Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01113 LG1 14019633 14023800 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   pollen development, transmembrane transport, pollen exine formation, transmembrane transport, polyketide metabolic process, transmembrane transport, pollen exine formation, pollen exine formation, pollen development, sporopollenin biosynthetic process, pollen exine formation, sporopollenin biosynthetic process, pollen exine formation, pollen exine formation, pollen exine formation, pollen exine formation, pollen exine formation, pollen exine formation, pollen development, sporopollenin biosynthetic process, sporopollenin biosynthetic process, pollen maturation, pollen exine formation, pollen exine formation, sporopollenin biosynthetic process, polyketide metabolic process, pollen exine formation, sporopollenin biosynthetic process, transmembrane transport, transmembrane transport, pollen exine formation, pollen exine formation, pollen exine formation, transmembrane transport
Cellular Component   located in   plasma membrane, endoplasmic reticulum membrane, plasma membrane, endoplasmic reticulum membrane, endoplasmic reticulum membrane, nucleus, plasma membrane
Molecular Function   enables   ATPase-coupled transmembrane transporter activity, ATPase-coupled transmembrane transporter activity, ABC-type transporter activity, ATPase-coupled transmembrane transporter activity
SNP Position Effect Amino acid change
A/T 14019655 missense_variant p.Glu8Val
G/A 14021453 upstream_gene_variant
A/T 14021467 upstream_gene_variant
G/T 14021468 upstream_gene_variant
G/A,* 14021480 upstream_gene_variant
G/A,* 14021492 upstream_gene_variant
C/G,* 14021495 upstream_gene_variant
G/A 14021521 upstream_gene_variant
T/C,* 14021538 upstream_gene_variant
G/A,* 14021553 upstream_gene_variant
T/C 14021556 upstream_gene_variant
A/G 14021568 upstream_gene_variant
T/C 14021575 upstream_gene_variant
G/T 14021579 upstream_gene_variant
C/A 14021588 upstream_gene_variant
A/T 14021609 upstream_gene_variant
A/G 14021612 upstream_gene_variant
T/G 14021616 upstream_gene_variant
C/T 14021622 upstream_gene_variant
G/A 14021632 upstream_gene_variant
T/C 14021633 upstream_gene_variant
