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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00796 LG1 11310612 11314222 "PREDICTED: protein kinase 2A, chloroplastic-like "
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Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of defense response to bacterium, protein phosphorylation, protein phosphorylation, positive regulation of defense response to bacterium, positive regulation of defense response to bacterium, protein phosphorylation
Cellular Component   located in   plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein serine/threonine kinase activity, Tat protein binding
SNP Position Effect Amino acid change
T/C 11310641 synonymous_variant p.Ala10Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00796.1
MGNSCRKPVAHVSSTSFFGGSKSRSKTKENSKSTEGKAPLKTLGSNVDKRISSNLKSFTFNELKEATKNFRQENLIGEGGFGFVYKGWIDENTYAPTRPGTGIVVAIKNLKPESFQGHREWLAEVNYLSQLHHENLVKLIGYCSDGKNRLLVYEFMHKGSLENHLFRKGVQPIPWTIRINIAVAVARGLTFLHTLDRNVIYRDLKAANILLDSDFNPKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRSVVEDEKPGFSEETLVDWARPFLSDSRRIWRIMDTRLGGQYSKRGAQAAAILALRCLNTDPKNRPTMVNVLAELEALNSSNSFPRTPKSGTENHTTKHSSHSQKSATNNNRL*


CDS Sequence:
>Vu_00796.1
ATGGGAAACAGCTGCAGAAAACCAGTGGCTCATGTGTCTTCCACAAGTTTCTTTGGAGGCTCAAAGTCTCGAAGTAAGACAAAAGAGAACTCAAAATCTACTGAAGGAAAAGCTCCTTTAAAAACTTTAGGATCAAATGTTGACAAACGTATCTCCAGTAACCTAAAGTCCTTCACCTTCAATGAACTAAAAGAGGCCACTAAGAACTTCAGGCAAGAAAACTTGATTGGAGAAGGAGGGTTTGGGTTTGTATACAAGGGATGGATAGATGAGAACACTTATGCTCCCACAAGACCAGGGACTGGAATTGTTGTGGCCATCAAAAACCTTAAACCAGAAAGTTTTCAAGGCCACAGAGAATGGCTGGCAGAAGTCAATTATCTAAGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCATAAAGGAAGTTTGGAAAATCATTTATTTAGAAAAGGTGTTCAACCTATTCCCTGGACTATCCGGATCAACATTGCAGTTGCTGTTGCAAGAGGATTAACATTTTTACATACCCTGGATAGAAATGTTATATATCGTGATTTAAAGGCAGCCAACATCCTACTTGATTCGGATTTCAACCCAAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACAGGAGACAACACTCATGTTTCAACCAGAGTTATTGGTACTCATGGTTATGCTGCACCGGAGTATGTAGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGAGTTGTGTTGTTAGAGTTACTAACAGGAAGGAGTGTAGTTGAAGATGAGAAACCTGGATTTTCGGAAGAAACACTGGTGGATTGGGCAAGGCCATTCCTGAGTGATAGCAGAAGAATTTGGAGAATCATGGACACAAGGTTAGGTGGTCAATACTCCAAGAGAGGAGCACAGGCAGCAGCAATACTTGCACTACGGTGTCTAAATACAGATCCAAAAAACAGACCAACTATGGTGAATGTGCTAGCAGAATTGGAAGCACTAAATTCCTCAAATTCATTCCCAAGAACCCCAAAATCTGGAACTGAGAATCATACAACAAAGCATTCTAGTCATTCCCAAAAATCAGCTACAAATAATAACAGACTATGA


Promoter Sequence:
>Vu_00796::LG1:11308612-11310612(+)
