Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01067	LG1	13705273	13708646	PREDICTED: scarecrow-like protein 21	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, sequence-specific DNA binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding

SNP	Position	Effect	Amino acid change
T/G	13705387	3_prime_UTR_variant
G/T	13705423	3_prime_UTR_variant
C/A	13705428	3_prime_UTR_variant
T/G	13705429	3_prime_UTR_variant
A/C	13705434	3_prime_UTR_variant
G/T	13705528	3_prime_UTR_variant
A/C	13705559	missense_variant	p.Ser534Ala
T/G	13705651	missense_variant	p.Lys503Thr
G/A	13705728	synonymous_variant	p.Leu477Leu
A/C	13705830	missense_variant	p.Asp443Glu
T/A	13705831	missense_variant	p.Asp443Val
A/G	13705902	synonymous_variant	p.Phe419Phe
C/T	13705935	synonymous_variant	p.Glu408Glu
T/C	13705971	synonymous_variant	p.Ala396Ala
T/C	13706351	missense_variant	p.Met270Val
G/T	13706565	synonymous_variant	p.Val198Val
T/G	13706715	synonymous_variant	p.Ser148Ser
T/C	13706898	synonymous_variant	p.Ser87Ser
T/A	13706927	missense_variant	p.Ser78Cys
G/T	13706957	missense_variant	p.Pro68Thr
C/G	13706977	missense_variant	p.Ser61Thr
A/G	13707006	synonymous_variant	p.Tyr51Tyr
G/A	13707117	synonymous_variant	p.Val14Val
G/A	13707172	5_prime_UTR_premature_start_codon_gain_variant
T/A	13707175	5_prime_UTR_variant
C/T	13707309	5_prime_UTR_variant
T/G	13707369	downstream_gene_variant
C/G	13707374	downstream_gene_variant
A/G	13707375	downstream_gene_variant
A/T	13707382	downstream_gene_variant
T/G	13707419	downstream_gene_variant
C/T	13707449	downstream_gene_variant
C/T	13707450	downstream_gene_variant
A/G	13707548	downstream_gene_variant
T/C	13707721	downstream_gene_variant
T/C	13707740	downstream_gene_variant
G/A	13707745	downstream_gene_variant
A/G	13707968	downstream_gene_variant
C/T	13707993	downstream_gene_variant
G/C	13708033	downstream_gene_variant
G/C	13708072	downstream_gene_variant
A/C	13708125	downstream_gene_variant
G/A	13708194	downstream_gene_variant
A/T	13708215	downstream_gene_variant
C/T	13708224	downstream_gene_variant
T/C	13708270	5_prime_UTR_variant
A/G	13708283	5_prime_UTR_variant
C/G	13708288	5_prime_UTR_variant
C/T	13708336	5_prime_UTR_variant
T/C	13708342	5_prime_UTR_variant
G/A	13708567	5_prime_UTR_variant
C/A	13708580	5_prime_UTR_variant
T/G	13708598	5_prime_UTR_variant
G/A	13708636	5_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01067.2

MQMSQKHNMSYEAVQNLGSCCFLQSENLDYYSSSDNSSHATYPSVRTLEQYCTLESSTKNSFPSLNSPTTVSFSPNHSPLSKLQPKSYVLSSHSSLEITNDSIENESCLTHNDNELRHKIRELESAMLGHDADILDMYDTVIPEESDSFLLEAERWKKMMEMISRGDLKEMLCACAIAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGRELLSHMHLLYEISPYLKFGYMSANGAIAEVMKGETEVHIIDFQINQGIQWVSLIQALAGRHGGPPKIRITGFDDSTSAYAREGGLEIVGERLSALAQSYNVPFEFRALEVAPTEVEIKDLELRPGEAIAVNFAMMLHHLPDESVDGQNHRGRLLRLAKCLSPKIVTLVEQESHTSNLPFFPRFVETMNYYLAIFESIDVALPRDNKERINVEQHCLAREVVNLVACEGAERVERHELLKNWRSRFTMAGFSPYPLNSFITSSIKNLQQSYQGHYTLEERDGALCLGWMNQALITSCAWR*

