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ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00610 LG1 9325681 9326346 PREDICTED: transcriptional activator Myb-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, glucosinolate metabolic process, positive regulation of auxin mediated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of auxin mediated signaling pathway, positive regulation of auxin mediated signaling pathway, regulation of transcription, DNA-templated, glucosinolate metabolic process, regulation of transcription, DNA-templated, positive regulation of auxin mediated signaling pathway, negative regulation of response to salt stress, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, glucosinolate metabolic process, positive regulation of auxin mediated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of response to salt stress, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
T/C 9325780 missense_variant p.Ser34Pro
C/T 9325781 missense_variant p.Ser34Phe
C/G,* 9325890 missense_variant p.Asp70Glu
T/C 9325896 synonymous_variant p.Ile72Ile
G/A 9325903 missense_variant p.Glu75Lys
A/C 9325938 synonymous_variant p.Thr86Thr
C/A 9325939 missense_variant p.Leu87Ile
T/G 9325944 synonymous_variant p.Ser88Ser
C/G 9325948 missense_variant p.Leu90Val
T/C 9325952 missense_variant p.Leu91Pro
G/T 9325957 missense_variant p.Gly93Cys
C/T 9325959 synonymous_variant p.Gly93Gly
C/T 9325962 synonymous_variant p.Arg94Arg
G/T 9325966 missense_variant p.Asp96Tyr
T/C 9325983 synonymous_variant p.Asn101Asn
G/T 9325993 missense_variant p.Ala105Ser
T/A 9326000 missense_variant p.Leu107His
C/T 9326002 missense_variant p.Arg108Trp
G/T 9326006 missense_variant p.Arg109Leu
C/T 9326023 stop_gained p.Gln115*
A/G 9326031 synonymous_variant p.Ser117Ser
C/T 9326033 missense_variant p.Ser118Leu
T/G 9326037 synonymous_variant p.Ala119Ala
G/A 9326076 stop_gained p.Trp132*
G/A 9326173 missense_variant p.Gly165Arg
G/T 9326271 missense_variant p.Glu197Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00610.1
MTDVGNDRVKGSWSPQEDEILLKLVNQYGARNWSLISSSIPGRSGKSCRLRWCNQLSPEVQHHPFTSTEDQIIIEAHAIHGNKWATLSRLLPGRTDNAIKNHWNATLRRRSTMSQLSSAASPNTKRASPLEWDYPFKKQHAEKEREEIPVVTPLSLFPSAEKSDGELEEGEKRVAEENKISNQDYFLKIMRRMIADEVSNYLHTLYKGREYSLDHPPNLPK*


CDS Sequence:
>Vu_00610.1
ATGACGGACGTTGGCAACGATCGGGTGAAGGGCTCGTGGAGTCCTCAGGAGGATGAGATACTACTGAAATTGGTGAACCAGTATGGCGCGCGGAATTGGTCCCTCATCAGCAGCAGCATTCCGGGGCGTTCTGGCAAGTCCTGCCGGCTGCGATGGTGCAACCAGCTGAGCCCGGAGGTGCAGCACCACCCCTTCACTTCGACGGAGGACCAGATTATCATCGAGGCGCACGCTATTCACGGGAACAAGTGGGCCACACTCTCTCGCCTCCTCCCTGGCCGCACAGACAACGCCATTAAAAATCACTGGAACGCCACCCTCCGGCGCCGTAGCACGATGAGTCAGTTGTCATCGGCTGCATCGCCAAACACCAAGCGCGCCTCTCCGTTGGAGTGGGACTACCCTTTCAAGAAACAGCATGCGGAGAAAGAAAGAGAGGAGATTCCCGTTGTCACGCCTTTGAGTCTTTTTCCCTCGGCTGAAAAATCAGATGGAGAACTGGAAGAGGGAGAGAAAAGAGTGGCAGAAGAAAACAAGATTTCGAATCAGGATTACTTTCTGAAGATCATGCGGCGCATGATTGCTGATGAGGTTAGCAATTACCTTCATACTTTGTACAAGGGAAGGGAATACTCTTTAGATCATCCTCCAAATCTTCCCAAATAA