A/G 14021715 synonymous_variant p.Pro290Pro
G/A 14021794 missense_variant p.Asp317Asn
A/T 14021797 missense_variant p.Thr318Ser
T/C 14022021 upstream_gene_variant
G/C 14022047 synonymous_variant p.Leu375Leu
C/A 14022295 missense_variant p.Thr458Asn
T/C 14022396 splice_region_variant&intron_variant
C/T 14022484 synonymous_variant p.Val494Val
G/C 14022707 upstream_gene_variant
C/A 14022726 upstream_gene_variant
G/A 14022809 upstream_gene_variant
G/T 14022822 upstream_gene_variant
A/T 14022848 upstream_gene_variant
C/T 14022866 upstream_gene_variant
G/A 14022874 upstream_gene_variant
G/A 14022875 upstream_gene_variant
C/T 14022881 upstream_gene_variant
C/T 14022882 upstream_gene_variant
C/T 14022883 upstream_gene_variant
C/A,T 14022895 upstream_gene_variant
G/A 14022901 upstream_gene_variant
T/C 14022909 upstream_gene_variant
G/A 14022914 upstream_gene_variant
C/T 14022918 upstream_gene_variant
C/T 14022924 upstream_gene_variant
G/T 14022928 upstream_gene_variant
T/C 14022936 upstream_gene_variant
G/A 14022943 upstream_gene_variant
C/T 14022954 upstream_gene_variant
G/A 14022955 upstream_gene_variant
T/C,* 14023011 upstream_gene_variant
A/G,* 14023014 upstream_gene_variant
T/C 14023024 upstream_gene_variant
C/A 14023053 upstream_gene_variant
A/C 14023056 upstream_gene_variant
G/A 14023059 upstream_gene_variant
T/C 14023065 upstream_gene_variant
A/G 14023102 upstream_gene_variant
T/A 14023105 upstream_gene_variant
T/A 14023112 upstream_gene_variant
G/A 14023145 upstream_gene_variant
G/C 14023154 upstream_gene_variant
T/C 14023161 upstream_gene_variant
T/C 14023164 upstream_gene_variant
C/A 14023184 upstream_gene_variant
T/C 14023213 upstream_gene_variant
G/A 14023216 upstream_gene_variant
G/T 14023224 upstream_gene_variant
G/A 14023229 upstream_gene_variant
G/C 14023235 upstream_gene_variant
A/C 14023258 upstream_gene_variant
T/A 14023308 upstream_gene_variant
T/C 14023484 upstream_gene_variant
C/G 14023498 upstream_gene_variant
G/T 14023542 synonymous_variant p.Pro600Pro
T/A 14023674 synonymous_variant p.Ser644Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01113.1
