Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01062 LG1 13673311 13675641 PREDICTED: probable inactive receptor kinase At5g53320
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root development, protein phosphorylation, protein phosphorylation, protein phosphorylation, meristem development, root development
Cellular Component   located in   plasma membrane
Molecular Function   enables   protein binding, protein kinase activity, protein kinase activity, protein binding, protein binding, kinase activity, protein kinase activity, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
A/G 13673374 stop_lost p.Ter586Argext*?
A/G 13673377 stop_lost p.Ter585Argext*?
T/C 13673484 stop_lost p.Ter549Trpext*?
A/T 13673485 stop_lost p.Ter549Lysext*?
G/A 13673560 stop_gained p.Gln524*
T/A 13673586 missense_variant p.Asp515Val
C/A 13673587 missense_variant p.Asp515Tyr
A/C 13673675 missense_variant p.Asp485Glu
T/G 13673680 missense_variant p.Asn484His
G/C 13673743 missense_variant p.Leu463Val
A/T 13673784 missense_variant p.Phe449Tyr
T/C 13673848 missense_variant p.Lys428Glu
A/G 13673971 splice_acceptor_variant&intron_variant
C/G 13674039 intron_variant
A/G 13674071 intron_variant
G/T 13674110 intron_variant
T/G 13674120 intron_variant
A/G 13674162 intron_variant
A/T 13674174 intron_variant
G/A 13674177 intron_variant
A/G 13674412 downstream_gene_variant
A/T 13674465 downstream_gene_variant
T/G 13674505 synonymous_variant p.Gly379Gly
G/A 13674598 synonymous_variant p.Ile348Ile
G/A 13674642 synonymous_variant p.Leu334Leu
T/A 13674823 missense_variant p.Gln273His
G/C 13674825 missense_variant p.Gln273Glu
A/T 13674827 missense_variant p.Val272Asp
T/A 13674833 missense_variant p.Lys270Ile
T/C 13674895 synonymous_variant p.Leu249Leu
C/T 13674912 missense_variant p.Val244Met
A/G 13675028 missense_variant p.Ile205Thr
C/T 13675098 missense_variant p.Val182Ile
A/G 13675099 synonymous_variant p.Asn181Asn
G/A 13675197 missense_variant p.His149Tyr
C/A 13675234 missense_variant p.Leu136Phe
T/G 13675238 missense_variant p.Gln135Pro
A/G 13675240 synonymous_variant p.Asn134Asn
G/T 13675246 synonymous_variant p.Thr132Thr
G/C 13675247 missense_variant p.Thr132Ser
T/C 13675300 synonymous_variant p.Gly114Gly
A/T 13675307 missense_variant p.Ile112Asn
T/A 13675314 missense_variant p.Asn110Tyr
G/T 13675373 missense_variant p.Thr90Lys
A/G 13675388 missense_variant p.Leu85Ser
C/A 13675462 synonymous_variant p.Ser60Ser