Promoter Sequence:
>Vu_00610::LG1:9323681-9325681(+)
AAATTGTTAATTATCTATGAAGACGACATAGAAAACGAAATAAATATGGGAGGTTGCTCCATATAAATCTCTTATTGTAAATCGTTGTTGAGAAATGCATTCTTGACATCTTGTGGATAAAAATGTCATAATAGTCACCCAATCATAAATAAACTAACTAAGATTATCTTGGAGAAAAAACATATATATGAACGGGTCAAACATAGGTTAGAAGAGAAAGTAACAGAAAAAATCATGGATAAACAGTAAAAAAATCTTAAAAATCCAACATTACTCGACGCTCTAAATATTTGTCTGAGAGGAGAGACACATAGGAGCTCGATGAAAGCGTAGTTGAAGGCACGATAGTCGTCTGGCCGAAACGATCAAAACCATATACTTGTCGGTCAACACTAGAACTCTAACAATGACAACAGTCGACAGAGATGCCATTGACAACAATAAACGACATTGACGCCAGCGACAACATGTGTATTGAAAGAAATTGCAATTTATAATATAAAAAATATGAATCAAACCCAAAATACAAATAAAAATAATAACAAAATAACTAAAAAATAAATGATAAAAGTAATATATCAAAAACTAATAAAAGTTGTTACAACAATATTTTAAATATAAATTTTATCGAAAGGTACTTATACATGATTTAACTTTTGTTTATATACGAACAAACATTGAATGAACAAAATGGATTATTATTTTGATGAGTGAACTTTAAGAAATTACATTGCTTATATTTCAATAAATATTTTTTCCAACTAATATAACTGATTATATTGTTAATGGGCATTCATAAAGAGAGGGTTGAATGTTTTATCCATATATTTAAAAATAAATAAATTATATAAAATAAATTAGCAATGGAAAGTAATTATATGATTTTTTTAGTACAAAAATTGTTTCTATTTTTTTACCAACTAAATTTATTTATTTTTAATATACATTTTGTAAAAAAGATTTAAAAAATGGAGAAATTAACTTTGATTCAATAAGTATTGATAAAAAATCTATTAAATTAAAAATAAAAACTGAATAAATAATTAATTATTTCTTTTGAACTTATACCTTTTACCTTACCTTTGGAAAAATTCAATTAAACTTATTATAAACATTATTCAATACACCAAAAATATAATAATTAAATCTTATTAAATCTTACAAATAAGAGAAAATCATGAAAGTAAATTTATTTTAAACCTACAAAAATGGAGGCAGAATAAAAAAAAAGGGTGAAATGTGATGGATGCACTATATGCATGTCTAACTGCACAAACAAATTACAGTTGCAATTTCCTTCCTTCCAATCCCATCTCATATATCTTTCAACTATCTACAACCAACCAATCTTAAATAAATAAATAAGCCGCCACACCTCACCTTCATTTTGACTTCTCATAAGTTAGTTAGTTGCCCAATCTATCATATATTAATAAATAATAATAAATTCTTATAATAATAATAATAATAATAACAATTATTATTATTATTATTAAAAGTCAATATAACATTTATGTTCTTAACTGTCACACTTATCGTTTTTGCTGAACTAAAATGGAAAACTAACACATTTTAGAAAATAAAACGAATGTCCTTCGTTACAAAATTTGAAAACAACACTATCCAACAAATAAACAGGTCAAAAATATCAGAGTTGATAGGAAAACGTTATCTGAATCAGTTAGACAAAGTGGAAGTTATAACTTCCTCCATATTAATTAATTAATTAACATTCTCTTGGCCCACTCTCTTCATAAACCCATCAATTTTATTCAACCACTTAAAAACTTCAAAATCTACCTGTAAACTTCCACTACCTGAAACTGAAACCACCTTACGTAAATCCACTCTGCGGTTATACTTTTTAAGTTTCAAGTTCTTTTCAACTAAATCTTTATATTCATTTATTTATTCATTTGTGATATAAACAGAAAAATGGAAATAATAATATAACTAACACGCAACAACCTTAGACAACATTTTCGCAAACAGATGAAGGA


Gene Sequence:
>Vu_00610(+)
ATGACGGACGTTGGCAACGATCGGGTGAAGGGCTCGTGGAGTCCTCAGGAGGATGAGATACTACTGAAATTGGTGAACCAGTATGGCGCGCGGAATTGGTCCCTCATCAGCAGCAGCATTCCGGGGCGTTCTGGCAAGTCCTGCCGGCTGCGATGGTGCAACCAGCTGAGCCCGGAGGTGCAGCACCACCCCTTCACTTCGACGGAGGACCAGATTATCATCGAGGCGCACGCTATTCACGGGAACAAGTGGGCCACACTCTCTCGCCTCCTCCCTGGCCGCACAGACAACGCCATTAAAAATCACTGGAACGCCACCCTCCGGCGCCGTAGCACGATGAGTCAGTTGTCATCGGCTGCATCGCCAAACACCAAGCGCGCCTCTCCGTTGGAGTGGGACTACCCTTTCAAGAAACAGCATGCGGAGAAAGAAAGAGAGGAGATTCCCGTTGTCACGCCTTTGAGTCTTTTTCCCTCGGCTGAAAAATCAGATGGAGAACTGGAAGAGGGAGAGAAAAGAGTGGCAGAAGAAAACAAGATTTCGAATCAGGATTACTTTCTGAAGATCATGCGGCGCATGATTGCTGATGAGGTTAGCAATTACCTTCATACTTTGTACAAGGGAAGGGAATACTCTTTAGATCATCCTCCAAATCTTCCCAAATAA

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