Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00808 LG1 11402030 11403586 PREDICTED: myb-like protein Q
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, microgametogenesis, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 11402045 missense_variant p.Leu448Pro
T/A 11402058 missense_variant p.Met444Leu
A/G 11402069 missense_variant p.Met440Thr
A/T,C 11402089 missense_variant p.Phe433Leu
T/A 11402108 missense_variant p.Lys427Met
C/G 11402110 missense_variant p.Lys426Asn
T/A 11402116 missense_variant p.Lys424Asn
A/C 11402134 synonymous_variant p.Pro418Pro
C/A 11402169 missense_variant p.Gly407Trp
T/G 11402193 missense_variant p.Asn399His
G/C 11402219 missense_variant p.Ser390Cys
A/C 11402224 missense_variant p.Ser388Arg
T/C 11402292 missense_variant p.Arg366Gly
T/C 11402299 stop_retained_variant p.Ter363Ter
A/C 11402360 missense_variant p.Leu343Arg
T/A 11402395 synonymous_variant p.Arg331Arg
C/A 11402396 missense_variant p.Arg331Leu
T/A,* 11402409 missense_variant p.Arg327Trp
G/A 11402433 downstream_gene_variant
G/C 11402454 downstream_gene_variant
T/C 11402496 downstream_gene_variant
C/G 11402522 splice_donor_variant&intron_variant
A/G 11402536 missense_variant p.Ser319Pro
C/G 11402560 missense_variant p.Glu311Gln
T/C 11402574 missense_variant p.Glu306Gly
A/G 11402598 missense_variant p.Met298Thr
C/T 11402611 missense_variant p.Val294Ile
G/T,* 11402622 missense_variant p.Ala290Glu
C/G 11402641 missense_variant p.Glu284Gln
T/C 11402690 synonymous_variant p.Ser267Ser
T/A 11402708 missense_variant p.Gln261His
C/A 11402755 missense_variant p.Gly246Cys
T/C 11402764 missense_variant p.Lys243Glu
A/T 11402766 missense_variant p.Met242Lys
C/T 11402772 missense_variant p.Gly240Glu
G/T 11402776 missense_variant p.Arg239Ser
C/T 11402779 missense_variant p.Val238Ile
T/A 11402787 missense_variant p.Asn235Ile
G/A 11402800 missense_variant p.Pro231Ser
A/T 11402810 synonymous_variant p.Thr227Thr
C/T 11402815 missense_variant p.Asp226Asn
G/T 11402836 missense_variant p.Leu219Met
A/G 11402839 missense_variant p.Tyr218His
C/G 11402883 missense_variant p.Arg203Pro
T/C 11402890 missense_variant p.Ile201Val
T/C 11402891 synonymous_variant p.Glu200Glu
A/G 11402896 missense_variant p.Ser199Pro
C/T 11402897 synonymous_variant p.Pro198Pro
