGGGCAGTTTGACTAAATATGCAAATTACAATTAATACTACATTGGATATCAAACTTGTATACCATTATTGTTGGAGTTAAATAAGATTTACATTTTCGTA