>Vu_01067.1

CDS Sequence:
>Vu_01067.2

ATGCAAATGTCTCAGAAACATAATATGTCCTACGAGGCTGTCCAAAATCTTGGGTCATGCTGCTTCCTACAAAGTGAGAACCTAGACTACTATTCATCCTCTGATAACAGTAGCCATGCAACCTACCCTTCTGTTCGTACTTTAGAGCAATATTGCACCCTGGAATCTTCTACAAAGAACAGTTTTCCTTCCCTAAATTCCCCAACTACTGTCAGCTTCTCACCTAACCATAGCCCACTCTCAAAGCTACAACCAAAATCATATGTGTTGAGTTCACATAGTTCTCTTGAAATTACTAATGACTCAATAGAAAATGAATCATGTTTGACGCATAATGACAATGAGCTGAGGCACAAGATAAGAGAGCTTGAAAGTGCTATGTTGGGACATGATGCAGATATTCTGGATATGTATGATACTGTAATTCCGGAGGAATCTGATTCATTTTTGCTAGAGGCAGAAAGGTGGAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTGTGCATGTGCAATAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTACGCAAAATGGTCTCAGTTTCTGGCAACCCAATCCAACGATTGGGGGCATACATGTTGGAGGCTCTTGTTGCAAGACTGGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTAGGGAACTCCTTTCACACATGCACCTACTTTATGAAATCAGCCCATATCTCAAATTTGGTTACATGTCTGCAAATGGAGCTATTGCTGAAGTCATGAAGGGGGAAACTGAAGTCCACATAATTGATTTTCAGATAAACCAGGGAATACAATGGGTGAGCCTAATCCAAGCTCTTGCTGGCAGACATGGAGGACCCCCCAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCCAGGGAAGGAGGTCTTGAAATTGTGGGAGAAAGGTTGTCAGCACTTGCACAATCATATAATGTACCCTTTGAGTTCCGTGCCTTAGAAGTTGCTCCCACTGAGGTTGAAATTAAAGACCTTGAACTTCGACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCACCATCTTCCAGATGAAAGTGTGGATGGTCAGAACCATCGTGGCCGGTTGTTGAGACTCGCAAAGTGTTTGTCTCCAAAGATCGTGACACTAGTTGAGCAAGAATCACATACCAGCAACCTCCCATTCTTTCCCCGTTTTGTTGAGACAATGAACTACTACTTGGCTATTTTCGAATCAATTGATGTTGCTCTTCCAAGGGATAACAAAGAAAGGATTAACGTGGAACAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAAAGAGTGGAACGTCACGAGCTTCTCAAGAACTGGAGATCACGTTTCACCATGGCTGGATTCTCACCATATCCATTGAACTCCTTTATTACCAGTTCGATTAAAAATCTTCAGCAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGATGGAGCTCTATGTCTTGGTTGGATGAATCAAGCTCTTATTACTTCTTGTGCTTGGAGGTGA

>Vu_01067.1

Promoter Sequence:
>Vu_01067::LG1:13708646-13710646(-)

