Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00747 LG1 10740368 10744431 PREDICTED: lysM domain receptor-like kinase 3
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 10740499 synonymous_variant p.Ser44Ser
A/C 10740514 missense_variant p.Arg49Ser
G/A 10740517 synonymous_variant p.Gly50Gly
G/A 10740521 missense_variant p.Ala52Thr
G/A 10740557 missense_variant p.Val64Ile
C/G 10740625 missense_variant p.Phe86Leu
T/C 10740721 synonymous_variant p.Tyr118Tyr
A/G 10740740 missense_variant p.Lys125Glu
A/C 10740750 missense_variant p.Asp128Ala
G/T 10740855 missense_variant p.Ser163Ile
T/C 10740898 synonymous_variant p.Leu177Leu
T/C 10740907 synonymous_variant p.Asp180Asp
G/C 10740928 synonymous_variant p.Ala187Ala
T/C 10740946 synonymous_variant p.Asp193Asp
C/T 10740967 synonymous_variant p.Tyr200Tyr
T/G 10740973 synonymous_variant p.Pro202Pro
G/A 10740994 synonymous_variant p.Glu209Glu
C/T 10741026 splice_region_variant&intron_variant
C/T 10741028 splice_region_variant&intron_variant
C/G 10741038 upstream_gene_variant
T/A 10741041 upstream_gene_variant
T/C 10741049 upstream_gene_variant
A/T 10741069 upstream_gene_variant
T/A 10741101 upstream_gene_variant
A/G 10741142 upstream_gene_variant
C/G 10741146 upstream_gene_variant
G/A 10741185 upstream_gene_variant
C/T 10741200 splice_region_variant&intron_variant
C/G 10741303 upstream_gene_variant
A/C 10741351 missense_variant&splice_region_variant p.Lys230Thr
G/A 10741361 stop_gained p.Trp233*
G/T 10741384 missense_variant p.Trp241Leu
G/T 10741438 upstream_gene_variant
G/C 10741465 upstream_gene_variant
C/T 10741470 upstream_gene_variant
A/G 10741642 upstream_gene_variant
A/G,* 10741671 upstream_gene_variant
T/A 10741775 upstream_gene_variant
A/G 10741795 upstream_gene_variant
A/G 10741807 upstream_gene_variant
A/T 10741816 upstream_gene_variant
G/T 10741848 upstream_gene_variant
A/G 10741882 upstream_gene_variant
G/T 10741884 upstream_gene_variant
T/A 10741894 upstream_gene_variant
G/A 10741903 upstream_gene_variant
G/A 10741951 upstream_gene_variant
C/T 10741981 upstream_gene_variant
A/G 10742118 upstream_gene_variant
A/T 10742149 upstream_gene_variant
C/A 10742165 upstream_gene_variant
T/A 10742171 upstream_gene_variant
T/C 10742247 upstream_gene_variant
A/G 10742254 upstream_gene_variant
G/T 10742302 upstream_gene_variant
C/T 10742319 upstream_gene_variant
G/T 10742324 upstream_gene_variant
T/C 10742325 upstream_gene_variant
T/A 10742351 upstream_gene_variant
A/C 10742412 upstream_gene_variant
A/C 10742423 upstream_gene_variant
A/T 10742425 upstream_gene_variant
C/T 10742576 upstream_gene_variant