A/C 13675480 synonymous_variant p.Val54Val
A/G 13675485 synonymous_variant p.Leu53Leu
T/C 13675569 missense_variant p.Thr25Ala
C/T 13675573 synonymous_variant p.Glu23Glu
A/G 13675588 synonymous_variant p.Leu18Leu
A/G 13675605 missense_variant p.Phe13Leu
C/T 13675606 missense_variant p.Met12Ile
T/G 13675608 missense_variant p.Met12Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01062.1
MQNTRGFSMLRMFLFAILFFIIECTRGELSESESFFNFLRAVDPQNVLNKTTLVGSPSHSCLVKLNGVRCDSNATSIVHIKLENLNLSGTIDADSLCRLKKLRVVSLANNSIRGTIPPSILHCTRLTHLNLTSNQLSGRLSKALTKLKHLRNLDISNNNFSGMIPSKQQYRRLVTYHVTPNVKLESNSTKEGLKESDKNTMQQPIPDSLSDSVPDKATRSKKGTETLVVLLLGTVVLFSSVYFVVRKTLDLTERREVVKENHDVSKAPSKEVQEVNQKEGDSKLVFFVEDRERFTMEDLLRANADLRSEGFCSSLYKVKLENNDHYAVKRLKNLQVSLEEFGETLRKISNLKHQNILPLVGYRSTSEEKFVIYKYQNNGSLLNLLKDYIAGRKDFPWKLRLNIACGIARGLAFMYRKSDEKEEVIPHGNLKPSNILLDENNEPLISEHGLSKFMDPNRGFLFSSQGYTAPEKSLTEKGDVYSFGMILLELLTGKSIEVSRIDLARWVRSIVREEWTGEVFDKEVRENEHQWAFPLLNIALLCVSRFQETRPTTLEILQKIEEVMDQHEQYQERFASKCCSSGSNRDECCSLHKIIPETWDSPGSNY*


CDS Sequence:
>Vu_01062.1
ATGCAGAACACAAGAGGTTTTTCTATGTTGAGGATGTTTCTCTTTGCTATCCTTTTCTTTATCATAGAGTGTACAAGAGGTGAGTTATCAGAATCTGAGTCTTTCTTCAATTTCCTGAGAGCAGTTGATCCCCAAAACGTGCTTAACAAAACTACCTTGGTTGGATCACCATCACATTCGTGCTTGGTCAAGTTGAATGGTGTAAGATGTGACTCAAATGCTACTAGTATTGTACATATAAAGCTTGAGAACTTGAACCTCAGTGGCACAATTGATGCAGATTCACTATGCAGGCTCAAAAAGTTAAGAGTGGTGAGCTTGGCTAACAACAGCATCAGAGGAACCATTCCACCTTCGATTTTGCATTGTACAAGGTTGACACATTTGAATTTAACCAGCAATCAATTGAGTGGGAGGTTGTCAAAGGCCTTAACAAAATTGAAACATCTTAGGAACTTAGACATCTCCAATAACAACTTTTCTGGTATGATCCCAAGTAAACAACAATATAGGCGATTGGTTACTTATCATGTGACACCAAATGTTAAGTTGGAAAGCAATAGTACCAAAGAGGGGCTAAAAGAAAGTGACAAAAACACAATGCAGCAACCGATACCAGATTCTTTATCAGACAGTGTTCCTGATAAAGCCACAAGGTCAAAGAAAGGGACAGAAACTTTGGTGGTGTTACTTTTGGGCACTGTGGTGCTTTTTTCATCCGTTTACTTTGTGGTAAGAAAGACATTAGATTTAACTGAAAGGAGAGAGGTAGTTAAAGAGAATCATGATGTGTCAAAGGCTCCGTCTAAAGAAGTTCAAGAGGTGAACCAAAAGGAAGGAGATTCTAAGCTTGTTTTCTTTGTTGAAGATCGTGAAAGGTTCACAATGGAGGACCTGCTTCGAGCCAATGCTGATTTGAGGAGTGAAGGCTTTTGCAGCAGCCTTTACAAGGTGAAGCTGGAGAACAATGATCACTATGCAGTCAAAAGATTGAAGAATCTGCAGGTTTCCTTGGAAGAATTTGGTGAAACATTGAGGAAGATCAGTAACTTGAAGCATCAAAATATCCTCCCCCTTGTTGGTTATCGTTCCACCAGTGAAGAAAAATTCGTCATTTACAAATATCAGAACAATGGAAGCCTGCTTAATCTGTTAAAGGATTACATAGCAGGTAGAAAAGATTTCCCATGGAAACTGCGTCTGAATATAGCATGTGGAATTGCAAGGGGTTTAGCCTTCATGTATAGGAAGTCAGATGAGAAGGAGGAGGTCATTCCTCATGGAAATCTGAAGCCATCAAACATCCTTCTAGATGAGAACAATGAGCCACTAATAAGTGAGCATGGTTTATCAAAATTCATGGACCCAAATAGAGGTTTTCTGTTTTCCTCTCAGGGATACACAGCTCCTGAAAAGAGCCTAACAGAAAAGGGTGATGTCTACAGCTTTGGAATGATTTTGCTTGAACTGCTAACTGGAAAAAGCATAGAGGTGAGCAGAATAGACCTTGCAAGATGGGTGAGGTCCATTGTGAGGGAGGAATGGACAGGGGAAGTCTTTGACAAGGAAGTCAGGGAGAATGAGCATCAATGGGCGTTTCCTCTTCTGAACATAGCCCTCTTGTGTGTGTCACGTTTCCAAGAAACTAGGCCAACCACTCTGGAGATTTTGCAGAAGATAGAGGAGGTCATGGATCAACATGAACAATATCAGGAACGTTTTGCTTCCAAATGCTGTTCCAGTGGATCCAACCGTGATGAATGTTGTTCACTGCACAAAATCATACCTGAAACATGGGATTCTCCAGGATCAAATTATTGA


Promoter Sequence:
>Vu_01062::LG1:13675641-13677641(-)
TTTGACAAAACTAAACTTGGACAATAATTTAAGTAGGTATATGATTGTGTAATGTTGTTTTCCATTCATTTTTCTTTATCTGTATCCTTTTTTTTTCGTAATTTAAATCATTTCACTTTATTTCTATTTGTTTTTCTTATTCTTCCACTCTCCACTTTCTATATGAGATGTTTTTGTACTTGTAACAATGTTTTTGCACAGTGGAAAGTCAAAGAATGTTTTATACCGAATGATTGGTTGTCATGTGGAGCATATATATTCATGGTATGCCAGTTGCTAGTTATTCTAACCAGGTGTTTGACAGCTATTTGCCAAATTGTTAAGAAAAAGAAATCATTTTATTTTCAATTATGAAACTTTTCAAATTTTACTCCAAAAAAAGATGAAAGTTTCAAAATTTTCATTCTCTCATATTAAATATTTAAAATCAAGTAATATTGATATTAAAATTCATTTCTAAATATATATGTTATAAATATATAATAAAATAATTGAATTTTGACTGGATAAGCTTTTATGTTATTGATTGTTTGACTAATTTATTGGGACTATGATATAAAATTGTTTGAACTTATCAATGATTTCAAGTACAAATAAATACACATATATATTATTTCTTATAATACTCTTATTCTTCTTGAATAATATTATATGTAAAATTTGTCTCCTAAAAAGATAGAGTGAGTGTTAATTTTCTTTCAAAAAGTTGAAGATTGTGATCAGAATATTAAATTAAAATGTGGAATTAATTATTTTCTTTTAATTTATATTGATTTGAGGTAGAATTTTTTATGCATGGTCATGACCACAGCCACCACAAACAATGTAAAAGTTAAAAAAATGGTTTAATGTATGTAATCTACCTCTTAATCTTTTTAATCAGAAGTAAAGTATGTTATCTGTAACTTAATCTTTTTTATTCATTTCCTTTTATTTACTGTCTTCTTGTCTCGTTTTTCCCAAACACGGCCTTCTTTTCTTTCTCTTTCTGTCCCATTTATTCCTTTTATCTATTGGACATGATCATCAAATTTAAAGGAAAGAAAGCAAAATAAATAAATAAATATAAATATAGCCAAAAACATCTATGTAGGAAGACATTATGATGTCTACAAACTTTCTAATTTTAATTTTTAGTTTTGTGTGTGTGTTTTTTTTTTAAATCTTAGCCGGCACACCTAAATGTTACACAAATAAATAAAAATTATTCTTTCTTTCTATTATACGTAAAATGAATTCTATTGACCATTGTCTCTTTAATATGTTTGGAAATATTTCTTAACATTAGAATAACTCATCTAATTATTTTACCTAATAAATGATGTTTTTAGTATATTAATTTGATTCCTAACATGTTTATATGATAAAGAATTTATTATATATATATATATATGTATGTATATGTATGTATGTATGTATGTATATGTATGTATGTAGGTATATGTATGTATGTAGGTATGTATATAGAAGAGTATGTATAATGAATCTCACTCAATGAAGATATACTATTTATATCAAGTAATTATTTACATATCATGTCTTTATTATCTGTCAATCGTAAAATTTTGTATAAATAATGTTTCTGTTTATGAGATCCATTTATACAATTGCCAAAATTCATATAAAAACTGTTTCAATATATAGTAGTTTAAATTTAAAACTCGAATTGTTTTTAGTTAAAATCTCAAACTAAACACAATGGAAATTTTAGAAGTGTCTGTAAAATCACCTCCTAATAAATTCTAAGGATAAATATGCTTCAGACAAGATTTATTCTGATATCTTGGACTTTTGCTGTAAATTTCAATATACGTCCATTCATCAATTTTAATTTTATAGATTGCAAAAATAGTTATTAACGAGTGCAGCGATGAGTTCAAGTAATACAAGTATCTATCGGTAGCTTCTATGAAGAGATATGTCGTTATCCAATGCACAAATAGAGAAGCATGCAGCAGTAGCACCATTCATTTTGACAGCAGATAAAGAAGAAGCTGAAA