T/G 11402907 missense_variant p.Glu195Ala
T/A 11402919 missense_variant p.Lys191Ile
G/A 11402959 missense_variant p.Leu178Phe
T/A 11402963 missense_variant p.Gln176His
A/C 11402979 missense_variant p.Leu171Arg
C/T 11403025 missense_variant p.Glu156Lys
C/G 11403030 missense_variant p.Arg154Pro
T/G 11403052 missense_variant p.Thr147Pro
T/C 11403058 missense_variant p.Asn145Asp
G/A 11403076 missense_variant p.Leu139Phe
G/A,* 11403100 missense_variant p.His131Tyr
C/T 11403117 missense_variant p.Arg125Gln
T/C 11403123 missense_variant p.Lys123Arg
A/G 11403209 downstream_gene_variant
A/T 11403213 downstream_gene_variant
A/T 11403232 downstream_gene_variant
C/T 11403238 downstream_gene_variant
T/A 11403252 downstream_gene_variant
C/T 11403313 missense_variant p.Val92Met
G/C 11403335 missense_variant p.Ser84Arg
C/T 11403336 missense_variant p.Ser84Asn
C/G 11403351 missense_variant p.Ser79Thr
G/A 11403357 missense_variant p.Ala77Val
A/G 11403416 synonymous_variant p.Cys57Cys
G/A 11403467 synonymous_variant p.His40His
G/C 11403474 missense_variant p.Thr38Arg
T/G 11403504 missense_variant p.Glu28Ala
G/T 11403509 synonymous_variant p.Thr26Thr
C/G 11403565 missense_variant p.Asp8His
G/C 11403568 missense_variant p.Gln7Glu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00808.1
MSSFSNQDQSNDNQSQENNLRKGPWTAEEDAILAEYVTKHGPGNWNIVQQNTGLLRCGKSCRLRWTNHLRPDLRRGAFSKEEQSKVIQLHAVMGNKWAKMAQELPGRTDNEIKNFWNTRLKKKKRVSLELHPDGIKPVLDAHNPNTTLATYTHRDEVVGTSSQHAMLNNFLNTQNQPLPVQPVSMVRENMKPPQEMQPSEIPRQLQLPEAGRSSYVPYLVFNNSSDTPNQPLQPNSMVRGNMKPSGIPQGMQLSEVPEELQRQGTSSSYVPHVVFNNYSNAPNEPLCVQAISMVRENMEPSGIPQEMQLSEVPEELQLSEADFDALQGDFANDDYACLDGLSSTSELPPLPSCHDLTFEESMIMRENSQAETNQYYVPRSPRSNGYLESIFYPPKVSQEQDDFSMQGELNMRNATEISYQRKPENEEVLGDLIWPENQHDDALYGYRSFLKP*


CDS Sequence:
>Vu_00808.1
ATGTCTTCGTTCTCAAATCAGGATCAAAGTAATGATAATCAGTCACAGGAAAATAATCTAAGGAAAGGGCCATGGACCGCAGAAGAAGATGCAATACTGGCAGAATATGTGACAAAACACGGACCAGGAAATTGGAACATAGTGCAGCAAAACACTGGACTACTTCGTTGTGGGAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGATCTAAGGAGAGGTGCATTCAGCAAAGAAGAACAAAGCAAAGTCATTCAGTTACATGCGGTGATGGGAAATAAATGGGCTAAAATGGCACAGGAGTTGCCTGGACGAACAGACAATGAAATCAAGAACTTTTGGAACACTAGACTGAAGAAAAAGAAACGAGTTAGCTTAGAACTCCACCCAGATGGCATAAAACCTGTGCTTGATGCCCACAACCCAAACACTACTCTAGCTACCTACACTCATCGTGACGAAGTAGTAGGGACATCATCTCAACATGCCATGTTAAATAATTTCCTTAACACTCAAAATCAACCACTCCCTGTACAACCAGTTTCTATGGTACGTGAAAACATGAAACCACCTCAAGAAATGCAACCGTCTGAAATACCTCGGCAACTACAACTACCTGAAGCAGGTAGATCATCTTATGTACCATATCTGGTGTTCAACAATTCCAGTGACACTCCAAATCAACCACTGCAACCAAATTCTATGGTACGTGGAAACATGAAACCGTCTGGCATACCTCAAGGAATGCAACTGTCTGAGGTGCCTGAAGAACTACAACGACAAGGTACATCATCATCTTATGTACCACATGTGGTGTTCAACAATTATAGTAACGCTCCAAATGAACCACTGTGTGTACAAGCAATTTCTATGGTACGTGAAAACATGGAACCGTCTGGCATACCTCAAGAAATGCAACTGTCTGAGGTACCTGAGGAACTACAACTATCTGAAGCAGATTTTGATGCGTTACAGGGAGATTTCGCGAATGATGACTATGCATGTTTAGATGGCCTTTCTTCTACATCAGAGTTGCCTCCATTGCCATCATGTCATGACTTAACATTTGAAGAGTCAATGATAATGAGAGAGAATTCTCAGGCTGAGACTAACCAGTATTATGTGCCACGCTCTCCACGTAGCAATGGGTATTTGGAGTCTATCTTTTATCCACCAAAGGTTTCGCAAGAACAAGATGATTTTTCCATGCAAGGGGAGTTGAATATGAGAAATGCCACAGAAATTTCCTACCAGAGAAAACCTGAAAATGAAGAAGTTTTGGGTGACTTGATTTGGCCAGAGAATCAACATGATGATGCTTTATATGGCTATCGTTCTTTTTTGAAACCTTAA


Promoter Sequence:
>Vu_00808::LG1:11403586-11405586(-)
AAGTTACATCATGCAAAACCATGCAAATGTAGTTCTTGCAGATTAATTGCTGTGTCATGATTTAAATGCTTGAGAGTTTTGGGAATGTACAGAACAATTTTTTTTGACAGTTCATAACTGCAGGATTCAAACCGTATCAAAAACTAGTATCAGTGATTAATCATATAGGTTGAACTGCTTGGTGAAGAGAAAGGTATTTTTCTCATCAAATCTCTTAAATTTTTCTTATAATGCATGACTGTTTCTCTTAGTTATCTTTTTCTTCTTCTCTAAAACTAGATATTTATTAGACTCATAGTTTCATATATTTGTTAAATAAAATATAATGTTGTATGTGGAGATACAAATTACTACTTATAATCAAAACGAAAGAATATATATATATATATATATATATATATATATATATATATATAGCATTACGAATTTAATAATGATCCTATTAGCAAGTATGAACCTAATGGTGGACTTTTGCACGAAACTAGGCAAATTTGTCTGGAATATTACGAAAATAGACAAATTTTGGGTCAAAGAGAAGTTGTGAGGGGTCCAAACGATTTTTAATGAAGAAGTCGTGCAGAGGGCACAACTTCACACTGTTCATTTGACCAGTATTGAAGTCGTGCACCCCAAAAACGACTTTAGAACATGGTAATCGATTACCAAACACTGTAATCGATTACCACGTCTTTTTTTCCTTAAAAATAATAAAAGTATTAAAGTTGTACCGGGGGATGACGACTTTAATATGAGAAGTCGTGCACCCCCACACACTTTTACCTTTTTTAATTTTTAATTTTTTTATTAATTAAAATGATTTATAATTAATAAATAATATTTTTAAATATATTTAAAATAATATAAATTATATCTAATTAATATTTAAAAATTATATTTCATTATAATTTAATTTTATGAATTTTAATTATCATATTATACTTTTCTTTAAATTATAATTAATTAATAAAAAAATTATTATAAACTATTTAAAATAATAAAAAATTTTAAAAGTTGAAAACGTTTGGGGTTGACGACTTCTTTACTTAAAGTCGTGCACCCCTTCACACTTTTATTTCTTTAATTTTTTATTATTTAAAAAGATTTATAAGTTTTATATAATATATTTAAATGTATATAAAACATTTTAAATAAATATATTTTATGGTTTTAATTATTTTTATAATTAAATTAATTTTTTATAAAAACAAATTCCTTATAGTTTAGAATTAAAAACATATTTAACCCTAATTAATTTAATTAAATTTATTATATTAAAAAAAATTACTTATATCTCATTATAATAAATTGACTTGTAATAAATTTTTACTTAAATTTAATTTAGAATGAGTTTTTGTTATAACAAATTTATTTATATTTCATTATAATAAATTTAATTACATAATTCTTTTTTTAATTTTTAATTACATAATTACAACAATTATAGTTATAAATTATTTAATTAAAATCATTTTATAAAAAAATTAATTTAATTACAAAAATAATTAAAATTATAAAATTTATTTATTTAATAATATTAAAAAATTTAATTATTAATTAGATATAATTTTAATTATATTAAATACATTTAAAAATATTATTTACAAATTATAAATGATTTTAATTAATAAAAAATTTAAAAAATATAAAAAATAAGAATGGGAGGGGTGCACGACTTCAATAAGAGATGTCGTTAACCCCCACACAACTTTAATTTTCTATAAAAAAAATGACTTTGTAATCGATTACCATGCTCTAAAGTCGTTTTTGGATGCATGACTTTAACACTGAACAAATGAACAATGTGAAGTCGTGCAGGGGGCACGACTTCTTCATTTGAAGTCGTTTGGGGCCTACGACTTTTCCATTTTCGTAATTTGAATTGAATTTTCGTATTATGGTAATATATTTTGCCTATTTTGGTAACAAAACCCCTAATGGTGATTTCTATTTTACCATATTATATTATTTACTAACTTTGATTTCTCTATTTCATAGCAAGC


Gene Sequence:
>Vu_00808(-)
ATGTCTTCGTTCTCAAATCAGGATCAAAGTAATGATAATCAGTCACAGGAAAATAATCTAAGGAAAGGGCCATGGACCGCAGAAGAAGATGCAATACTGGCAGAATATGTGACAAAACACGGACCAGGAAATTGGAACATAGTGCAGCAAAACACTGGACTACTTCGTTGTGGGAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGATCTAAGGAGAGGTGCATTCAGCAAAGAAGAACAAAGCAAAGTCATTCAGTTACATGCGGTGATGGGAAATAAATGGGCTAAAATGGCACAGGAGGTTTGAATGTTCTTTTACTTCACATATTTTCTTTCAAAAGCACTTTTTTCTTGATCGAGTTACTTACATGTTATGTTCTTCCATGTGTTGGTTTAGTTGCCTGGACGAACAGACAATGAAATCAAGAACTTTTGGAACACTAGACTGAAGAAAAAGAAACGAGTTAGCTTAGAACTCCACCCAGATGGCATAAAACCTGTGCTTGATGCCCACAACCCAAACACTACTCTAGCTACCTACACTCATCGTGACGAAGTAGTAGGGACATCATCTCAACATGCCATGTTAAATAATTTCCTTAACACTCAAAATCAACCACTCCCTGTACAACCAGTTTCTATGGTACGTGAAAACATGAAACCACCTCAAGAAATGCAACCGTCTGAAATACCTCGGCAACTACAACTACCTGAAGCAGGTAGATCATCTTATGTACCATATCTGGTGTTCAACAATTCCAGTGACACTCCAAATCAACCACTGCAACCAAATTCTATGGTACGTGGAAACATGAAACCGTCTGGCATACCTCAAGGAATGCAACTGTCTGAGGTGCCTGAAGAACTACAACGACAAGGTACATCATCATCTTATGTACCACATGTGGTGTTCAACAATTATAGTAACGCTCCAAATGAACCACTGTGTGTACAAGCAATTTCTATGGTACGTGAAAACATGGAACCGTCTGGCATACCTCAAGAAATGCAACTGTCTGAGGTACCTGAGGAACTACAACTATCTGAAGCAGATTTGTAAGTTGTAACATTTCAATATTTTTATGATTGTTGCCTTCTTGCATTAGAGTCACTCTCCTTCATCTCAAAATAACAAGTTTTAATAACTGATAAATGCAGTGATGCGTTACAGGGAGATTTCGCGAATGATGACTATGCATGTTTAGATGGCCTTTCTTCTACATCAGAGTTGCCTCCATTGCCATCATGTCATGACTTAACATTTGAAGAGTCAATGATAATGAGAGAGAATTCTCAGGCTGAGACTAACCAGTATTATGTGCCACGCTCTCCACGTAGCAATGGGTATTTGGAGTCTATCTTTTATCCACCAAAGGTTTCGCAAGAACAAGATGATTTTTCCATGCAAGGGGAGTTGAATATGAGAAATGCCACAGAAATTTCCTACCAGAGAAAACCTGAAAATGAAGAAGTTTTGGGTGACTTGATTTGGCCAGAGAATCAACATGATGATGCTTTATATGGCTATCGTTCTTTTTTGAAACCTTAA