MENEREDEIEDMSTSPPSLGSLQFAGSNGFGHSMEFMSQAYLPNMYTDIDIKIEDSNFNQDPPLPIYLKFEDVEYKVRASQAASTNPVKSVMSKVAIQHNLGEDKYKKILKGMTGSIGPGEILALMGPSGSGKTTLLRVVGGRLVENVKGKITYNDVRFNAAVKRRIGFVTQEDVLFPQLTVEETLIFSAFLRLPGNMSEQQKYARVETTIKELGLERCRHTKIGGGYLKSISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTAANRLLLTLQGLAKGGRTIITTIHQPSSRIFHMFDKLLLISEGYPIYYGKAKDTMQYFSSLSFTPEIPMNPAEFMLDLATGQVNNISFPQDTFKDQESADRSKSVIKYLQLKYKETLEPKEKDENHGAANTPEHLQLAIQVKKDWTVSWLDQFFILYKRTFRARCKDYFDKLRLVQALGIALLLGLLWWKSSTTTEAQVRDQVGLMFYICIFWTSSCIFGAVYVFPFEKVYLVKERKADMYRLSVYYVSSTLCDMVAHVFYPTFFMLILYFMAGFKRTVACFFLTLFAVLLIAITSQGAGELFGAAVMSIQRAGIVASLILMLFLLTGGYYVQHVPKVMQWLKYLSFVYYGFRLLLKVQYSGEQLYECESERGCRTLQSSPSFDTVNLNGGLTEAWIMVAMALCFRVLAYFCLRRRIEVRN*


CDS Sequence:
>Vu_01113.1
ATGGAGAATGAAAGAGAAGATGAGATTGAGGATATGTCAACGTCACCCCCGTCTCTGGGCTCCCTGCAATTTGCAGGGAGCAATGGCTTTGGTCACAGCATGGAGTTCATGTCTCAGGCATACCTTCCCAATATGTACACTGATATTGACATAAAAATTGAGGATTCCAATTTCAACCAAGATCCCCCCCTCCCCATTTATCTCAAGTTTGAGGATGTAGAGTATAAGGTGAGAGCTAGCCAAGCGGCTTCCACTAATCCTGTGAAGTCAGTGATGTCAAAAGTTGCCATACAACACAACCTGGGAGAAGATAAATACAAGAAAATTTTGAAGGGTATGACAGGAAGCATTGGCCCTGGTGAAATTCTTGCTTTGATGGGTCCTTCTGGGAGTGGAAAGACAACCTTGTTGAGAGTTGTAGGGGGAAGATTAGTTGAAAACGTAAAGGGAAAGATAACTTACAATGACGTTCGATTTAATGCAGCTGTCAAGAGAAGGATTGGCTTTGTTACACAAGAGGATGTGCTTTTCCCACAACTTACAGTAGAGGAAACATTGATCTTCTCTGCATTCTTAAGGTTACCGGGCAATATGAGCGAGCAACAAAAATATGCAAGAGTGGAGACCACTATCAAGGAGCTAGGCCTTGAAAGATGTCGCCACACAAAAATAGGTGGAGGATATCTCAAAAGCATATCTGGAGGAGAAAGGAAGCGAACCAGCATAGGCTATGAAATCCTTGTTGATCCTTCACTGCTTCTACTTGATGAACCAACTTCAGGCCTTGATTCCACAGCAGCAAATAGACTCCTTCTCACTCTTCAGGGACTTGCCAAGGGTGGAAGGACCATAATCACAACAATTCACCAGCCATCCAGCAGAATCTTTCACATGTTTGACAAACTTCTTCTTATATCAGAAGGATACCCCATTTACTATGGGAAGGCCAAGGACACAATGCAGTACTTTTCATCGTTGAGTTTCACCCCGGAAATACCAATGAATCCTGCAGAATTCATGCTTGACTTGGCAACTGGACAAGTGAATAACATAAGCTTTCCTCAAGATACTTTCAAAGATCAAGAATCTGCCGACCGCTCAAAATCTGTTATTAAATATCTACAACTGAAGTATAAGGAAACACTGGAACCAAAAGAAAAAGATGAGAATCATGGAGCAGCAAACACACCAGAACATCTTCAGCTTGCCATTCAGGTTAAAAAGGACTGGACAGTGAGTTGGTTGGACCAATTCTTCATTCTTTACAAGAGAACATTCAGAGCAAGATGCAAGGACTATTTTGATAAATTAAGATTAGTTCAAGCACTTGGCATTGCTCTTTTGTTGGGGCTACTTTGGTGGAAATCCTCAACCACTACAGAGGCTCAAGTTAGAGATCAGGTTGGATTAATGTTCTATATCTGTATATTCTGGACATCTTCATGCATTTTTGGAGCAGTCTATGTCTTTCCATTTGAAAAGGTCTATTTGGTGAAAGAAAGGAAAGCAGATATGTATAGACTGAGTGTATACTACGTAAGCAGCACTCTGTGTGATATGGTGGCGCATGTTTTTTACCCTACTTTCTTCATGCTTATCTTGTACTTCATGGCTGGGTTTAAGAGGACTGTTGCTTGCTTCTTCCTGACTTTGTTCGCGGTGCTGCTAATAGCTATAACAAGTCAAGGAGCAGGAGAACTATTTGGAGCTGCAGTTATGAGCATTCAAAGAGCAGGGATAGTTGCTTCTTTGATACTAATGTTGTTCCTTCTCACCGGTGGCTACTATGTCCAGCACGTACCGAAGGTGATGCAGTGGTTGAAGTATTTATCGTTCGTGTACTATGGCTTCAGACTTCTTCTGAAAGTGCAGTATTCAGGAGAACAACTATATGAGTGTGAAAGCGAGAGAGGGTGCAGAACACTGCAGAGTTCTCCATCATTTGACACAGTAAACTTGAATGGAGGCTTAACTGAAGCATGGATTATGGTAGCCATGGCTCTGTGCTTCCGTGTCTTGGCCTACTTCTGTCTCCGCAGACGAATTGAAGTTCGAAATTAG


Promoter Sequence:
>Vu_01113::LG1:14017633-14019633(+)
GTGTTCATCATACGAACCTAGAAGAAAGTGTAGGTGAGGGTAGTAGCAACACCTGTCTACCTCGTATACTAGGAATTGATGTAACTGTTGATTTACGGGGAAGTTAATGTGACATCATGAGATCAAATATTGTTATATATATCATTATGACATAGTCAAGACACTTGTTGCAACCACCGTCATGCACTCTTTTATTGTTTTTAGGTATCTTTCGCTAATTTCATGCCTTCAACAACACAAAAAATCTTCTTTTCTGCTAAACTTGATGCAGAAGTTTCATCTTACTCAGCACAAATCCACATTTTGCTTTTCTGATGTTTCACCAACTGGTTGGTGCCATTAACGGATAAAGTCATCCAAGCTTTCTTTTCTCCTTTCCATCACAAACTGCACCTATTCTACCTTGTACATTCTTCAAGGAAAACCCCTTTTTCTTTTCTGCAATTCTATTTTATTGTGTAAATATTGTGTTATAGTTTAAACTTACGAGAGTTAGATTTTGTGAGTGTATAAATTATATTTTGTATCTGTGTTAAATAATTTATGTTGCTGTACAAGATTATTTTTAGTTATTTGTATATGTTTTTTTTTTACAATTTATTGATAAATTAATTTGAGAATAAAGATAGGAAAGATAAAATAAAAGGGACAATCCCTTGAGAAATTATGGATAAAGATAAAAAAGGATGGTGTTTTGAGATTATTGAATAAGTTTTTATAACTTGCAATTTAAACTAGGGGCTCAGGATTAAATTTAAGAAATATATTGTAAAAAATAAATTTACATGCTGTATCTAAACTCAAGCGTAAAAACAAAACATATTTAATTTTCTCTTGTTAAAATATTAGTTAAATTTATTTAACTTTCATGATTTAATTAGAAAAATTATAGACTAGGATAAAGAGCATAATTTAGTAAGAATATTTGATTTAATATTGTAATTTTGATTGATAAATAAGTGTGCGATATAATGGTACAATATTCTAATTTCCAAATATGTAATACATTAATGTCACCACAATATAAGAAAAGAATTAAAATTGAAAATTTATAATATATATGGAAGATTCAATTGACACCATTAGATGAAATACTGTTATCTCTTAATCTTTCTGTTAATTCTCTCAACAGTGCATTAAAGTTAATATTATCTAAAATTTAAAACACTTTTATTAACTATTGATAGCTATAGTAAAGATTTTTCTTGAAATTACGAGACCAAAAACCTCTTTTATATTTTTAATGAAAAAAAAAATCATTTTTAATTCCTTAACTCTTGCCTTGAAGTAATGGGTAAGACCTGACAAAATCAAACTTATAATGTTTACAAATATTAAATATTAAACATGTTTGTATCAATGTTTATCAGACAAAATGATCACAAATCACTACACCAAACGTATTCAACAATGAACATAACTAAAAAAAAACAATAGATTGAGCTGAAATCAAGTTTTGTGAGTAAAAAGTTATACCTGTTATCCTGTTCGATGATCCCACAGCACTAAAAGAATCATCAAATAGATATAACATGTTTTGTGAGTAAAATGTATGCAGCACCAAATACTTGAAAAAGAGAAGTGAATCTGCATAATGGACATGGCTGTTTTGTAATTTCGTCGTGTTTTCATTGTAAAAGAAGTATTCCTTATTCTTTTCAAATGAACCGAGTCACATCAATCTAATAAACATGAGATTGAAGACATGCAGAAGTGTATTTCACAAAGGTTCAGTTTCTTACTAAGCCAATTTATTCATGTTCTTGACATGTTCTTATGACAAATCACAATGGTTGAATTCAAAGGATATGGGAGAACAACATTCATACCTTTCATGGACCAAGAAACTGCCATGAAAAGTACGTGGCCCACCAACCAAAATTCTGCCTCCATGCATGATATATAGGCAAGCTCTTGGTCTGATGCAGTTGACTCACGGTATCTAAACTGTGTTATTAGAATCCTTGACTTCAACGAGTTCTCATTAGCTTCCAAGATCA