Gene Sequence:
>Vu_01062(-)
ATGCAGAACACAAGAGGTTTTTCTATGTTGAGGATGTTTCTCTTTGCTATCCTTTTCTTTATCATAGAGTGTACAAGAGGTGAGTTATCAGAATCTGAGTCTTTCTTCAATTTCCTGAGAGCAGTTGATCCCCAAAACGTGCTTAACAAAACTACCTTGGTTGGATCACCATCACATTCGTGCTTGGTCAAGTTGAATGGTGTAAGATGTGACTCAAATGCTACTAGTATTGTACATATAAAGCTTGAGAACTTGAACCTCAGTGGCACAATTGATGCAGATTCACTATGCAGGCTCAAAAAGTTAAGAGTGGTGAGCTTGGCTAACAACAGCATCAGAGGAACCATTCCACCTTCGATTTTGCATTGTACAAGGTTGACACATTTGAATTTAACCAGCAATCAATTGAGTGGGAGGTTGTCAAAGGCCTTAACAAAATTGAAACATCTTAGGAACTTAGACATCTCCAATAACAACTTTTCTGGTATGATCCCAAGTAAACAACAATATAGGCGATTGGTTACTTATCATGTGACACCAAATGTTAAGTTGGAAAGCAATAGTACCAAAGAGGGGCTAAAAGAAAGTGACAAAAACACAATGCAGCAACCGATACCAGATTCTTTATCAGACAGTGTTCCTGATAAAGCCACAAGGTCAAAGAAAGGGACAGAAACTTTGGTGGTGTTACTTTTGGGCACTGTGGTGCTTTTTTCATCCGTTTACTTTGTGGTAAGAAAGACATTAGATTTAACTGAAAGGAGAGAGGTAGTTAAAGAGAATCATGATGTGTCAAAGGCTCCGTCTAAAGAAGTTCAAGAGGTGAACCAAAAGGAAGGAGATTCTAAGCTTGTTTTCTTTGTTGAAGATCGTGAAAGGTTCACAATGGAGGACCTGCTTCGAGCCAATGCTGATTTGAGGAGTGAAGGCTTTTGCAGCAGCCTTTACAAGGTGAAGCTGGAGAACAATGATCACTATGCAGTCAAAAGATTGAAGAATCTGCAGGTTTCCTTGGAAGAATTTGGTGAAACATTGAGGAAGATCAGTAACTTGAAGCATCAAAATATCCTCCCCCTTGTTGGTTATCGTTCCACCAGTGAAGAAAAATTCGTCATTTACAAATATCAGAACAATGGAAGCCTGCTTAATCTGTTAAAGGGTATGTTTAGATTAAAATTTTTCATCAGTTCCAATACTCTTTATCACTTTCTCTGTGTTCACAAAATATGTGTTGCAAGTGTAAATGTGTAAACATGTTTCTGCCTTTATCATTTGCTCAACACTTGTTGAAACCTCACATTACAACAGTAATACAAGGAACACTGATGCTAAAAAGGAGAACATTGATTATATCATGATATAAAAGTCATTCAGCAGTTAATCAATCAGTACAAATTTTGCTAATCATTGCCTTTGAAATGTATCAAAAGTGGATAAAATTTATTAACAGCACTTCATTTATTACTCTCTTAAGCATATTATATATATTACCCTCCTGATAGTAGTTAATAAAGTCATTTTAAGTAAGAATCATCTAACACAGATAATGTAACAAGTTCTTACACTCTTATCCAATCAAGCATTATATTCTACAGTAAAAGTGATGTCATTGGTAGTACAAATTATAAAAATCAAACGTTTTAAGTAACTGATTTTGCTTTTGTAGCAGATTACATAGCAGGTAGAAAAGATTTCCCATGGAAACTGCGTCTGAATATAGCATGTGGAATTGCAAGGGGTTTAGCCTTCATGTATAGGAAGTCAGATGAGAAGGAGGAGGTCATTCCTCATGGAAATCTGAAGCCATCAAACATCCTTCTAGATGAGAACAATGAGCCACTAATAAGTGAGCATGGTTTATCAAAATTCATGGACCCAAATAGAGGTTTTCTGTTTTCCTCTCAGGGATACACAGCTCCTGAAAAGAGCCTAACAGAAAAGGGTGATGTCTACAGCTTTGGAATGATTTTGCTTGAACTGCTAACTGGAAAAAGCATAGAGGTGAGCAGAATAGACCTTGCAAGATGGGTGAGGTCCATTGTGAGGGAGGAATGGACAGGGGAAGTCTTTGACAAGGAAGTCAGGGAGAATGAGCATCAATGGGCGTTTCCTCTTCTGAACATAGCCCTCTTGTGTGTGTCACGTTTCCAAGAAACTAGGCCAACCACTCTGGAGATTTTGCAGAAGATAGAGGAGGTCATGGATCAACATGAACAATATCAGGAACGTTTTGCTTCCAAATGCTGTTCCAGTGGATCCAACCGTGATGAATGTTGTTCACTGCACAAAATCATACCTGAAACATGGGATTCTCCAGGATCAAATTATTGA