C/T 10742592 upstream_gene_variant
T/C 10742609 upstream_gene_variant
C/A 10742617 upstream_gene_variant
A/T 10742623 upstream_gene_variant
C/A 10742627 upstream_gene_variant
C/T 10742732 upstream_gene_variant
C/T 10742806 upstream_gene_variant
G/C 10742810 upstream_gene_variant
C/T 10742851 upstream_gene_variant
A/G 10742870 upstream_gene_variant
C/T 10742931 synonymous_variant p.Phe254Phe
G/A 10743002 upstream_gene_variant
G/A 10743022 upstream_gene_variant
T/A 10743032 upstream_gene_variant
G/A 10743119 missense_variant p.Cys285Tyr
A/G 10743166 missense_variant p.Thr301Ala
T/G 10743241 upstream_gene_variant
T/A 10743266 upstream_gene_variant
G/A 10743296 upstream_gene_variant
C/T 10743330 synonymous_variant p.Gly327Gly
A/G 10743442 upstream_gene_variant
G/C 10743472 upstream_gene_variant
T/C 10743487 upstream_gene_variant
T/G 10743488 upstream_gene_variant
G/T 10743542 upstream_gene_variant
A/G 10743548 upstream_gene_variant
A/T 10743554 upstream_gene_variant
G/A 10743571 upstream_gene_variant
A/T 10743586 upstream_gene_variant
T/C 10743588 upstream_gene_variant
A/G 10743589 upstream_gene_variant
A/T 10743602 upstream_gene_variant
T/C 10743616 upstream_gene_variant
A/G 10743626 upstream_gene_variant
A/G 10743665 upstream_gene_variant
T/C 10743666 upstream_gene_variant
A/C 10743688 upstream_gene_variant
A/T 10743726 upstream_gene_variant
G/A 10743906 missense_variant p.Val389Met
A/G 10743996 upstream_gene_variant
T/A 10743998 upstream_gene_variant
T/G 10744010 upstream_gene_variant
G/C 10744013 upstream_gene_variant
C/T 10744022 upstream_gene_variant
A/T 10744052 upstream_gene_variant
C/T 10744053 upstream_gene_variant
C/T 10744062 upstream_gene_variant
A/G 10744063 upstream_gene_variant
G/A 10744085 missense_variant p.Asp404Asn
T/C 10744153 synonymous_variant p.Ile426Ile
T/A 10744197 upstream_gene_variant
A/T 10744264 missense_variant&splice_region_variant p.Ile432Phe
G/T 10744267 missense_variant p.Ala433Ser
A/G 10744360 missense_variant p.Ile464Val
T/C 10744361 missense_variant p.Ile464Thr
C/T 10744362 synonymous_variant p.Ile464Ile
A/G 10744380 synonymous_variant p.Glu470Glu
C/A 10744407 synonymous_variant p.Leu479Leu
T/A 10744415 missense_variant p.Leu482Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00747.1
MFLLLITDPMELRKGLLLLFLLLEYVCCNVEAKCLKGCDLALASYYVSRGLALDDITHLMKSSVVSNSDDIISYNKDKTFNKNIFFFDRINVPFPCDCIHDEFLGHVFEYSAAEGDTYDSIAKVKYADLTTVELLRRFNSYGQNGIPKNAKVNVTVNCSCGNSQVSQEYGLFITYPLRPDNNLHDIANEAHLDAQLLQNYNPGVNFSKESGIVFIPGRDQFGDYVPLHPRKTGLALKLHRELVVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGTGKDPLTWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKNAVLKTGECVAESKGLVALFEEALDQSNPSEAIRKLVDPRLGENYPIDSVLKIAQLGRACTRDNPLLRPSMRSIVVALMTLSSPIEDFDDETASYENQTLINLLSVR*


