Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00902 LG1 12322244 12325016 TMV resistance protein N-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response, signal transduction
Cellular Component   located in   chloroplast, chloroplast
Molecular Function   enables   ADP binding, ADP binding
SNP Position Effect Amino acid change
A/T 12322681 synonymous_variant p.Ala146Ala
G/C 12322697 missense_variant p.Glu152Gln
C/A 12322719 missense_variant p.Pro159Gln
G/T 12322991 stop_gained p.Glu250*
A/T 12323053 missense_variant p.Leu270Phe
A/C 12323056 synonymous_variant p.Thr271Thr
C/T 12323156 intron_variant
T/A 12323160 intron_variant
C/T 12323211 intron_variant
G/A 12323231 intron_variant
T/C 12323275 missense_variant&splice_region_variant p.Val282Ala
A/T 12323367 missense_variant p.Ser313Cys
A/G 12323446 missense_variant p.Lys339Arg
T/A 12323504 synonymous_variant p.Pro358Pro
A/G 12323534 synonymous_variant p.Glu368Glu
T/A 12323553 missense_variant p.Cys375Ser
G/A 12323554 missense_variant p.Cys375Tyr
T/C 12323559 synonymous_variant p.Leu377Leu
A/G 12323561 synonymous_variant p.Leu377Leu
A/C 12323734 missense_variant p.Asn435Thr
G/A 12323825 synonymous_variant p.Leu465Leu
T/C 12323833 missense_variant p.Ile468Thr
G/C 12323843 missense_variant p.Lys471Asn
G/T 12323846 synonymous_variant p.Thr472Thr
A/G 12323861 synonymous_variant p.Gln477Gln
G/A 12323878 missense_variant p.Gly483Glu
G/T 12323881 missense_variant p.Gly484Val
A/G,T 12323889 missense_variant p.Ser487Gly
C/T 12323892 missense_variant p.His488Tyr
T/A 12323901 missense_variant p.Cys491Ser
A/G 12323904 missense_variant p.Ile492Val
C/A,G 12323906 missense_variant p.Ile492Met
G/T 12323908 missense_variant p.Arg493Leu
A/G 12323910 missense_variant p.Met494Val
G/C 12323913 missense_variant p.Ala495Pro
C/T 12323914 missense_variant p.Ala495Val
A/C 12323925 missense_variant p.Ile499Leu
G/A 12323942 synonymous_variant p.Glu504Glu
T/A 12323945 missense_variant p.Asp505Glu
A/G 12323950 missense_variant p.Glu507Gly
A/G,* 12323962 missense_variant p.Asn511Ser
C/G 12323999 stop_gained p.Tyr523*
G/T 12324011 synonymous_variant p.Leu527Leu
T/A 12324021 missense_variant p.Leu531Ile
A/G 12324023 synonymous_variant p.Leu531Leu
