Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00765 LG1 11006058 11010757 PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of developmental growth, regulation of reproductive process
Cellular Component   located in   nucleus
Molecular Function   enables   structural constituent of cell wall
SNP Position Effect Amino acid change
T/A 11006067 synonymous_variant p.Thr307Thr
C/T 11006071 missense_variant p.Gly306Asp
G/A 11006073 synonymous_variant p.Ser305Ser
C/T 11006074 missense_variant p.Ser305Asn
A/G 11006082 synonymous_variant p.Asn302Asn
A/C 11006089 missense_variant p.Phe300Cys
G/A 11006107 missense_variant p.Ser294Phe
C/T 11006147 missense_variant p.Val281Ile
A/G 11006150 missense_variant p.Cys280Arg
A/G 11006154 synonymous_variant p.Cys278Cys
G/A 11006186 missense_variant p.Arg268Trp
C/T 11006196 synonymous_variant p.Arg264Arg
C/T 11006207 missense_variant p.Ala261Thr
C/T 11006225 missense_variant p.Asp255Asn
G/C 11006253 synonymous_variant p.Leu245Leu
G/A 11006307 upstream_gene_variant
C/A 11006315 upstream_gene_variant
T/C 11006332 upstream_gene_variant
C/G,A 11006338 upstream_gene_variant
C/T 11006340 upstream_gene_variant
C/T 11006361 missense_variant p.Asp239Asn
A/T 11006365 synonymous_variant p.Thr237Thr
T/C 11006367 missense_variant p.Thr237Ala
T/G 11006380 synonymous_variant p.Gly232Gly
T/C 11006402 upstream_gene_variant
C/T 11006412 upstream_gene_variant
G/*,A 11006472 upstream_gene_variant
G/A,* 11006511 upstream_gene_variant
A/G 11006543 upstream_gene_variant
T/C 11006571 upstream_gene_variant
C/T 11006574 upstream_gene_variant
G/C 11006575 upstream_gene_variant
G/A 11006578 upstream_gene_variant
T/A 11006583 upstream_gene_variant
T/C 11006595 missense_variant&splice_region_variant p.Lys229Glu
T/C 11006597 missense_variant p.His228Arg
C/G 11006615 missense_variant p.Gly222Ala
A/G 11006621 missense_variant p.Leu220Ser
C/T 11006632 splice_region_variant&synonymous_variant p.Gln216Gln
C/T 11006636 splice_acceptor_variant&intron_variant
C/T 11006640 splice_region_variant&intron_variant
C/A 11006651 upstream_gene_variant
G/A 11006678 upstream_gene_variant
C/T 11006706 upstream_gene_variant
C/T 11006713 upstream_gene_variant
G/A 11006725 upstream_gene_variant
T/C 11006726 upstream_gene_variant
G/A 11006756 upstream_gene_variant
G/A 11006762 upstream_gene_variant
A/G 11006773 upstream_gene_variant