Gene Sequence:
>Vu_01113(+)
ATGGAGAATGAAAGAGAAGATGAGATTGAGGATATGTCAACGTCACCCCCGTCTCTGGGCTCCCTGCAATTTGCAGGGAGCAATGGCTTTGGTCACAGCATGGAGTTCATGTCTCAGGCATACCTTCCCAATATGTACACTGATATTGACATAAAAATTGAGGATTCCAATTTCAACCAAGATCCCCCCCTCCCCATTTATCTCAAGGTAGAGAAAATTAGTCAAACTCTGCAACTTAATCAGGATTTTCTTTCCTCCTACATCACTAGAAATTATTGCATGGTTAGAAACTATGTACACAAAATTTTGGTCAATTTTGTTGAAAGTAATTCAAACGTGAGTCTAAGTTTCATATCAGACAGAGATAACAACGTTATACATCATATAAAATGAAAGACACATAAACCTAATAACATGAGATTTTAGATTAAAACTGGTGTGAAATTCTTATCTGGGTGTGGATTAATGTCACATAATTTTGGTCAATTTCAGTGACATGTAAACTAGCTTTTCAATTTATGAAAAAGAGTTAATGAAACTCAGCTACACACTGCTGCGTATGTCTCAAGTGAAAATTGGCAGGAACTGACCCAGATCATATGATAATTTATTCTTTTGCGTTAGGGCAAAGTTTTTCTTTTTATCAGAATCGTAGTTCGTCATGCAATGCACTTCGAGGGTCTTGATGATTTTCCACTTTTATTGAAAACTGATTTCAGTCTGTCATAGTATTATCATCAACAGTGTTTTGTTCCTGATTGTGTAGTTATGATTGTTGTCATTTGCCTTAAAGATTCTCAATATTGTGCAGTTTGAGGATGTAGAGTATAAGGTGAGAGCTAGCCAAGCGGCTTCCACTAATCCTGTGAAGTCAGTGATGTCAAAAGTTGCCATACAACACAACCTGGGAGAAGATAAATACAAGAAAATTTTGAAGGGTATGACAGGAAGCATTGGCCCTGGTGAAATTCTTGCTTTGATGGGTCCTTCTGGGAGTGGAAAGACAACCTTGTTGAGAGTTGTAGGGGGAAGATTAGTTGAAAACGTAAAGGGAAAGATAACTTACAATGACGTTCGATTTAATGCAGCTGTCAAGAGAAGGTTAGAAAACTTCATAGGAATCAGAATCCATGCATGACTTGAGCTTTGATATTTAACAGAACATGATGGCTATCAGACTATACGCTAATGTTGACTCTTGTGTTTGTTTTTATTTTCTGTGTAATAGGATTGGCTTTGTTACACAAGAGGATGTGCTTTTCCCACAACTTACAGTAGAGGAAACATTGATCTTCTCTGCATTCTTAAGGTTACCGGGCAATATGAGCGAGCAACAAAAATATGCAAGAGTGGAGACCACTATCAAGGAGCTAGGCCTTGAAAGGTGTGTCTAGAATATTACTGAATGCTTAAATTAGCTACAAGTTCCTCCAAAAGAAAGAAATGAAACTGTTTGCCTGAATAATCTCTTGTGTAACCATAGATGTCGCCACACAAAAATAGGTGGAGGATATCTCAAAAGCATATCTGGAGGAGAAAGGAAGCGAACCAGCATAGGCTATGAAATCCTTGTTGATCCTTCACTGCTTCTACTTGATGAACCAACTTCAGGCCTTGATTCCACAGCAGCAAATAGACTCCTTCTCACTCTTCAGGGACTTGCCAAGGTATCAGTACTTATATTTAAGTGTCATTTTGAGTCTTTTTTTTAAGTATTTGGGTCAAATTTGTTCAAAAATTACAAAAATAGATAAGTCAAAAAATAATTACTAATCATAGATTAAGTTGTGTAAATTTATGATGACTTCAAAAACAAAATCGTGAGGACTCCAGAAGTCATAAGTCATGACAACTTTAAAGTTCTCACAATTTTGTTTTTGAAGTCGTCGTAAATTCGTCCATACATGATAGTTATTTTATGACTTGTCCATTTTCATAATTTTCTGGGTAAATTTCCACATATATGTAAAAAAACCATCATTTTGATAACATGTTTCAAGTCTAGATTCACAATTTGGAATATATGCTGAAAACACTTCTGATTTAGGGTGGAAGGACCATAATCACAACAATTCACCAGCCATCCAGCAGAATCTTTCACATGTTTGACAAACTTCTTCTTATATCAGAAGGATACCCCATTTACTATGGGAAGGCCAAGGACACAATGCAGTACTTTTCATCGTTGAGTTTCACCCCGGAAATACCAATGAATCCTGCAGAATTCATGCTTGACTTGGCAACTGGACAAGTGAATAACATAAGCTTTCCTCAAGATACTTTCAAAGATCAAGAATCTGCCGACCGCTCAAAATCTGTTATTAAAGTAAGACTCTGCATTATATATCTTTTATGCATGTTCAATCTCATTATACCACTTAATAATCGTTCCGTTATTCTTAGTATCTACAACTGAAGTATAAGGAAACACTGGAACCAAAAGAAAAAGATGAGAATCATGGAGCAGCAAACACACCAGAACATCTTCAGCTTGCCATTCAGGTTAAAAAGGACTGGACAGTGAGTTGGTTGGACCAATTCTTCATTCTTTACAAGAGAACATTCAGAGCAAGATGCAAGGACTATTTTGATAAATTAAGATTAGTTCAAGCACTTGGCATTGCTCTTTTGTTGGGGCTACTTTGGTGGAAATCCTCAACCACTACAGAGGCTCAAGTTAGAGATCAGGTAGTTTTTTCGATGATTTTGTTTTCACATTTTACAAGGCTGGGACATTAACATTAGAACGAACCACTATCTTTGTGCAGGTTGGATTAATGTTCTATATCTGTATATTCTGGACATCTTCATGCATTTTTGGAGCAGTCTATGTCTTTCCATTTGAAAAGGTCTATTTGGTGAAAGAAAGGAAAGCAGATATGTATAGACTGAGTGTATACTACGTAAGCAGCACTCTGTGTGATATGGTGGCGCATGTTTTTTACCCTACTTTCTTCATGCTTATCTTGTACTTCATGGCTGGGTTTAAGAGGACTGTTGCTTGCTTCTTCCTGACTTTGTTCGCGGTGCTGCTAATAGCTATAACAAGTCAAGTAAGCCATATTGAGGGTTTTGTTTACATATATGGAACAACTTTGTGTAAATATTATGAAAATGGACAAATAAAAAAGAAATATTACTCATGAGATAAGTTGTGTGGATGAACTATCAACTCTGATACCAATTGTAGGAAGAGACAATACACATAGATCTCTACAATAGTAAAATATCGTCCATTCTGGGCCAAACCCTCACGAATTTGCTTTTGGTACCACTTCAAAGTATCTCTTACAAAGAAAGTTTTTTACATGTATAAAAACTCGTGTTCACCTCTTGTTTTATCTCGTGTAGAACTTTGTTTATATTCTAACAATCCTTTCAATAAGATCTTTACACAACTTATTCATAAGAAAATGAAGTCATAAGGAATCATGATGTTAATATTAATTTATGAGAAAATGAAGTCGTCATTTCTACTCTTGATGATTTCATTTTTTTAAGAAGTTGTTTGGGATTCTCACGACTTTGTTTTTTAAGTTGTGATGAATTCACACGATTTACCAATAATATTTTTTTGACTTGCGCACTTTCGTAATGTATGGGCAAATTTGCTTAGGATATGTAAAAAAGAAAAACCCATGTTGAGACATTATATGTAAATGGAACATCATATGTTTGGAGCTTTGATGAATACAACAATCTTAACAGGGAGCAGGAGAACTATTTGGAGCTGCAGTTATGAGCATTCAAAGAGCAGGGATAGTTGCTTCTTTGATACTAATGTTGTTCCTTCTCACCGGTGGCTACTATGTCCAGGTATGATTTTGGTAAGAATTGCAGTATAATAACTTTTGCATTCAAATACCTTGTAACACAAAATGGTTGATTTTGTTGCATGCAGCACGTACCGAAGGTGATGCAGTGGTTGAAGTATTTATCGTTCGTGTACTATGGCTTCAGACTTCTTCTGAAAGTGCAGTATTCAGGAGAACAACTATATGAGTGTGAAAGCGAGAGAGGGTGCAGAACACTGCAGAGTTCTCCATCATTTGACACAGTAAACTTGAATGGAGGCTTAACTGAAGCATGGATTATGGTAGCCATGGCTCTGTGCTTCCGTGTCTTGGCCTACTTCTGTCTCCGCAGACGAATTGAAGTTCGAAATTAG