G/A 12324075 missense_variant p.Val549Ile
G/A 12324078 missense_variant p.Val550Ile
A/G 12324080 synonymous_variant p.Val550Val
A/T 12324082 missense_variant p.Gln551Leu
A/G 12324084 missense_variant p.Lys552Glu
C/A 12324087 missense_variant p.His553Asn
T/A 12324089 missense_variant p.His553Gln
T/C 12324090 missense_variant p.Ser554Pro
C/T 12324094 missense_variant p.Ala555Val
T/C 12324116 synonymous_variant p.Asn562Asn
A/C 12324361 missense_variant p.Asn644Thr
G/*,A 12324379 missense_variant p.Gly650Asp
G/C 12324399 missense_variant p.Ala657Pro
G/A 12324412 missense_variant p.Gly661Glu
C/T 12324442 missense_variant p.Thr671Met
C/A 12324445 missense_variant p.Thr672Asn
A/G 12324454 missense_variant p.Tyr675Cys
A/G 12324466 missense_variant p.Lys679Arg
C/G 12324479 synonymous_variant p.Leu683Leu
A/C 12324497 missense_variant p.Glu689Asp
G/A 12324544 missense_variant p.Gly705Glu
A/C 12324546 missense_variant p.Ile706Leu
T/A 12324551 missense_variant p.Phe707Leu
G/T 12324552 missense_variant p.Val708Leu
C/T 12324559 missense_variant p.Pro710Leu
C/G 12324560 synonymous_variant p.Pro710Pro
G/A 12324590 synonymous_variant p.Leu720Leu
G/A 12324603 missense_variant p.Val725Met
G/C 12324623 missense_variant p.Glu731Asp
G/A 12324656 synonymous_variant p.Lys742Lys
G/A 12324659 synonymous_variant p.Gln743Gln
T/C 12324682 missense_variant p.Val751Ala
T/C 12324685 missense_variant p.Met752Thr
G/T 12324710 missense_variant p.Lys760Asn
G/A 12324713 synonymous_variant p.Glu761Glu
C/G 12324720 missense_variant p.Gln764Glu
A/G 12324723 missense_variant p.Thr765Ala
C/G 12324744 missense_variant p.Gln772Glu
A/G 12324745 missense_variant p.Gln772Arg
C/A 12324747 missense_variant p.Leu773Ile
T/C 12324755 synonymous_variant p.Asp775Asp
G/C 12324756 missense_variant p.Gly776Arg
T/C 12324784 missense_variant p.Val785Ala
G/T 12324793 missense_variant p.Arg788Ile
C/G 12324804 missense_variant p.Arg792Gly
G/T 12324805 missense_variant p.Arg792Leu
G/T 12324811 missense_variant p.Gly794Val
G/C,A 12324816 missense_variant p.Gly796Arg
A/G 12324821 synonymous_variant p.Lys797Lys
T/C 12324839 synonymous_variant p.Gly803Gly
G/A 12324904 missense_variant p.Arg825Lys
T/C 12324923 synonymous_variant p.Asp831Asp
G/A 12324926 synonymous_variant p.Val832Val