G/A 11006785 upstream_gene_variant
C/T 11006802 upstream_gene_variant
G/A 11006823 upstream_gene_variant
C/T 11006829 upstream_gene_variant
G/A 11006834 upstream_gene_variant
G/A 11006864 upstream_gene_variant
A/T 11006877 upstream_gene_variant
T/C 11006895 upstream_gene_variant
C/A 11006905 upstream_gene_variant
A/G 11006930 upstream_gene_variant
C/T 11006931 upstream_gene_variant
T/G 11006955 upstream_gene_variant
C/T 11006984 upstream_gene_variant
G/C 11007000 upstream_gene_variant
C/A 11007023 upstream_gene_variant
A/G 11007030 upstream_gene_variant
T/A 11007083 upstream_gene_variant
C/T,G 11007086 upstream_gene_variant
A/C 11007193 upstream_gene_variant
T/A 11007209 upstream_gene_variant
T/C 11007342 upstream_gene_variant
G/A 11007504 upstream_gene_variant
C/A 11007524 upstream_gene_variant
A/C 11007617 upstream_gene_variant
A/C 11007650 upstream_gene_variant
G/A 11007709 upstream_gene_variant
G/A 11007763 upstream_gene_variant
G/C 11007769 upstream_gene_variant
T/C 11007771 upstream_gene_variant
A/G 11007796 upstream_gene_variant
C/T 11007806 upstream_gene_variant
G/A 11007863 upstream_gene_variant
C/T 11007864 upstream_gene_variant
G/T 11007873 upstream_gene_variant
A/C 11007874 upstream_gene_variant
G/A 11007881 upstream_gene_variant
T/A 11007888 upstream_gene_variant
G/T 11007906 upstream_gene_variant
G/A 11007963 upstream_gene_variant
A/G 11008013 upstream_gene_variant
T/C 11008062 upstream_gene_variant
C/A 11008092 upstream_gene_variant
G/A 11008184 upstream_gene_variant
G/C 11008352 upstream_gene_variant
A/G 11008353 upstream_gene_variant
A/T,* 11008380 upstream_gene_variant
T/C 11008385 upstream_gene_variant
T/A 11008386 upstream_gene_variant
A/C 11008424 upstream_gene_variant
T/A 11008428 upstream_gene_variant
A/T 11008429 upstream_gene_variant
T/C 11008438 upstream_gene_variant
T/A 11008456 upstream_gene_variant
C/T 11008528 upstream_gene_variant
G/C,* 11008582 upstream_gene_variant
G/T,* 11008583 upstream_gene_variant
G/A,* 11008584 upstream_gene_variant
A/C 11008589 upstream_gene_variant
G/T 11008593 upstream_gene_variant
T/A 11008595 upstream_gene_variant
T/C 11008794 upstream_gene_variant
G/C 11008814 upstream_gene_variant
A/G 11008858 upstream_gene_variant
C/T 11008884 upstream_gene_variant
T/C 11008918 upstream_gene_variant
C/T 11009690 upstream_gene_variant
A/G 11009710 upstream_gene_variant
C/T 11009724 upstream_gene_variant