TTGAGTAGCCGTAAAACAAAAGTGGAAAAAAAAGAAGAAAATGATAGCCATTAGAAATGTATGACGTATGGCTGACAATAGAATCGTGTCATCGTATATTATGATTTATGACATGGGCAATAATTATGGTATTGAAAGTTAGAACAAACGGAAAAGAACAAAGTGAAGACAGTTTAGTTCAAATAAACTAAAATTTCAGAACTGGATAACAAAAAAACGGGTTTTTAAGACTGAAAAGAAAGAAAAGAAATGCAGCATTAATTCTGATGTGAAACAGATAAAGATACATTTATGCATGTCGGTGCGATTGCTCGTAAAAGTGGTTGAATTGAACCCAAAAACGTGGAGTTGGTGGTTAATTAAATGTATAATTTGGTATCAACCATCGCATTGTGCGGATAATTTAATAGAATGGATCAATTTAGTTGACCAATTTATGAGAGTCATTTCTAGTTATTTACTTTTGAATTATATACATTTCTATTCTTTAAATTTAGATGCAAAATTAAAGTTTATTTTAATATATTTTAGTCTAAAATTTAAAAAATAATAAATCTAATCATTTTAAGTTAATAACGTAAAATTTCATTTTATGTGTTTAATGATATTTTAGTTTAAGTTGAAAATGTTCATGCCTAATATTTTACTAGTTAAATTTTTTTAAAAGAAAATGAAATTATAAAAATTATATTTATTCATCTTTTAAATTTGAGAATTATATCAAAATTTATAATAGAAATAAATTTTAATTTTACGTAAAAATTTAAAATTTAAAAACTAAATAAATCATTAACCATTTATTTATTTTTTAATTTAACACTCAAATATCTTAAAAATATGATATTTATTGAAGATAAGTTAAGTTTGCATGTTAAACAAAGGGTTAAATATGTTTTTGGTCTTTAACTTTTAGTGAAAATTGGAATTAGTCCATCTTCAAAATTTTTGCCTAATTTAGTCCCCAGACTTTAAAAATGTGTGAATTTAGTCATTTTAACTAAATTTTGTTAGGTTTATTTGATGTTTCATGTGCGTTTCATGATAGCATTTGAGTTGTTTATATCGTTTAGACACATTTTTAAACAAATTCAAAATTTATAATCTATGTCTGCGTCAAAAATACTTGTAAATATATATTAAGTAGAGTTAGTAATTTAAATTGTAAAGTTAAAATTTTCAGCTTGAATATGGCTTGACCATAATGATATTTAGAATGGGAAAGCGTGTGGGGTCAATGGAAAAAACACGATTCAACCACCTTTACGACAGCACACGCACACACTTTCTTTTGCCTTTCTGAGACGCACAGAACACAAGAGAAATCGCCGACCAAACTTCATGTCGATCAAAATTAATTACTTCTATTGATGTGGAAGATGTTTGATTGATGTAAGAAACCACATAGTATATCTTTAGGGTTTGCTTTACCTGGAAAACAGTGATGAGTGAGAGGCAAAGAATAAATATTAAATCTATAATTTCAATAAACAAATTTAAAATCTAAATTAAAAATGTTTACACGTCATGCACGTGTGTCAGCATTTGGAACAGTTTGAACCAGATAGAACACAACAGTTTCATACTTCTTTGTTATGCATTAATAATTTTAACAGGTGAATATGTAAAGTAATTTTTAAAAAAATATGATATTAATATATATATATATATATATATTATCTTATTTTAATAAACAAAATTAATTTTATTCTTTAATAGAGAATTTTAAGTTGTGTTAAAATTTAGATGCTATTTAGTTTCATATTGAGGGAGCAGTAAGAAAATGAGTTTAGAAAAATGAAGAAATAAAATAAGCTTAAGAGGAGATTAATAGAAATTACAGGAATTTAACTAAGTTTATTGACTCCGAGTAAACGAAAACTTTGGGAGATAAAATTTAGACGTGATTGAATACGTTAGTTTAGTGGCTTAAAAGTAATTTCATGAGCCAAAAAAAAAAGACTTTTTCGTTGTTTAAGTAAACGTTTTCTATAAAATATAGC

Gene Sequence:

>Vu_01067(-)

