Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01145	LG1	14282745	14286945	PREDICTED: transcriptional regulator STERILE APETALA	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein catabolic process, megasporogenesis, flower development, protein catabolic process, megasporogenesis, positive regulation of organ growth, positive regulation of organ growth, megasporogenesis, protein catabolic process, megasporogenesis, positive regulation of organ growth
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding

SNP	Position	Effect
C/T	14283692	intron_variant
A/G	14283789	intron_variant
C/A	14283826	intron_variant
A/G	14283845	intron_variant
T/C	14284392	intron_variant
A/T	14284542	intron_variant
T/C	14284575	intron_variant
A/G	14284901	intron_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01145.1

MSSTTSSSSSSSSSSSTSAPYDVVAAPDIPGPSTRRTAQFEGPSSSRQRPMNEVLPEPFLEALANQVAIDAANYNGRLAAAQALAYFFRVCSTWREVSRSDLLWEHLTRRIWRRTFRVRDTWHTEYINWHRTATNFETGRLSFLTPRFDPSEHRRGLICRCLSLSDTRLACGFVDGTVRVFDLETYDHVSTYLSDHGHLFGPYSRSVSGIIITDSDITFARLDGDIYVDAINVHGQSQARRVVSGFVMNSGVLVGFAGTRRRWVGLFAGIAEGAFQVWNAESGERLFLGGSLTDPETVMGWHMLTELVDPVGRVRVTEDEFVVACTGLRLICFNAWNPEVLLRDEMSASGFVVSSMDVSSEAFVVVERGGVGTVWRVGTMELMSRFVLRSSWVRGLWGCMNLGYVVTYSPNPTPFLRVWNIEQEEGRLCVRVFLRAGEVNSMVGDDRHVAISSNNINLLDFGVQNP*

CDS Sequence:
>Vu_01145.1

Promoter Sequence:
>Vu_01145::LG1:14280745-14282745(+)

AAAAGTTATTTGTTAAAGATTCGGTATTTATTTAGTTCTTTCGTCATTATAAAGTTAGTATATAATAATAATAATATATTATTTACTATTAATATTATTATGTTTATTATTTTGTATTTGTATCTAACCTTTAAGTTTATATAAAATGGAAGCCGTAGAAACACTAATATTGAAGTTTCCTCTCAATTTTATATTTTGCAATATATCACAAGTTTAAATGCTCCATTAATGTAGAGACAGAAAGAGAAAGATAATGCTCCATTAATGCAGAGAGAGAAAGAGAAAGATTGTTAAGGATAGTGGGGAGGTGTAAGCTATTTTTGAAATAAAAGAAAATAGTGGAAAAGTGTAGAGTATTTTTGGAATAAAAGAAAATAGTGGAGAGGTGCAGAAGTACTTGGGGGTGGTGGAGGGAGCAACACCCCTCAATAAATCGAGTTGTAAAAGTCAACTCTTTATTAAGTGGTGGACCAGCCCAATCCAGCTTATTTTTGACAAATCAAAGACAGACCGAACTTATACAATCTAGGTTGGCTTGTTTTGTCACTCATAATTAATATTGTTTAAACAGTAATGAATTGAGATTTATTCTCTCCTTTTTTCTATCTCTAAATGATATTAATACCTATAAATTTATTATCCTTTAAACAATATTAACATTAATTTAACATAAAATCACATAATTTTTTTGTTCTAAAAAATATAGAGACCTTATTAAGAATAAAAAAATATAAATAAACATTAAATCATTACAACTAAAATTATACTAAATCTCATAGAAACATGCAAAAGTTTAATCCAATGTCATTCTAACACATGATTGAATTTCAATTATATCCTGTTAATCTACTTTAAACTCAGCCCAAGGCTAAAAAAGGACGACATTTTTTAGTTTAAGGAGTAAAAACGAGTCATCTCAACCAGTTTCTTCTACACTAAACAAAACAAATAAAAATAACCTATTTACATATACCAGTCATCAAACTTATCCAAACATCTCATTTAAAATAAATTTAGTTGCAGACAAAATATGACACGATAATTATTTTATGATTTAGAAAAGCAAAGTGTGGTTGTGTTATGAGCAGGCAAAAGAAAAAAAATAATAGTGCAACAGTTCAATTCAATTATTATTTAAATCTACATGGATAAAACAAAACCACCTCCATACTCTCTCTCACATGATAATTTAATCATAAAGTATTTGAAAATGAATTAATCTAGACAGTCGCCAAGTCTAGTTTAAAAACAATAAAATTGACCAATGAAAAAGTGTCCTTAAAAGTAATAAATAAATTAATTTCAGCAATCGAAAAATCCACTTCAGACAAAGTAGAAGAAGAGGAAAATACACACACACACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATATATATATATATATATATATATATAAATAGAGAAGAAGAGGTTTGAGGAGGACCACCACCACGTAGCATTTTAAGTATGTTTGAAAACACCTGAAGACAATGGTACCAGTGGAGTTGCCATAGCTGGATTGAAACCCAGCCCAAAGCAGTCCCTGCATTGCAGCACGGGAACATCTCCAGAAAACACAAATAAATATCATTAATGTAAAAAGGACCAGCTAGGGGAAGGAGATAGTGTAAATAATATATTACATTTATTTGGAATAATTGTTTTATTTATGGTAGAAAGAAAAGAAAAAAAAAAGAAAAAAAGAAAGAAAGAAAAAGGCAATAAGAAAGGGGTGTGTGTGTGTGAGAGAGAGGTTTGGTTTAAAAGTGAGATAAACGGAAGCTAAAGGGAAACACAGACACATATGATATAACCAAGAATTCCCAGACATCTCCTTTTGGGTCCCTCACTTTGTGTCCTTATCTTCTACCTTTTTGTCCTTGTTCCTTTCCGGTCTGGTCCTCCTTCCCCACTTTTATAGCCACCACCCACTTCACTCACTCA