G/T 12324956 missense_variant p.Arg842Ser
C/A 12324958 missense_variant p.Ala843Glu
A/T 12324959 synonymous_variant p.Ala843Ala
C/A 12324963 missense_variant p.Leu845Ile
T/G,C 12324968 synonymous_variant p.Leu846Leu
G/A 12324969 missense_variant p.Glu847Lys
A/T,* 12324988 missense_variant p.His853Leu
T/A 12324992 missense_variant p.Asn854Lys
C/T 12325000 missense_variant p.Thr857Ile
T/C 12325003 missense_variant p.Leu858Pro
G/A 12325004 synonymous_variant p.Leu858Leu
G/A 12325009 missense_variant p.Arg860Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00902.1
MDFSYNQRIMEIPDVSELQNLRELRLDHCRNLIAVHQSVGFLKRLSHLSVSECTKLQNFLSRMFLPSLEVFDLNLCERVGHFPEIMQEMTKPLKIYMINTGIQELPESISKLIGLVFIDISNNRQLKYLPSSLFMLPNVDSFKIEACSKLGESFRSLVPHPSEAIVRPKLRSLNFQKGNLSDEDLLAIICYFPKLEELIVSENNFVCIPSCINECGDLTSLDLNGCKKLKKIPELTGLRILDVHHCFYLEEISELPSTVRKVDARFCFKLTKETSDMLWCQVKKRVGGIEMVMPFITEIPEWFHFVGVGRIPSFWIRGKFPNIVLAMIFHFQNESERNKFVRRRLVDLRLLINGRNAPGKGYQDFEIEAEHILICDLRVLFSEKEWFGLDAFVENEWNLVQVEYEASSSLMISGWGAFVYDEGSNMKDVAFTCPNPMYSDKKPPTITPEKDPMEKYKKRIRELRLDEIFKKTLTEWQENKERGGDRSHDDCIRMALGQIKKISEDAEDALNSKGSALEDPNSYLRWLLDTLENDDGKPKEIIKGDLALVVQKHSATGKKKDNVGEASCSRHHGRKEEEEGYDPVVEAPSIPFYTSVVREQRVNDSIEGDLPEDIVMELFCEGMRDGLVEAQNKFPSLDIAESSNAVLEKGYKVRWAAEVEGQISVEDRIYTTGIYSGLKEAKLRFPDLEMWATINTVAKRKGIEGIFVSPSQENLEFPHLDWSTVKVPPSEDPLMQIFMRMKQQSNFEGEVMSKLFWKLKEEHQTLRNKFAQLDDGNENEYDECVEKREEKRDGVGKYEEISGVLRGRGEEIERLYEAGVEGFKRSEEFEDVMGAIYLNGLRAGLLEAHALLHNLLTLHRN*


CDS Sequence:
>Vu_00902.1
ATGGACTTTTCATATAACCAACGTATCATGGAAATACCTGATGTGTCCGAACTTCAGAATCTAAGAGAACTGAGACTTGATCATTGTAGAAACCTAATTGCAGTCCATCAATCTGTTGGATTTCTGAAAAGGCTTTCTCATTTAAGTGTTTCAGAATGCACAAAACTTCAAAATTTCCTGTCCAGAATGTTTCTACCATCTTTAGAAGTCTTTGATCTTAATCTATGTGAAAGAGTTGGTCACTTCCCAGAGATAATGCAAGAAATGACAAAGCCATTGAAGATTTATATGATAAATACGGGTATTCAAGAGCTTCCAGAATCCATTAGTAAACTTATTGGGCTTGTTTTTATAGACATATCCAATAACAGGCAACTTAAATATCTGCCAAGCAGCTTATTCATGTTGCCAAATGTTGATTCCTTCAAAATCGAAGCATGTTCGAAACTTGGAGAATCCTTCAGAAGTTTGGTGCCACACCCTTCAGAAGCAATTGTTCGTCCGAAATTACGATCACTGAATTTCCAAAAGGGTAACTTGTCTGATGAAGATCTTCTTGCGATTATTTGCTACTTTCCGAAATTAGAAGAATTGATTGTTTCAGAGAACAATTTTGTATGTATCCCTTCATGCATCAATGAATGTGGTGACTTGACAAGTCTCGATTTGAATGGATGTAAGAAGCTTAAAAAAATTCCAGAACTCACTGGCTTGAGAATTCTTGATGTTCATCATTGTTTCTACCTTGAAGAAATTTCAGAGTTGCCGTCTACTGTTCGGAAAGTAGATGCAAGATTTTGTTTCAAGTTAACAAAAGAGACATCAGACATGCTATGGTGTCAGGTGAAGAAAAGGGTTGGTGGAATAGAAATGGTGATGCCATTTATAACTGAGATTCCAGAATGGTTTCACTTTGTGGGGGTGGGAAGGATTCCTAGTTTCTGGATTCGTGGCAAGTTCCCTAACATTGTTCTAGCCATGATCTTCCACTTCCAAAATGAGAGTGAAAGGAACAAATTCGTTCGCCGTCGCCTTGTTGATCTTCGTTTACTTATCAACGGTCGAAATGCTCCTGGCAAAGGGTACCAGGACTTCGAAATTGAAGCAGAACACATCTTGATCTGTGATTTACGAGTTTTGTTCAGTGAGAAGGAGTGGTTTGGGCTTGATGCATTTGTGGAGAATGAGTGGAATCTGGTACAGGTTGAGTATGAAGCCAGTTCGTCGTTGATGATAAGTGGTTGGGGAGCGTTTGTGTATGATGAAGGAAGCAACATGAAAGATGTCGCATTTACTTGTCCGAATCCCATGTATTCAGACAAGAAACCACCGACAATAACTCCTGAGAAAGATCCTATGGAGAAGTATAAAAAGAGGATACGGGAGCTACGTCTGGACGAAATATTTAAGAAGACGTTGACGGAATGGCAAGAGAACAAAGAAAGAGGAGGGGACAGGAGTCATGACGATTGCATCCGTATGGCATTGGGACAAATAAAGAAGATATCAGAGGATGCTGAGGATGCATTGAATTCAAAAGGGTCAGCTTTAGAAGATCCAAACTCCTACCTGAGGTGGCTGCTAGATACGTTAGAAAATGATGATGGAAAGCCTAAAGAGATTATCAAAGGTGATCTGGCGTTGGTAGTACAAAAGCATTCAGCGACAGGGAAGAAGAAGGATAATGTAGGAGAAGCTTCATGCTCTAGGCATCACGGAAGAAAGGAGGAGGAAGAAGGGTACGATCCTGTGGTGGAAGCCCCAAGTATCCCTTTTTATACTTCAGTAGTCAGAGAACAAAGAGTAAACGATTCTATAGAGGGAGATCTGCCGGAGGACATAGTGATGGAATTATTCTGTGAAGGAATGAGGGATGGACTTGTTGAGGCACAGAATAAATTTCCTTCTCTAGATATTGCTGAAAGCAGTAACGCTGTGTTGGAGAAGGGTTATAAGGTTAGATGGGCAGCTGAAGTAGAAGGGCAAATATCGGTTGAAGATAGGATATACACGACTGGAATTTACTCTGGACTCAAAGAAGCAAAGCTCAGGTTTCCTGATTTGGAAATGTGGGCAACAATAAATACTGTGGCAAAAAGGAAAGGGATCGAAGGAATTTTTGTATCACCCTCTCAAGAAAACCTGGAGTTTCCACATTTGGATTGGAGTACAGTGAAAGTTCCTCCTTCTGAGGACCCTCTGATGCAAATATTCATGAGGATGAAGCAGCAAAGTAATTTTGAAGGCGAGGTGATGAGTAAACTGTTCTGGAAGTTGAAGGAGGAACACCAAACTCTGCGCAACAAATTTGCACAACTTGATGATGGAAATGAAAATGAATATGATGAGTGTGTTGAGAAGAGAGAAGAGAAGCGTGATGGTGTGGGAAAATATGAAGAGATAAGTGGTGTTTTGAGAGGAAGAGGTGAAGAAATAGAGAGGCTGTACGAAGCTGGGGTTGAAGGATTCAAGAGATCAGAAGAGTTTGAAGATGTGATGGGTGCAATATACTTGAATGGACTGAGGGCAGGACTCCTTGAAGCACATGCTCTCTTACATAATCTCCTTACTCTGCACAGAAACTGA


Promoter Sequence:
>Vu_00902::LG1:12320244-12322244(+)
TGTACATCCCTCAGATATACGGAAATTGAGAAATAGTTTCGGAAAACACATGAGAGCACACGAAAATGAGATTGGAAAAGAGTCGCTGAGAATGCAGGTTTGGAGGTCTGCTTTGTCTGAAGCAGTTAATTAGCCGGGGATGCATGTTACCACCGGGTATGTACCTCAGTTATTCCATTACAAAACCATTCAATCTTATTTCTAACTTTTCTAGCTTCAAATTGTGTATTCATAACGGGTAATCATTATTGTTTTGAGCTACTGATTATTAATATCAATGGTTATTATCTAGTACAATACAATGCTTAGTTTTTAACAAAAGAGATACTGATATCAAACAAATAAATTAATACATTCTGCTCCTATAGGTATGAAAACAATTTTATTGAAAAAATTGTTAAGAAGGTTCGTAAAAGTATAGCTCCTAAGCCTTTATCTACCGGTGAAAATCTTGTTGGACTGGAGCCCCACATAGAAGAGGTTATGTCACTTTTGGACATGAATAATGACAAAGCTGTAACGATGTTGGGCATATATGGACTTGGTGGAATTGGAAAAACGGAACTTGCCAAAGCTTTGTATGACAAAGTTGTGCAAAACTTTGGTGCCGCAAGTTTTCTTGCCGGTGTTAGAGAAAAAGCAAACACAATCAATGGCATGGAAGAACTGCAAAAGACACTTTTATCTGAGATGTTAGAGGAGTCGGAAACTAAGTTGGGAAGTACCGATAAAGGAATTTATGAAATAAAACGAAAGCTTCGCCGAAAGAAAGTTCTTTTGGTTCTTGACGACGTTGATGATAAAGAAGAGTTAGAAAAGTTGGCAGGAGGGTGTGATTGGTTTGGTCCAGGTAGTAGGATTATTATAACGACAAGGGAAAAAGATGTCCTGATTGCTCACCATGTTGGAAATATTTATGAAATGAAGGAACTTGATGAACATCATTCTTTGGAGCTCTTTTGTTGGAATGCCTTCGGACAAGGCTGTCCTAAAACAGGTTTTCAAGATGTGTCCGTGCGTGCTGTAGATTACGCCAAAGGTCTTCCACTGGCTTTAAAAGTGATAGGCTCTGACTTAGCTACTCTTCATGAAGAAAGTTTAGATGCCTGGGAAGATGCATTGGAAGAATATGAGAAGACTCCTCCGAATAAAAAGATTCAAGATGTGCTTAAAATAAGCTACGATAGATTGGATGATGATGCCAAACAAGTTTTCTTGGACATAGCTTGCTTCTTTAAAGGGGAGAGAATGAAATATGTGAAAAAGATACTTAAGGAATTTTGTTCAACATCCAACATGAAAGTACTTGTCAATAAATCACTCATAACTGTCGAGAATGACAGGCTGAAGATGCATGATCTAATACAAGATATGGGTAGACAGATTGTTAGGCAGGAAGCACCAGATAATCCTGGAGAACGTAGCAGAATATGGGATTATGAAGATGTCATTGAAATACTAACAGAAGATTCAGTAATCGTCTACTTTTTTACTCTGTTTTTTTATTTATACATTATAGTATTTTATATTAATGATAATATGCAATTGATATGTTGGTTCTTTGTACTCGTGTTAAAGGGAAGTGATAAGATTCAAGGGATTAAGCTAGATCCTCCTAAGCAAGCAGAAGTAATATGGAGTGGAACTGAGTTTGGGAAAATGAAATGGCTCAGAATTCTCATTGTTCGAAACACATCATTTTCATCTGAACTTCAACATTTACCAAATCATTTAAGACTACTTGACTGGGATAACTATCCTTCAAAGTCTTTCCCCCAAAAATTCCATCCAAAGAAGATCGTTGTTTTCAATTTGCCTAGAAGTTGTTTAACATTCAAAGAGCCATTCAAGGTACAATTCTGTAACATATTTTCCTACTTTTTCCGTTTCAATTTTTTCATTCACGTTAATAAGGTAATAATTCAACATGCTGCAAATGATTGTTTTTTTTTTATTATTGACATTTTGTATTTGGCAGAAATTTCCATGCTTGAGTAATA


Gene Sequence:
>Vu_00902(+)
ATGGACTTTTCATATAACCAACGTATCATGGAAATACCTGATGTGTCCGAACTTCAGAATCTAAGAGAACTGAGACTTGATCATTGTAGAAACCTAATTGCAGTCCATCAATCTGTTGGATTTCTGAAAAGGCTTTCTCATTTAAGTGTTTCAGAATGCACAAAACTTCAAAATTTCCTGTCCAGAATGTTTCTACCATCTTTAGAAGTCTTTGATCTTAATCTATGTGAAAGAGTTGGTCACTTCCCAGAGATAATGCAAGAAATGACAAAGCCATTGAAGATTTATATGATAAATACGGGTATTCAAGAGCTTCCAGAATCCATTAGTAAACTTATTGGGCTTGTTTTTATAGACATATCCAATAACAGGCAACTTAAATATCTGCCAAGCAGCTTATTCATGTTGCCAAATGTTGATTCCTTCAAAATCGAAGCATGTTCGAAACTTGGAGAATCCTTCAGAAGTTTGGTGCCACACCCTTCAGAAGCAATTGTTCGTCCGAAATTACGATCACTGAATTTCCAAAAGGGTAACTTGTCTGATGAAGATCTTCTTGCGATTATTTGCTACTTTCCGAAATTAGAAGAATTGATTGTTTCAGAGAACAATTTTGTATGTATCCCTTCATGCATCAATGAATGTGGTGACTTGACAAGTCTCGATTTGAATGGATGTAAGAAGCTTAAAAAAATTCCAGAACTCACTGGCTTGAGAATTCTTGATGTTCATCATTGTTTCTACCTTGAAGAAATTTCAGAGTTGCCGTCTACTGTTCGGAAAGTAGATGCAAGATTTTGTTTCAAGTTAACAAAAGAGACATCAGACATGCTATGGTGTCAGGTATCATACTTGTTTTAAATGTACTTAGATATTTATTCCTCTTTTACAACTTCCGGTGTCTTTGATATGCATGTAATATTAGATTTTGCTTGGAATAACTTGTATATAGTGATAGTCATATAAGCGGATAACATTTATTATAATGCACATAGAAGTGACAATTGAAACTGTTACAATATTATGATAGGTGAAGAAAAGGGTTGGTGGAATAGAAATGGTGATGCCATTTATAACTGAGATTCCAGAATGGTTTCACTTTGTGGGGGTGGGAAGGATTCCTAGTTTCTGGATTCGTGGCAAGTTCCCTAACATTGTTCTAGCCATGATCTTCCACTTCCAAAATGAGAGTGAAAGGAACAAATTCGTTCGCCGTCGCCTTGTTGATCTTCGTTTACTTATCAACGGTCGAAATGCTCCTGGCAAAGGGTACCAGGACTTCGAAATTGAAGCAGAACACATCTTGATCTGTGATTTACGAGTTTTGTTCAGTGAGAAGGAGTGGTTTGGGCTTGATGCATTTGTGGAGAATGAGTGGAATCTGGTACAGGTTGAGTATGAAGCCAGTTCGTCGTTGATGATAAGTGGTTGGGGAGCGTTTGTGTATGATGAAGGAAGCAACATGAAAGATGTCGCATTTACTTGTCCGAATCCCATGTATTCAGACAAGAAACCACCGACAATAACTCCTGAGAAAGATCCTATGGAGAAGTATAAAAAGAGGATACGGGAGCTACGTCTGGACGAAATATTTAAGAAGACGTTGACGGAATGGCAAGAGAACAAAGAAAGAGGAGGGGACAGGAGTCATGACGATTGCATCCGTATGGCATTGGGACAAATAAAGAAGATATCAGAGGATGCTGAGGATGCATTGAATTCAAAAGGGTCAGCTTTAGAAGATCCAAACTCCTACCTGAGGTGGCTGCTAGATACGTTAGAAAATGATGATGGAAAGCCTAAAGAGATTATCAAAGGTGATCTGGCGTTGGTAGTACAAAAGCATTCAGCGACAGGGAAGAAGAAGGATAATGTAGGAGAAGCTTCATGCTCTAGGCATCACGGAAGAAAGGAGGAGGAAGAAGGGTACGATCCTGTGGTGGAAGCCCCAAGTATCCCTTTTTATACTTCAGTAGTCAGAGAACAAAGAGTAAACGATTCTATAGAGGGAGATCTGCCGGAGGACATAGTGATGGAATTATTCTGTGAAGGAATGAGGGATGGACTTGTTGAGGCACAGAATAAATTTCCTTCTCTAGATATTGCTGAAAGCAGTAACGCTGTGTTGGAGAAGGGTTATAAGGTTAGATGGGCAGCTGAAGTAGAAGGGCAAATATCGGTTGAAGATAGGATATACACGACTGGAATTTACTCTGGACTCAAAGAAGCAAAGCTCAGGTTTCCTGATTTGGAAATGTGGGCAACAATAAATACTGTGGCAAAAAGGAAAGGGATCGAAGGAATTTTTGTATCACCCTCTCAAGAAAACCTGGAGTTTCCACATTTGGATTGGAGTACAGTGAAAGTTCCTCCTTCTGAGGACCCTCTGATGCAAATATTCATGAGGATGAAGCAGCAAAGTAATTTTGAAGGCGAGGTGATGAGTAAACTGTTCTGGAAGTTGAAGGAGGAACACCAAACTCTGCGCAACAAATTTGCACAACTTGATGATGGAAATGAAAATGAATATGATGAGTGTGTTGAGAAGAGAGAAGAGAAGCGTGATGGTGTGGGAAAATATGAAGAGATAAGTGGTGTTTTGAGAGGAAGAGGTGAAGAAATAGAGAGGCTGTACGAAGCTGGGGTTGAAGGATTCAAGAGATCAGAAGAGTTTGAAGATGTGATGGGTGCAATATACTTGAATGGACTGAGGGCAGGACTCCTTGAAGCACATGCTCTCTTACATAATCTCCTTACTCTGCACAGAAACTGA