ACTCAACAACCTTGTATTTGGTCTTGCCTCCATTCTTGAATAAACAAAAGCCCACATGCATGACAAGCCCCGGTTACTTCTAGCTGCAGAAGTGCTTCGTCCTTGGATTTGTTCTCTGTTGTTTTGGCTTCAAAGTGCAGATCATGCTTTCCTTTTCAGTTAAGGTGAGAGTCTCTGAAAGTATTTGCTGATCTTCTTTTGTATGATGATGTTATGGGAGGAAACTGATTTTACATATTTTACCATACAAGTGTCTGTGCTAGTTAAGTTGTCGTTGAAGGAGAAGCAGCTTCTTGTTTTATTGACCAGTGAAGAAAAAAGTTGCTTTTTATGGCAGTTATTGAGTTTGTGAGAATTGGTTGCTGATTAACTTTCAATATGGTATGTTTAATTGGGAGCAATCACTTTGAAGTTTGAGAATTGCTTGCTGATTTTTCGCTTTTTTTGTCCTGCTTTTCTGTTTTCTTAGGGAAAAGTTTAGTGGAACACTTCGGATTTTGTTGAGTAAACAGGGTGATTTTTCAGAATTTCTGTGTGTTTGAACTTGGAGTCTATTTGTATTTGATTCCTTAAACGTTTTTTGGTTTAAACTAGGAAGTCCCTATTCACCTTTCTATGTAGTTGAGTTGAAGTTTTGAGCATGTTTCAAGTTTGAGTTCAAGAAAATACAAATGGATCTTCTGAGTATTATTTCTTTAAGGAATTGAAAATCATGAATGGCATATGGGATGCCTTTCTGAACAATCCTATCTTTTCACTTTTATAATGAAGAAGGAATAATGGGACAAAGAATGAAAAAAGCTCTTCCTTTTAAGTAGCAGCAGGTGTTCCAAGATTCATCATTTAATTGGTTTATCAAGCTAATCTCCATTTCTAGATTGCATCAAATTTGAAAGACAAACAATAACATGGTGGAAAGTTAAAAACTAAAGCAGAGGCTGATAAGTAATAATTGTGAAAAGATTCGTATAAAATGATAAAATCGCAGTTTTGTACATATCTTAAGAGCTATTGTATGCATGAGGATTGTGAAAAATCAGACACTCTCTTAGGTCTTCAATAAACAATCCAACTCTGCTTTTACTGGTTTCTAGACTTTATTTGAGCAATATATTCCAAAGACCTTGGTTTCTGACCTCAAAAGAATACTAATTTTAGGCAATAGCCTCAACTCTACCTGCTTGTTGTTCTTTCAGGGCTGAGACTGCGTTCTTGTTTTATATAGTTATTGCTCTCGTTATTTTGTTATCTAACTTTGTTGCTTTAATTTTTGTGTCACCATTTCTGCAGAATATCACAGATTTCGAGTACAGTGGTCAAATTCAGCTGGAATTTGAGTAAAATGTGGACAACGAGCACAGCTTAAATAGCACCAACAATTCTTGTTCCAAAAAAGGAGAGAACACTTAAGTTTGGATTGTTTATATTAGAAAAACACATTGGTGTTGGTGTTTTCTACGTATATTCAAAGAACCGGTTAATTTTCAAATGCAAATGTCTCAGAAACATAATATGTCCTACGAGGCTGTCCAAAATCTTGGGTCATGCTGCTTCCTACAAAGTGAGAACCTAGACTACTATTCATCCTCTGATAACAGTAGCCATGCAACCTACCCTTCTGTTCGTACTTTAGAGCAATATTGCACCCTGGAATCTTCTACAAAGAACAGTTTTCCTTCCCTAAATTCCCCAACTACTGTCAGCTTCTCACCTAACCATAGCCCACTCTCAAAGCTACAACCAAAATCATATGTGTTGAGTTCACATAGTTCTCTTGAAATTACTAATGACTCAATAGAAAATGAATCATGTTTGACGCATAATGACAATGAGCTGAGGCACAAGATAAGAGAGCTTGAAAGTGCTATGTTGGGACATGATGCAGATATTCTGGATATGTATGATACTGTAATTCCGGAGGAATCTGATTCATTTTTGCTAGAGGCAGAAAGGTGGAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTGTGCATGTGCAATAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTACGCAAAATGGTCTCAGTTTCTGGCAACCCAATCCAACGATTGGGGGCATACATGTTGGAGGCTCTTGTTGCAAGACTGGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTAGGGAACTCCTTTCACACATGCACCTACTTTATGAAATCAGCCCATATCTCAAATTTGGTTACATGTCTGCAAATGGAGCTATTGCTGAAGTCATGAAGGGGGAAACTGAAGTCCACATAATTGATTTTCAGATAAACCAGGGAATACAATGGGTGAGCCTAATCCAAGCTCTTGCTGGCAGACATGGAGGACCCCCCAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCCAGGGAAGGAGGTCTTGAAATTGTGGGAGAAAGGTTGTCAGCACTTGCACAATCATATAATGTACCCTTTGAGTTCCGTGCCTTAGAAGTTGCTCCCACTGAGGTTGAAATTAAAGACCTTGAACTTCGACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCACCATCTTCCAGATGAAAGTGTGGATGGTCAGAACCATCGTGGCCGGTTGTTGAGACTCGCAAAGTGTTTGTCTCCAAAGATCGTGACACTAGTTGAGCAAGAATCACATACCAGCAACCTCCCATTCTTTCCCCGTTTTGTTGAGACAATGAACTACTACTTGGCTATTTTCGAATCAATTGATGTTGCTCTTCCAAGGGATAACAAAGAAAGGATTAACGTGGAACAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAAAGAGTGGAACGTCACGAGCTTCTCAAGAACTGGAGATCACGTTTCACCATGGCTGGATTCTCACCATATCCATTGAACTCCTTTATTACCAGTTCGATTAAAAATCTTCAGCAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGATGGAGCTCTATGTCTTGGTTGGATGAATCAAGCTCTTATTACTTCTTGTGCTTGGAGGTGATGATCCAAAGCAACTGGTTCATATTTGTTATTGCAGACTTTTGTTAGTTTATGTATCATCCTAATCCTAGCAGAATTCCTCGTTTCAAAGTCAAACTACTCTGTAGTTTGTTAGAACACACTATATTTATGTCAATAATTCCAGTACCAGCAAAAACGATACATAAAATTTAGATCCCCCTTACAATAATTCCAGTACTAACGTGTATTATGTATTTTTCTATGATACCCCTTACAAAGATAAAAAGAATAATGACAATTTACACCTGC