Gene Sequence:

>Vu_01145(+)

ATGTCTTCTACTACTTCTTCTTCTTCCTCGTCATCATCGTCATCATCAACTTCAGCCCCATATGATGTTGTTGCTGCTCCTGATATCCCTGGCCCTAGTACGAGGAGAACCGCTCAATTTGAAGGCCCTTCCTCCTCTCGTCAACGTCCTATGAATGAGGTCTTGCCTGAGCCTTTTCTTGAAGCTTTGGCCAACCAAGTCGCCATTGATGCTGCCAACTACAATGGACGTCTTGCTGCTGCTCAGGCCCTTGCATATTTTTTTCGGGTATTTTGTTTTTTTGTTTTTTGTTTTACCTTTTTTCCTTCGTCTCCATCTTCATCTTCCTCTTTACCCCTCGTTTCGCTTTTGCTATAAAAAACATGCAATCATTGTTCACATTGCCTGTGTTTGCTTTGCTAAATCTGACCAAGGATTCTCAATTTGCTTAAAATGAAGATTTGTAGAATCTTCAGCATGTGTAACTGATAGCTTTTTCAGTTCCGTAACTGGACAAAATATTGGTCAAGTCAAACATGAATCTAGCATTGCAACCTGCAGACGCTGATTCTTTTTTATTTTCAATAAATATCAACACCATGGACTAACTTAATTATATTATATGTAATATTATTATTTTCATTATATCAACATCCCTCTTTTTATGTTTGTGCGGCAAACTTTTTTTCCTGTGTTTAAACTTTAGAGGCAAAGATTCAGCCGAATGGATAAGGAGACACGAGTGCCGATTTAGGTTTTAAGTTTTAGATGCTTCAAGCATCCGAGAAGAAACTGTTCCTTGAAAGCACTTTACGTGTGTCTTTTTCAAACCAAATATGTGTGTCCCTTTCAAAAAAGGGTGTATTTTTCTCCTTTGCAATGTTTGTTCTCTCTTCCCCTTCAAAAATGTCTAGTTTTGGACCTCCTTTTCACAAACCAATCAAAATGCTCACACTGCCTTCGATTTGCCGTTTCCCTTTCTCGGCATGAATCCTTTTTGACTGAGCTTTTTCCTGCTATCTAGGCTAGAAGATCCATTGCATGCCTTTTTTTATCTCAAAATATATAGATACCAGTTTTTTTTTTGTTTGAAAAGAAGTTGCTTTCTTAAACAATAACACAAGGATGGAAGCATAAATAGTTATTAATGTCTCATACCCAGCGTCCTTGCAAGTGTACCATTTCCATATATAGTCTGTTGCATATATATTTCGGAAGCACACCATTTCTTTTTCTTTATTTATTATCGAGATCAGTGAGAGAAGGTAACTGTCCACAGCATTAAAATAATTAATCTTTTTCTATATATATATATATATATATATATATATATATATATATATATATTTTGTGTTCAAAGAACAACCTTTCCCGGTGTGCTTCGAAGCAATGGAAAACTGGAATCAGATTTCGTGTACATTTATGCCTACCGTGAAAATAATAACAATTTTCCTTTACTTGCATTCATAAAACTAGAGAAGAGTTACTTTTATCAGTTAGAGTACCCTTCTACTCTATTGGAAACAACCAGTTGCATGATTTTTGGTTGCAGGATAAGCCTTGCACCTTCTCAAATCTCAATTAGGGTTTGAATTTTTTAATAATCGGTGATTAGTGGTTGGCTTAATATTTTATTTTATAATCTAAAAATGGGGTCAAAAAAGCAGCTATTGCATAACGCCAAAAGGCACATGGAGCCCTATTCTTGTCGTGACGACACTCCATTCCTTTTGTTTCTATCTGGGAAGTTCACACCTATTATAATTTTAGTTTTCTTTCCCAATAAATAAAATAGTATCATATGCTGTACTATATACGATATGATAATTACACACACAACAAAGTTGGGACTTGGGAGATGGGGCATGCATATTGTTTAGTTGTACTTATAAACTATGACCCCTATATATAAAGGTGGATCTATTTGGATAAATATATGTTCGAACGCCTGTTATATAAACAGAGTTTCATAATTAAAAACATATGAAGCTATGAAAGTTTGTTTTTTTCTTTTTAAAGTGTTTGCTGTGAACCCTTGTTTATGTGATGTTTTCTTTAACTGCTAAACAACAATAGTTTGTCCAAGAATTTGTTACTCAAGTTTTTTTACCTGGGTAGGATTGGACTGGTCTTTGTGGGCGTGAATAGAACCAGAGATTCGGTGTTTGGAACAAGACAGGCACTTGGGCATACCTTTCTTGGAAATGAAAGTGAAATGTTTGTGGGAAAGCACGCTTTTCATACCATGTTTACATTTTACACACACGCCTACACGAACAGGAACTTAGATATTGACTAGTTTCGTTATCTAGCCGTGTACCTGCAATGGACCACATAATAACACTGTATCTTCTTCTTTTCGCTTGCTACTTCCCCACTCTTTTTTCTCTCTAGGGCATGTTAATTAGCCTTACCCTTTTGAACTGCATGATATATATCTTATGGTGGTGGATGATGGCGAAGTATGTATGAAATGTAGGTGGCAGTGTATGTATGGATATTTCATCCCATACGTAAAGTATGCTATATGGCAGAGGCATGATTATCTAAGATTCTGAAGTATCTAACTGAAAATAAGTACACTGACATGATAATAATGAAAATTAAATGGGTGTAATGTTGTTAATTTGAAGCTGATAATGTGGTCTGTCTCTAGTCCCGAGTATCTGTTTATCTGCTACGCGATGTCATTGCTATGGTTTGCTTGGTTCCTGACGCGAATGATGGTTACCTCTCTGCTCCCTCCCAGCTAGCTGAGCTGAGTTTTAGCTTAGCTTAGCATAGCTACCTGCTTCTGCCATCTTCAATGTTTCTCTCTCCAGTCTTTCATCCATTGATACCTACTTATAGTTAACGAAAAGCAGGTAGATATTAGTGCACATTTCTTTTTGTTTTACGTGAGATTATGAAAATAGAATTTCTTGGCTTTCTATTTTTGTGGAAAAGAGTTCTAGGGACTTGCTCAATTTATCAATGCAGCTTTCGTGAAACGGAAAGCTATTTTAACTTAGAGCTAGGTTGGTTGGTTCATATGGAGTTGGGTTCACAACGGTGATGATGATTGAAAATTTGTGCATTGGCCATGCAGGTTTGTTCCACGTGGCGGGAGGTGTCGCGCTCGGATCTGCTGTGGGAGCACCTCACGAGGCGCATCTGGCGAAGGACGTTCCGAGTGAGGGACACGTGGCACACCGAGTACATCAACTGGCATCGGACGGCTACGAACTTCGAGACTGGAAGGCTGTCGTTTCTGACTCCGCGCTTTGATCCTTCGGAGCATCGCCGGGGCTTGATCTGCCGCTGCCTCTCCCTTTCCGACACCCGCCTCGCGTGCGGCTTCGTAGACGGCACCGTGCGGGTCTTCGACCTCGAAACCTACGACCACGTCAGCACCTACCTGTCCGACCACGGCCACCTCTTCGGGCCCTACTCGCGCTCTGTCTCGGGAATCATTATCACCGACTCCGACATCACCTTCGCCAGGCTGGACGGGGACATCTACGTGGACGCTATCAACGTGCATGGGCAGAGCCAAGCGCGGCGGGTCGTGTCGGGGTTCGTGATGAACAGCGGGGTCTTGGTCGGGTTCGCGGGAACGCGGCGGCGGTGGGTGGGTCTGTTCGCGGGGATAGCGGAAGGTGCGTTCCAGGTTTGGAACGCGGAGAGCGGGGAGCGCCTGTTCCTTGGGGGGTCGTTAACTGATCCGGAAACGGTTATGGGGTGGCACATGCTGACGGAGTTGGTTGACCCGGTGGGGCGGGTGCGCGTGACGGAGGATGAGTTCGTGGTGGCATGCACTGGTTTGAGGCTGATCTGTTTCAACGCGTGGAACCCGGAGGTTCTTCTGCGGGACGAGATGTCGGCGTCGGGGTTCGTGGTGAGTTCGATGGACGTGAGTTCGGAGGCGTTTGTGGTGGTGGAGCGTGGTGGGGTGGGAACGGTTTGGCGCGTGGGGACGATGGAGTTGATGAGCCGGTTTGTGTTGAGGAGTTCGTGGGTTCGTGGGTTGTGGGGTTGCATGAACCTTGGGTACGTGGTAACCTATTCTCCTAACCCTACGCCATTCTTGAGGGTTTGGAACATTGAGCAAGAAGAAGGACGGCTGTGTGTGAGAGTGTTCCTGCGAGCAGGAGAGGTGAATAGCATGGTGGGTGATGACAGACACGTGGCTATCTCTTCCAACAACATTAACCTATTGGATTTTGGTGTACAGAATCCTTAG