CDS Sequence:
>Vu_00747.1
ATGTTCCTCTTATTGATCACTGATCCAATGGAACTCAGAAAAGGGTTACTGCTGTTATTTTTGTTGCTGGAGTATGTTTGTTGCAATGTTGAAGCAAAGTGTTTGAAGGGATGTGATTTAGCTTTAGCTTCCTATTATGTGAGTAGAGGGTTGGCCTTGGATGATATAACACACCTGATGAAATCAAGTGTTGTGTCCAATTCTGACGATATAATAAGCTACAATAAAGACAAAACATTCAATAAAAATATCTTCTTCTTTGACAGAATCAACGTTCCATTTCCCTGTGATTGTATCCATGATGAGTTTCTGGGGCATGTGTTTGAGTACTCAGCTGCTGAAGGTGACACCTATGATTCGATTGCCAAAGTGAAATATGCCGATCTCACCACTGTTGAGCTTTTGAGGAGATTCAACAGTTATGGCCAAAATGGTATACCAAAAAATGCCAAGGTTAATGTCACGGTCAATTGTTCTTGTGGGAACAGCCAGGTTTCACAAGAATATGGGTTGTTTATTACCTATCCACTTAGGCCTGATAATAATTTGCATGATATTGCGAACGAGGCTCATCTTGATGCACAGTTGCTGCAGAATTACAATCCTGGAGTCAATTTCAGCAAAGAGAGTGGGATTGTTTTCATTCCAGGAAGAGATCAATTTGGAGACTATGTTCCCTTGCACCCTAGAAAAACAGGTTTGGCTCTCAAACTTCATAGGGAGTTGGTTGTGCGTTTGATTGGATATTGCGTTGAAGGATCCCTTTTCCTTGTGTATGAACATATTGACAACGGAAACTTAGGCCAATATTTGCATGGTACAGGGAAAGATCCTTTGACATGGTCTAGCCGAGTGCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATATATTCACGAGCACACTGTACCAGTGTATATCCATCGTGATGTAAAATCTGCAAATATATTAATAGACAAAAACTTCCGTGGAAAGGTAGCAGATTTTGGCTTGACTAAACTTATTGAAGTTGGAAGCTCCACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGACGTCTCTCCAAAAGTAGATGTGTACGCTTTTGGAGTGGTTCTTTATGAACTGATTTCTGCAAAGAATGCTGTTCTGAAAACAGGTGAATGTGTTGCTGAATCCAAGGGTCTTGTAGCTTTGTTTGAAGAAGCACTCGATCAGAGTAATCCTTCCGAAGCTATTCGCAAACTGGTGGATCCCAGGCTTGGAGAAAACTATCCAATTGATTCAGTTCTCAAGATTGCGCAACTTGGGAGAGCTTGTACAAGGGATAATCCACTACTACGCCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCTCCTATCGAGGATTTCGACGATGAAACTGCTTCCTACGAAAATCAAACTCTCATAAATCTACTGTCTGTAAGATGA


Promoter Sequence:
>Vu_00747::LG1:10738368-10740368(+)
AACTGAAACCTATATTTGCTTGTAGCATGATTTGTAGCTGTGATTGTTTATAAAGATGAATTTGGGAGAGTGAATTTGAGAGGAAAAATAAATAAAAGTGGTTGTTTGAATTAAGGAAAAGTTAGTAAAAAGTAAAGGAAAATGAAAGGAAATTTTGTAAAATTTAATGAATGATGTGATTAGTTTGATAGATTAAAAAAATGTTTTATCCTCTTTATTTTTTATTTTTTATATTTTTTCTTATGCTTTTGTTTTATCTTGTTTATGCTCCTATATTCATGGCCTTCATTGTTATAACTTAAAGGATTATGCTTTTATGCTTTTAGTAACTAAAATTTTGATAAATAACATTGAAGACCAATTTATATTTTAATTTACAAATTAATTATAATATTTTATTTAAATATCACTGACTTTTAATTTATATTATCATATCTAAATTAGTTAGTATGATGGTTAATTATTTTTTATCTTTAAAATTATTTGTTATTTAATGATTTTTTGTAGTGATAATTTATCAACAAATAATAAAAAACAATACAAACGATAATTGAATGTATACGAATAAGGACAAATGAGAGAAATTTTTATTATCAACAAATAATAAAAAACAATACAAACAAACTTGATGCATTATATTAAATTGGAGAGTTTTGAAATGAGAGAAACTAAAAACTACAAAGACACCCTTAACCTGAAGAGGATAGAATAGAAACTTTAAAATTGTAACCCACCTTATTAATTACTAACTATGAAATATATGTAAACAGATGAAATATTCGAAAATATAGATGTGTAATAAACTAAAAAATCTGCTTATGTAATTTACGGAGCTTAAATATTTTGCATAAAAAATAAATTTTATATAAATAAAATATTAAGTATAAAGAAGGTAGTAGATCTCACCTTGAGTTATTTTAATTTATTCTAATTTTTTTCACTACACTACAAACTAATAAAATATTATCTATATTTTCAACTTTATCAAATGTAGTTTCTTATATTGATATAGGTGTAATGAAGAGCATTAACAAAGTAAGAGATAATATAATTAATTGACGAAATTTTTATTCTTTCAACTAGTTAATAATGCTTACAAAGATAATATTAATTTATTAAGAGAAACATCAAATAACATTATCAATTAATTAATATCAAGACAATACGTCACTAATTGTTTTTTATAAATTAAAAATTAAAAATATGATTACATGTGAGATGAAAATCAGATTTCTCCATGAAACACTTTGGTATATATATTTTTTTTCTAATAAAGCTAACAATACATTAAGCGGAAGATCTATATTCTCTTACTAGGAGATGTGGGACTTCATATGCTATTGGCTTTATCTCGCAGATTCCTTTTTGTTTTTTATGAGTGAAGTCAAAGTTGGAGACAGGCGTGCCTCAAAATATAAAACGGAAAATTGTTCTGCGTTTTCAGAACCATGAGATGACACAATTCGAGGTGGTAATTTGTTGGCACATTGGCCGACACTGTTGGCATTTCGGGTGCAAAGGATCAGACAGAGCCAGCTCTCCCAATCACGAAGATTCCCTGCTAGTTGTTCAATGCATCCTCGTCAAACATAACCATTAATATATGCAGAGTTCAACAATTATTCCCTCAATAAGAGACATGCAAGTTGCTACCCATGAATAAATAAATAAACAAAGGACATTCAAGTCAACTTCAATTATTTTCTACCCAATTGTACTGTTTCCTTCCACACTCTCGTTGAAACTGTTAAACGTTATAACCTATCAGGTGTTTGTGCAGAAAATAAAAAAGCATAAACGTGGGCATATGAATTCATAGTTTAAGTTCATTCACTCATGTAATTACACCCTTTTTTATGTTTTAGTTACTTATTTTATAATGTGTGTTTTAGAAGTGGAAGTGTGACATGGTTTCAAGGAAAAAAGTATGAATATGATTATTGGCTTGTAACAGGTGTAGAAAGTCCTAGAAATCTAGTTTTCTGATTTACGTTTCTTTA


Gene Sequence:
>Vu_00747(+)
ATGTTCCTCTTATTGATCACTGATCCAATGGAACTCAGAAAAGGGTTACTGCTGTTATTTTTGTTGCTGGAGTATGTTTGTTGCAATGTTGAAGCAAAGTGTTTGAAGGGATGTGATTTAGCTTTAGCTTCCTATTATGTGAGTAGAGGGTTGGCCTTGGATGATATAACACACCTGATGAAATCAAGTGTTGTGTCCAATTCTGACGATATAATAAGCTACAATAAAGACAAAACATTCAATAAAAATATCTTCTTCTTTGACAGAATCAACGTTCCATTTCCCTGTGATTGTATCCATGATGAGTTTCTGGGGCATGTGTTTGAGTACTCAGCTGCTGAAGGTGACACCTATGATTCGATTGCCAAAGTGAAATATGCCGATCTCACCACTGTTGAGCTTTTGAGGAGATTCAACAGTTATGGCCAAAATGGTATACCAAAAAATGCCAAGGTTAATGTCACGGTCAATTGTTCTTGTGGGAACAGCCAGGTTTCACAAGAATATGGGTTGTTTATTACCTATCCACTTAGGCCTGATAATAATTTGCATGATATTGCGAACGAGGCTCATCTTGATGCACAGTTGCTGCAGAATTACAATCCTGGAGTCAATTTCAGCAAAGAGAGTGGGATTGTTTTCATTCCAGGAAGAGGTACGCTCTTCTCTTCTGTTGTAAATTACAAGACAAAAATTCAACAACTCTGATCAAAGTATCTTTCTTTTGGTATTATCAGCATGTTGGGGGTTAAAATAATCACTTTGTTCTTGTTCAAAGCATTTTGGATAACCTTTTATGCATTTGCTTGACGTTTTAGTTTTGTTTAACTTGCCAGATCAATTTGGAGACTATGTTCCCTTGCACCCTAGGTGGGTAACTTTGATTGTCTCACCTTTCTGCTGAATTATGCACATACAATTGAATGTTGCTGCATCTTTGATTCTATCCTTTTAACTTAATTTTCTTTTCCATATTGCAGAAAAACAGGTTTGGCTCTCAAACTTCATAGGGAGTTGGTTGTGAGAAGATTCTTTTCAGCTTAATGTTTACATAAATATGATAACACAAAGAAAAAGTCAGTGTCTCATCTTAAATTGACTTCTGTATATAAGCAGGTCTAGCTACGGGTGCTGTTGCTGGAATATCCATAGCAGGAATATGCGGTCTTCTATTATTAGTAATATGCATATATGTTAAATTCTTCAAGAAGATGGAAGGAGAGAAACCTAAATTGCCAACAGAAAAATCTACGGCGTTTTCAATTCAAGATGGTACGGTTAAATTTTTGTATTCATACAAGACATATCTTTTAAACCATTCACATAACACATTCTTAGTAATGGGGGAATGTTAGTGCCATACCCCTTATTTTCATTAACACATTCTTTTCTTAATCTTGCATCCCTTGTAAAAATGCCTGTTATTTATCAACCTGTTCAAAGATTACATGTCATCAACTCTTGCATATTCCTAGAATTTGATATGTACTAGCTTAATGGCCATGGTACTGCTTATGGATTTTTCTTCCTCTTCCGAGTACAGCCTCTGGAAGTGCAGAATATGAAACTTCAGGATCCAGTGGGACTGCTACTGCTACTGGCCTTACAGGCATCATGGTGGCAAAATCAATGGAGTTCACATATCAAGAACTGGCAAAGGCTACAAATAACTTCAGCTTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTGTATTATGCAGAATTGAGAGGCGAGGTACATACATACATAATCAATTTTATAACATAATCAGACAAAATACCAGTAAAGGAACACAGTTTTACTTTTAGCCAAGTGATGTAATTGGTGACATATAAAGGCTTTTCCCTGGTGATTGATATTTTAGAATATAGATTAGAATAATAGATATATGTTTAATTGTAAGGCTTTAAGTTCATTACATTGTGTATGAGATAAATAAAATAATCAAGTGTATAAGAAACAAGTAATTTCATTGAATAAGCAAGTTTTTGCTTTTAATTCCATTTCAGGTTAACCATTTACCTATTTTGCTTTACTCATCATTTTTTTATATGCAGAAAACTGCAATTAAAAAGATGGACGTGCAAGCATCCACTGAATTTCTTTGTGAGTTGAAGGTCTTAACTCACGTTCATCACTTGAATCTGGTACAACATCCTTCAAACAACTCCAAGCATGTGTATATCTGGGAATGATACTTAACCATTTTCCGTAAAGTCTGAATAACAATTAGTCTGTTACAACGTAAAAATTCTGGGTGATTTCGTGAACAAGAATTACAAAACAGAGTCTGTAATTATCCTGAAAAGTTATTTCTGCAAATCCAAGTGATAATCCTACAAATTAACATGAAACCTTCATTACTTATGTGACATGCAAAATAACACCTGTGAGATCTTATCTTACTTCTGTGGTGGTAGTTTGAGCGTCAACGGAGTTTACTTTTTGGGCTAAACAGTTCCAAGAGTGTTCTATATCTTCTTCTGTATTCATATAACTACCTTTCATGTAAACCACAGGTGCGTTTGATTGGATATTGCGTTGAAGGATCCCTTTTCCTTGTGTATGAACATATTGACAACGGAAACTTAGGCCAATATTTGCATGGTACAGGTGAGATCAGATTGGGTTGATGCATGATTATCTTTGTCTGTGATATTACCTTACTGTGGAACGATCAATGATGGTAATAATAACATGATTCCAGGGAAAGATCCTTTGACATGGTCTAGCCGAGTGCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATATATTCACGAGCACACTGTACCAGTGTATATCCATCGTGATGTAAAATCTGCAAATATATTAATAGACAAAAACTTCCGTGGAAAGGTTACACTTCTACCACTCTGCATAAACCTGATTTTCCCATTCTTCTTGGAGACTTGATAAAATGTGTATGATTTTAAATACAGGTAGCAGATTTTGGCTTGACTAAACTTATTGAAGTTGGAAGCTCCACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAGTATGATTTGTTATTTTGTGTTAAATGATACCACACCTCTATATGAAATTTGGATTTAGTTCAAGAAAGAACATGTGTGTTATCTGTATTATTAATAGTAGGCCATCTTATTATTGATGAATCACATGCTTATCGTATTGATGAACAGATCATAATCATAACAGTATGGGAAATATTGATTAATTAAGTAGTAAAATCAAATTCAGTTTTCAGAACATATCATTAAGTGAACCTGAGCTTGGACTTTGACTGTTTAAATGATCAGACTATTACTCAGTTCATTAATTATTTCTTTGTAATTTTTGCAATGACATGACTAGGTATTTTTGTCCATGGATTAATGATCTTATCTCAATTATGGAATTTTATTGATTATGTGAATTTTCTGCAGATATGCTCAATATGGTGACGTCTCTCCAAAAGTAGATGTGTACGCTTTTGGAGTGGTTCTTTATGAACTGATTTCTGCAAAGAATGCTGTTCTGAAAACAGGTGAATGTGTTGCTGAATCCAAGGGTCTTGTAGCTTTGGTGAGTCTTCATGCTCGGAATCATTCTACTAAAAAACACTCTCAATTCACAAATTTACATTTCAAAGACAGTTAAGAGAATACACCCACCTGAACAGAAATGAAGTTACCCTTCACTTGTTTTGCATTGCAGTTTGAAGAAGCACTCGATCAGAGTAATCCTTCCGAAGCTATTCGCAAACTGGTGGATCCCAGGCTTGGAGAAAACTATCCAATTGATTCAGTTCTCAAGGTTGATTTTTTTTTTCTGTGAAAATAATTTGAATGTTTATATCTTACACAGTTTATCTCAGCCAAAACTTAGTATATTGATTGTTTGAGTTGCAGATTGCGCAACTTGGGAGAGCTTGTACAAGGGATAATCCACTACTACGCCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCTCCTATCGAGGATTTCGACGATGAAACTGCTTCCTACGAAAATCAAACTCTCATAAATCTACTGTCTGTAAGATGA