G/A 11009742 upstream_gene_variant
T/G 11009749 upstream_gene_variant
T/A 11009920 upstream_gene_variant
T/C,* 11009944 upstream_gene_variant
A/G 11009953 upstream_gene_variant
A/T 11009976 upstream_gene_variant
T/C 11010019 upstream_gene_variant
G/A 11010023 upstream_gene_variant
T/C 11010045 upstream_gene_variant
T/A 11010071 upstream_gene_variant
A/G 11010072 upstream_gene_variant
T/C 11010078 upstream_gene_variant
C/T 11010083 upstream_gene_variant
G/C 11010135 upstream_gene_variant
A/G 11010144 upstream_gene_variant
A/G 11010155 upstream_gene_variant
T/G 11010221 upstream_gene_variant
T/C 11010226 upstream_gene_variant
C/A 11010264 upstream_gene_variant
G/A 11010317 upstream_gene_variant
A/G 11010323 upstream_gene_variant
G/A 11010326 upstream_gene_variant
T/C 11010358 upstream_gene_variant
C/T 11010360 upstream_gene_variant
G/C 11010373 upstream_gene_variant
C/T 11010384 upstream_gene_variant
A/G 11010402 upstream_gene_variant
A/T,* 11010425 upstream_gene_variant
T/C 11010437 upstream_gene_variant
A/G 11010443 upstream_gene_variant
C/T 11010447 upstream_gene_variant
T/C 11010448 upstream_gene_variant
A/G 11010469 upstream_gene_variant
T/G 11010470 upstream_gene_variant
C/T 11010480 upstream_gene_variant
G/T 11010488 upstream_gene_variant
C/T 11010493 upstream_gene_variant
T/A 11010537 upstream_gene_variant
T/C 11010590 upstream_gene_variant
C/A 11010623 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00765.1
MGGNWVRDLGLLTDLALLHINSNRFCGIISHSFSNLRILYELDISNNRFVGRFPEHVLEISELRYIDIRFNDFEGELPPKLFKQSFDAIFLNNNRFSSNIPENIGSTPATVEVIANNHFSGCVPSSVGEMKSLNEFVPRNVCSLPHLVNFTFADNYFNGEEEGCVPQKKEPLLEDENNCIPDRPKQKQSNVCNEVISKPVDCSKNKCGHGGSPSFRSESYVVRTMMVKTQPRDGDDFTTHDLFLALLLRRRLDEEDDGLKILATQRRRARLRQWLPLVLCRCVSGDDFGGGDIQGSSDGGFFQNGSSGTWW*


CDS Sequence:
>Vu_00765.1
ATGGGCGGCAACTGGGTGCGGGATCTCGGTCTGTTAACTGACCTTGCACTTTTGCATATAAACTCCAACAGGTTTTGCGGGATCATCTCACACAGCTTTTCCAACCTTCGGATTCTCTATGAGCTAGACATCAGCAACAACCGCTTTGTTGGGCGGTTCCCTGAACACGTGCTTGAAATTTCAGAACTCAGATACATTGACATCAGGTTCAATGACTTTGAAGGGGAATTGCCTCCTAAGCTTTTCAAACAAAGTTTCGACGCTATATTTTTGAACAACAACCGCTTCTCGTCCAATATTCCTGAGAACATAGGATCAACTCCAGCCACGGTTGAGGTTATTGCCAATAACCATTTCTCAGGATGCGTGCCTTCCAGCGTCGGCGAAATGAAGTCGCTAAACGAGTTTGTCCCTCGTAATGTTTGCAGCTTGCCCCATTTGGTGAACTTCACATTCGCCGATAACTATTTCAACGGAGAGGAAGAAGGTTGCGTACCTCAAAAGAAAGAGCCTCTGTTGGAGGATGAGAATAATTGCATACCAGATAGGCCAAAGCAAAAACAGTCAAACGTTTGTAACGAGGTGATAAGCAAGCCTGTGGATTGTAGCAAAAACAAGTGTGGCCATGGGGGCTCTCCAAGCTTCCGGTCAGAAAGTTATGTTGTTAGGACGATGATGGTGAAGACACAACCGCGTGATGGAGATGATTTCACCACTCACGATTTGTTCCTGGCGCTACTCTTACGGCGGCGTCTCGACGAGGAAGATGATGGCCTGAAGATTCTCGCGACGCAGCGGAGGCGAGCACGGTTGCGTCAATGGCTGCCTCTGGTTCTCTGTAGGTGCGTTAGTGGCGACGATTTCGGAGGAGGAGACATTCAGGGCTCCAGCGATGGTGGATTTTTCCAAAATGGTAGCAGCGGCACATGGTGGTGA