TTTTCTTTTTCTTGTTGATAATTAAGAATTATTTTTTTCAAAAATTAAAATATATTGCTTCTTCTTCGTAAATATTATTTTGTTTGTTTTTTAAATTGTTTCTGTTGGTAAGATCGAGGTTAAGTCTTATACAATTTCTTCTTACTCTAAACTTAAGTCACAGTTTGTTTATTAATTTTTCTTACCTCCAATCGAGTGTCACTTACAGAAAACACTTTCACACTCAAGTCAGTATTTGTCTAGTCAATTTGACAATAAATGTATAGTAAAACAAGTAACCAAATACCTGAATATTAAATATGTATTTAAAAAATTCTGTGATGAGTTTTTATTAGGGCTAATCCAATTACAGTCCACACACCAATAAGCTGAATTAAGGTCAACTTAATTATTCTTGATAGTTAATTTTATCTGTGATTGGATTGATATCTTCACCGGTCGTTTTGTTACTAGATAGTCGATCTCTCGATCATGACCGCCAGCGGTTATACATTATATAAACAATTTTTTCAATAAATAAGATTATGTGTAAAATGTATTATTGGTTCTTTTCATGACTTAGAATGTTCTTGAGACTCATTCCCACTATCAAGATCCATGGTTCACGAGGAAAAACTTGCATTCTCGTGGGAACAACACAAAAGAAGTACTAAGCAATTGTTGGAAAAATTATTTCTTTTCCCATTATTATGTATTTATTTTGAATATATAAGTTATGAAAGTTCTAAGGATTCTTTCTTGTACAGAAACTAAAAATTATTACTTTGAAAATGCATGCAATCTTGAAATTCACCAACTTGCATGTTCGTGCTTTTTGTTAGAACAACGTGCTTCGAATATGCAATTAATTCATATGGCTTTATGACAGTTTGAAATCTGATACAGTTGAAGGAAACATCGCACATGATCATCACATGTTGTTACCAAAAGACACAACACAATAACGAATTGGGACATATTTGACTGACAAAGAAAACCACGAGAAAACACACATATTATTATATATGCACATGTCTGTGTGTGAAGAAACAGAGAACTAGATGGATGAAACACTACATGGATAACTTATAATGGTTATCAAACAACATATCAAGATTTACAAATGAAAGTCACATAATATTAAAAATAAGGCAAAAATTTAGCCAATTTTTTGCTGTTGTTAAGAAGTGGATAAGTTTGTACTTATTTCTAAATTACTCATGTTTCTGATCTGCATTGTACTTCCAACATGTTTTAACAAAATACAATATCCTGTTACCAAATATGCCTTCGGCAAAGAAAATAGACCAGAAGAAAAGCATTTGAAGTTTTCAGCTATAAAAACAACAGTGCTTTGCCCGGTCAGATGGTTGGGAATATGGTAATCAAAGAGACCCGACAATAAATCTTATCATGTTCTTTTCAGTAGTTTCTTTTTTTATTTAGAAACTACAAATTAAACTAGAGATTTATTAAACTATTAACTAATTATTTACTTAGACTAGTTCATGCTTATAAATAAACTTTAATTGATAATAACATGTGCAGAAGACGCTTAAGTTCTGTAGAGATTAAGATTATACGAGTATTGCTCTAAAACGTAACATGGTTGACATTCTTTTTGCAACTCCGATGTCAGCTTGGCAACTTAAGGAAGCTGTCGTGTTGATATCACGAACATAAGAGTCAAAACGTTACCTATAATTATTAAAAAAGAAAAACAGGTGTGATGTAGAGCCTGTTGTGGGGTGCATGGCCCTTACCACACTTCAATCTTTGAAGAGTCAAAGCGAGCAAACGAGTTATGTTTGTACAGCGATTAGCAAAATTTTCCTCCCATTGACTGGGCTGTTTCCTCTGTCAGCCTTTGCTTCCACTTCTTTATCTAAGCCCATACAGTGCACATCTTCTTTTTACTTCTTCTTTCCCCCCACACAGCTTGGAGATCTTTTCATTCGCACCCTGTTCGCCATTGGTGTTGTTGTTCTCTCCTCTGATACAAAAGATTAAAACTTTGATCA


Gene Sequence:
>Vu_00796(+)
ATGGGAAACAGCTGCAGAAAACCAGTGGCTCATGTGTCTTCCACAAGTTTCTTTGGTCAGTTTTAATTTGGTTGTTTTAATCGTGTGTGTGTGTGTTTGCCCTCATTTTTCTTTAGTGCAAAATATAAATAAGCCTTGAGTTGTTTTTCTTCTGCTTTGATGCTTTGAATTTTGATATTTGTTTGTCATGGTGGATGGTTCCATTTTTGTGTCTTTGGTTTACACGGAGAGAAGAAGAAGAAGAAGGCGATGGTTTCCAAAGGGTAAGAGTTAAAACAATAGTTCACAGGCTGTAACCTGGAAGATTACTGGACTAGCTATTTTTCTATGAACCTTCTTGTTCTGTTTTCTTGTTTTTTAGTGTTCTCAAGGCCTTGGTTTCGTAGAACTGGATGGATTTTTTTGTATTTTTGTTAACTTAAATGTAAGCCTCCAGATTGTGTGGGTATTGGTATGAAAATGATGGAAATTGTGAGGTTTCTTCGCTTTGATTCAGGTTCTAAATAATGTTGGATGATTTTCGCCTTTTATTTCTTCTTAGAAGCAGTGACTGGTATGAATTAACATTCTTAGTTGCCTTTCAACTCTTTGATTTCATCTCTCTCAAAGAAGTGACAATATTTGTGTATATACATGTGTGCCAAATTAATTTATAGACAGTGTTTCAGATTAATTTACGCATAATAGTACAATCTTCTGTACAAAAATAGAGAAGTTACTGTAGTGGCTGATTGTAACTTGCATTTCATTTACTCTCAGGAGGCTCAAAGTCTCGAAGTAAGACAAAAGAGAACTCAAAATCTACTGAAGGAAAAGCTCCTTTAAAAACTTTAGGATCAAATGTTGACAAACGTATCTCCAGTAACCTAAAGTCCTTCACCTTCAATGAACTAAAAGAGGCCACTAAGAACTTCAGGCAAGAAAACTTGATTGGAGAAGGAGGGTTTGGGTTTGTATACAAGGGATGGATAGATGAGAACACTTATGCTCCCACAAGACCAGGGACTGGAATTGTTGTGGCCATCAAAAACCTTAAACCAGAAAGTTTTCAAGGCCACAGAGAATGGCTGGTATGTCCAAGTCCTACACAAACTCTTAAACTGTTGTATAACTTCTTGGTGTTGGTAAGCCTTGACTCATTTTCTGCCCATTATGTTTGCAGGCAGAAGTCAATTATCTAAGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCATAAAGGAAGTTTGGAAAATCATTTATTTAGAAGTAAGTAGTGCATTTACTCTTCAAGATATTTAGTCTGAAATGATGCATTGGGTACCATTGTACAAAGGGGTTGAAATAGGCAAGACTAAGCTTTGGATGTAGACCTAAACCTAATCTGTTCTAGTTTGAGTTTAGGCCTACCACCAAAGCTTAGTCTTGCTTATTGTATAAAGGAAGTTTGGAAAATCATTCATGCAGAGGTTGTGCATTCACTCAACATATTTAGTCTCCATTAATCCATTTGAATACTAATGTACAAAGGGGTTAGAATGAGATTAAGCCAAACTTTGGTAAACTTAAACCTGGTCTAATTCATAATTGCAAAATCTGAGTCTGATCTGATTGTCTATTATATGTCAATGTTAAAGTCATAACTTTGCTTGTTTGAACGCTCGGCTTAACCTCAAAACCTGTTTTATATAAGATCTATAAGCCTATAAGTCTAGATTGGCCTTCAAAAAATCATTATTGGTAATTATGTTTTTATATTAGTATATTGTGGCATATATTTTTATATATTATTTGTATAATGTAATGTTATATATATAACCAGACCAACCTATCAAGTCTAATAGACATTTTGCAGAGTCTCAAGAAACTTAGCCTTTATACATAAACAAGCTTTTTAAAAAGTCTAAACCTTGATTTTTAATAAGCAGTTGAGGTCTAATTCAGACCCTAACAGAACTTCTGACTTGTTTAGTATTTACACCCTTATGTTCAACATAGTTGTTTTTGAACTGAACCATAGTTTCCTCCTGATTCATAATACCTTAATTTTGGTTTTATATTTCTGCAGAAGGTGTTCAACCTATTCCCTGGACTATCCGGATCAACATTGCAGTTGCTGTTGCAAGAGGATTAACATTTTTACATACCCTGGATAGAAATGTTATATATCGTGATTTAAAGGCAGCCAACATCCTACTTGATTCGGTATTTAACACTGAAAGTTTGGCTTGTGAATTTGTGAAGAAAACAACACCTGTTGTTTGCATGTATGTCTTCATTCTGAAAGAGTAGAACTATGATATATGCAGGATTTCAACCCAAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACAGGAGACAACACTCATGTTTCAACCAGAGTTATTGGTACTCATGGTTATGCTGCACCGGAGTATGTAGCTACAGGTAAAGTAACCTTTCCATTTTTCTATACCCTTTTATGAAAAGTGTTAGGTTCTTAGCTTTTGGATGTTCGGATTGACAGTACCAAAAAAAAAAGCAAGGAACAATTGAGACACAAAAAAGATGCAATAGTACACTGTTATTACTGTTAATGAACACTTGAGACTTACTTTTATCATAAAAATTATTCCAATCTGAATGCATACTATACCAGTTTACTACACTACCGTGTGTTAGTACTTGGTAAAAGAGACCTAGCACCTAGCGTAGGCAATTTGTCAGTCACTTCTTCATGCAGGATCACAGCTTAAAATGAAGAAGCAAAATTGGCTAAATTATATGCCATTACACATAATATAAAACTAAAGGGCAAAACAGTTCATAATATTTCTTCAAAACTCTAGAGAGCCTTCTGACAAATACTAATTAGTGCTCCATGTGTTGGGTGTAGAATAAACTTAAATGTATTATCCGTTGGAGTCTTATGAATAGTTAATGTATTAACCGTTATAGTTAATGTATTAGTCATTTTTGTTTGTTTTGAGTACAACAGTAAGAAATATGTGACTCTATAAATTGCATTGTTGATTGCATGAATAGCACAATAACAACATAGGTGAATCAGTTTATTTACAAGAGAGATTTGTCTACACCATGTACTGTGATGTTATGTCCATGATTTATGAAGTTGATGAACCTATCTTTTGCTAAATATAATAACTTTGCCATTTGAATAAACAAACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGAGTTGTGTTGTTAGAGTTACTAACAGGAAGGAGTGTAGTTGAAGATGAGAAACCTGGATTTTCGGAAGAAACACTGGTGGATTGGGCAAGGCCATTCCTGAGTGATAGCAGAAGAATTTGGAGAATCATGGACACAAGGTTAGGTGGTCAATACTCCAAGAGAGGAGCACAGGCAGCAGCAATACTTGCACTACGGTGTCTAAATACAGATCCAAAAAACAGACCAACTATGGTGAATGTGCTAGCAGAATTGGAAGCACTAAATTCCTCAAATTCATTCCCAAGAACCCCAAAATCTGGAACTGAGAATCATACAACAAAGCATTCTAGTCATTCCCAAAAATCAGCTACAAATAATAACAGACTATGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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