Promoter Sequence:
>Vu_00765::LG1:11010757-11012757(-)
TAACAGAAGAAAGAAATATAATTCATCAAAATGGGAAAGATAAAGAAATTACCAGAAATGCCAATAACATCCATGTCAGGGAAATCATTCTGAAGAAAGTCAAGAACGTTTTGCACCCCTTTGGAAACCATGTTCATACCCATGGCATCACCCGTGCTACAGGTGAATCTCAAATAAACGTTCTTTCCAGCCATAGCACACTGAATACCTTGCAGCCTGGCAAATCTACTCGACCTGAAACCATTAAACCAAACACCAAAACTCAGCACAAATAAATAAATATCCCACACTCAAATAAACGACATCCAAGTTCTAGTCATCTATACTAAAAAATTTCTTCCACTCATCCCACTCCCCAATTATCATAAACTTTTAATGGAAAACCACATCTCGCCTAACATTTAAAAAAAATCAACCTAAATATCATTCCCTAAACTACAGAAATTCACTTAGTATGCAGGTAATAGCAAATCTCAGTGTAAATTTTTCTTATTCAACACAAACACTATTTAAAATTACTTCAACTCATAATTAATTTTGGACTCAATAAATTCTTTATGTGCAACCAACCGTATATATTAATATTCATTTAAAATCAGTTAACTGGATATCGACATTTCAACAAATTTTTCGATGATCCGATGAATCCAAACATGCAATTAAAGTGGACACCGACTACTGAATGATAAATTCTAAAATCATGATCACGAACCCAAACTCCCTCTAGAGAGTACCAAAACAAACCTGTTGAAAACAACGGAAAGGGTATCAAAATTGAGAGGATCCTCCAAGAAGAACTTCAACTGTGCAGCCCTCTTAGCAGTGGAGAACCTGACAACAGGGGCCCTTGACATGCAATCCCTCAAAACAACACTGCTGGCCCCACCAGATGCATATATAGCTTTGCACCCTCGATTGGTGCTGGCAACAAGGCACCCCTCCGTGGTGGCCATCGGCACCGTGTACTCGAACCCGTCCAGCAGCAACGGGCCCGCCACCCCCACAGGAATCTGCACGTATCCTACCGGCATTTCGCAGCACTGCCCCAAAATCGAGTCGTAATCGAACCCGTCCAGCGGCAGCCCCTCCAGCGACCGCCCCGTCATCCTCTGCAGAGCCGCGCGCCGAATCGCCGCCGCACGGCGACAGTCTCCAAGGCGAGACTCGAGCGCATAGGACGGCGTAACGCCGTTCACAACGGAGCGGACAATGTCCTCATCGTCTTGGGAGATCAACGAGCACTCAACAGGGGGCAATTTGGTAGTTGACGTAGAGGGCGAGGGCCTGGGCGAGGATTCCGAAACAGCTTCATCGACGTCCCACGCGTCGTTCGAGGCGCGTGTGATGAAGGACTGGACGAAGTCGATGCCGAAAAAGCCGAGGAGGTAGATGAATGAGGCAATGAGGGAGAAAATCGCGGCAATCTCGGAGAGCGTGACTACGTGCAGAGGTGTGTGGCTGCGGATCTTGTCGCGCCACCGGTGCAGGAGGAAGTATGCGACGGAGAAGAAGAGAGTGAAGAAGATGGCGTTGGTGAGGTATAGTGGCAGAGGGAGCGCGTCGGAGGCCTTAGGAGAGGACGCTGATGATGTGGGAGAGGAATCCCTCTTCCCGCGGTTGGGATGGTGAATAGCTCCGTCGTGGGCGGTGGGCGGCACGCGGTGGCGGAGGTCCATTGCGCGTGCGAAGAGGGTTGAGGAAAGAACGGTGAACGAATGAGTGAATAAATGGTTAAGGCATGTGATGTGTTATGTGTGACAGCGAAGAACGACGAGTGTTCAACGGAGTGACCGGACCCAACAGCGTCGTCATTTGCTGTTGCTTTGTTTTTATTAAGCACTTTTCTTCTAACTTTTTCTACTTTCTGGAACGGCCACAGACACATAATTATAAAACTTTATTAAAAAAATTAATTATTTTTTTAAATGGTAACCGTATATTAAATAAATTATTAAAGTAACTTTTTAATTGAAATTGAATCTTTTGAAGTTTCTAACCCG


Gene Sequence:
>Vu_00765(-)
ATGGGTCCATTGAAAGTAAATTACCAGTTCGCTAAATCATTTAATTCATAAACAATTTCATTGACTGCATCTCTCCATTGCAATAGAGTAAAATAAAGATTGAATTGTTTAATAATAAAGTTGTATAATTAAAGGGAACTATTATTCTTTTATTAAGTATGTCCAAAAATTATAAATAGGAAAAAAAATGTTTCACTAGGGTTGATGATTTCCATAAAACATTTTTAATTAAAACTTTTTTTGTCTAAGCTTAAAATAATTTGGGTGTACCTCTTAAGTATACTTTAATTAAGTGATTAATTTGATCGAAGTCATAGTAAAATTTTAAATTTTCTGTAATCACTTATCTTCTTATTTTTAACATGAATTTATAGATTTTCAGATCAATTTATAATTAGCAAATTTTTAATCATGATTTATTGACTAATAAACAATATTTACCCATAATCTTAATTAGATAATACTTAGTGATATTGATAATTTAGATCGGTAAGTCCTTTCAATGATATTGACTATATGAACTTTCTTCATATTATACTATATACAAAAATAACTTAACATGTATTTGATTTTTTCACACTCTTTGTAGATTCTGTTACTTCTGTCAGCTTGTTACCCAAGCCAGCAATAATCTTCTCATATTAATTATTACAATATAATAAAAAATAATACTAGAAAAATTTTATAAGTGTTTTTGTCATTTGATATTTCTATAATACTAATTATTTTTTCTACATTACTATTTTTTATGATATTTCATTACATAATTAATCAATAAAATTAAATTTAAAAAATATATTTTAGTTTTAGTAGATAAAATACTATCATTTAAAATAAAAATATTAATATTTATTTTAAAGTAAGTTGATTTTTAAATAAATAGTTATTTTAAGGGTTAAATATGTTTTTAGTCCCTGAACTATCAAGCGATTTTGGTTTTAGTCCCTACTCAAAACATTGATGGCATTTAGTCCTTGTAGTATTAAAACATGTAAAAATAGTCCTTAAAAATGGACGGCGTTAACTTTTGGTTGATCTGGCAAACGGTAATGCCACGTCCTCCGCCGGCTTCCCTGTTCTCTATCTGCCACGTTGATGTGAAAACCCTATGTTCATCTTCCTCCGAGAGAAATGCCTAACTTAATAAATCCTCCGAGAGGCGGCAACTGGGTGCGGGATCTCGGTCTGTTAACTGACCTTGCACTTTTGCATATAAACTCCAACAGGTTTTGCGGGATCATCTCACACAGCTTTTCCAACCTTCGGATTCTCTATGAGCTAGACATCAGCAACAACCGCTTTGTTGGGCGGTTCCCTGAACACGTGCTTGAAATTTCAGAACTCAGATACATTGACATCAGGTTCAATGACTTTGAAGGGGAATTGCCTCCTAAGCTTTTCAAACAAAGTTTCGACGCTATATTTTTGAACAACAACCGCTTCTCGTCCAATATTCCTGAGAACATAGGATCAACTCCAGCCACGGTTGAGGTTATTGCCAATAACCATTTCTCAGGATGCGTGCCTTCCAGCGTCGGCGAAATGAAGTCGCTAAACGAGTTTGTCCCTCGTAATGTTTGCAGCTTGCCCCATTTGGTGAACTTCACATTCGCCGATAACTATTTCAACGGAGAGGAAGAAGGTTGCGTACCTCAAAAGAAAGAGCCTCTGTTGGAGGATGAGAATAATTGCATACCAGATAGGCCAAAGCAAAAACAGTCAAACGTTTGTAACGAGGTGATAAGCAAGCCTGTGGATTGTAGCAAAAACAAGTGTGGCCATGGGGGCTCTCCAAGCTTCCGGTGAAGCCTGTACTCCACTCCCGGCGACAGTTGCCCCAATCGGATTCCGATGCCAAACCCCACAGTCTGCAGTGCATCCAAGCCATTCACGCCGCACTAGTTGCCGCCTCTCGGAGGATTTATTAGGTTAGGCATTTCTCTCGGAGGAAGATGAACATAGGATTTTCACATCAACGTGGCAGATAGAGAACAGGGAAGCCGGCGGAGGACGTGGCATTGCCGTTTGCCAGATCAACCAAAAGTTAACGCCGTCCATTTTTAAGGACTATTTTTACATGTTTTAATACTACAAGGACTAAATGCCATCAATGTTTTGAGTAGGGACTAAAACCAAAATCGCTTGATAGTTCAGGGACTAAAAACATATTTAACCCTTATTTTAACGTGTGTGCTTAGACACATTTTAATCATCATTAAAAAAATTTCTGACATATATTTTACATATTTAATATGTTAAAAAATGACTTAAATTTAAAGTATTACTTTTTTATATAGTCTTATTTCTTTTAAACACTTAATTATTTAATAAAATTAAATTTAGAAAAATATATTTTACTTTTATTTCTTAAAATAATTTTATTTAAAAAATAATATATGTTTATTCATAATAAAATATAAAAATAACTATGATGAAATAATTTTGTCTTAAAAAATTCATTATTAAAAAAATATTTATCATTTTAATATTAAATAATAATTTAAATATTTTTTATTAAATATTTTATTTTTTAAGTATGTAAAAATTTAATTAAGGTTATCTAATAAAATTTACAATTAATGATATTTACATAAAACTTAGTATAAGGTTTTAAAAATAATTACGTTTAAAACAGAATAAATTAAAATATTATATTAAATAATTTGTTTTAATGGTTTAAAACATATTTGTAATAAAAAAAGTTATATTTTTAATATTATAATTTTTATTTTACTTTTTTAACTTTTTTTTTATTTTTAAAATTTTGTAATTTTTTTCGGTGAGTCAATACTCTCTCGTTTTCATATTCATAAATCAATTCCAATCTATATAAACAAACAAGAATGAAATACACCTTTTTTATATCATAAACAATACGTAGTCTCAAACAAAAGCGATTATAATCTAATTTAATGTGTATTTATAAAATAATCAAGAGTTTGTGATAGTCAGTGTCAATAATAATGAATGAATTCAAAGTTATGTAATCATTTCCAATAAATATTTTTATTCCATTGTAATATATCGGTGAAATGTAATTATAATATGCATATGATTTAATATATACAATTATTAAAAGTAATTTAAAAACTCTATCTTATCTTATCTTGTCATTTGCATGTTGTTTGTATAGTGTTTTATGGGAAAATATAAGGTTGCAAAACAAAAACCTCAAAAGTGATATAGACTGATGATATAAAAAATAATATGTGTATTTATGTTTCGTTTTTATAGTTTTGCTTTTAGAGTTATGCAAGTATAATATGATTTCTTATGAAGAAGAGTTGCTTTTAAAACAAGTTAAATGATAATATATATTGTGTTAAATGTTATTTAATACTTAATATAATTATTAGTGAGATGTTAGAAATTAAATATTTGTCACTAACACATAACTTAAATTAATGATATGTATAAACACGAGTACGTAGTTATATATAAAAAAAGGAAATAAATAAATTAATATAAATGCACACATGTTATATCTTAATACGTTAAGTCTTACTTTAATTATGATTTTAAAATATGTTATTATGCCTAATAATAATAATTATAAATTTAGACTGGATAATAAAAATGTAAAAATGTTTTATTTGTTATAGAAAAAAAATACATCAATCTAATATAATATAATAATTAATATACGTGTTTGCACAAATGTTGATGGATTCGCAAGAAAATATTTAACATAATTAGTGGTGAGTAAATTTGAATCTTTTACATATAATTGTACTGAATATTTTTTTTTCAAAATAGTCACTTTTTATGTTAGTGTCAAAATACAGAAAATCGAATCGATATTATATTTAAATAATAAAAATTTGAAGTATAAATATAATTGAAGTTTTATTAGTTTAAAAGTATATAAATTTTTTAAATTTTTATTTTGAGAGCTCTTTTCCTTTTTTTCTATACTTTATAATCGCTAGTTAGTCTATTTAAAGATCTTGTTAGGGTGATTCTTAAGGTAAACTTAAAGTAAGTTGATTTGTTACCTTTTTCTTAGTTTATACGTTTCTTTGTCCATGTGGACCATCTTGGTTTGTGTGTAGTGTTTGAATTTTCTATAACCCTTGCGACTGGACATGGTGATTTTCTGGGTTTTTGGTTTGGCTTTGCAGGTCAGAAAGTTATGTTGTTAGGACGATGATGGTGAAGACACAAGTGAAGGAAGAACGTCGGCGCTAATGGAGGATTGCTCTGTGCACGATTTGTGATTTGTAATTTGCGATTGCTGGGTTCATTGCAGGTCTGGTTTTGATGTAAGTTCGAGAATGAGGTGCGGCGTCCATGGATTTTGGATGAGAACGAAGGCAGCAGCGAGGAGGCTCGCGAAGTGATGGCGGCTTTGGGTGACATTCTGCAGCCGCGTGATGGAGATGATTTCACCACTCACGATTTGTTCCTGGTGAGGCAGGGGTGGACAAAGATGAAGATGGTGAGCGAGAAGCGTGAATGAGAAGGCCATGGTCAATGCGTGTTGATGTTCGACGGAGGCGCTACTCTTACGGCGGCGTCTCGACGAGGAAGATGATGGCCTGAAGATTCTCGCGACGCAGCGGAGGCGAGCACGGTTGCGTCAATGGCTGCCTCTGGTTCTCTGTAGGTGCGTTAGTGGCGACGATTTCGGAGGAGGAGACATTCAGGGCTCCAGCGATGGTGGATTTTTCCAAAATGGTAGCAGCGGCACATGGTGGTGA