Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_00512	LG1	8167620	8168360	PREDICTED: transcriptional regulator SUPERMAN-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/A	8168105	missense_variant	p.Phe162Leu
G/A	8168163	missense_variant	p.Val182Met

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_00512.1

MKSQSQHEKPAIIGDDRKNNWEERAFAEDAVGSMWPPRPYSCTFCKREFRSAQALGGHMNIHRRDRARLKQNLNPHYQNYHRIKSLLGNNNHPFSSPLISTQINCGLTHAHSYSSQATTISTTRSLSCISTQENKFSPSSSSSFILGQMGSPNSEQAMEYGFKGLECGNFVETSLSMGMTTVFGQNSSPNISCKRLKNNISSLPIFLRPCSKDKGLPFQPVEISVELHHAMEDLDLELRLGKQQVE*

CDS Sequence:
>Vu_00512.1

ATGAAGTCACAGTCACAGCATGAAAAACCAGCAATTATTGGAGATGACAGAAAGAACAATTGGGAAGAAAGGGCTTTTGCAGAAGATGCAGTTGGTAGCATGTGGCCTCCAAGACCTTACTCTTGCACCTTTTGTAAGAGAGAGTTCAGGTCTGCACAAGCTCTTGGAGGTCACATGAATATTCACAGAAGGGACAGGGCTAGGCTCAAACAAAACCTTAACCCTCATTACCAAAATTATCACAGAATCAAATCCTTATTAGGTAATAATAATCATCCTTTTTCTTCACCACTCATCTCCACCCAGATCAATTGTGGTCTTACTCATGCTCATAGCTATTCTAGCCAAGCAACTACAATTTCTACGACCAGATCACTCTCATGTATATCCACACAAGAAAATAAATTTTCACCTTCCTCTTCTTCTTCATTCATCTTGGGACAAATGGGGTCTCCTAATTCAGAACAAGCAATGGAGTACGGTTTTAAAGGCTTGGAATGTGGTAATTTTGTTGAAACAAGTTTGTCTATGGGTATGACTACCGTGTTTGGCCAAAATTCATCACCAAACATCAGTTGCAAGAGACTAAAAAACAACATTTCTTCTCTTCCTATTTTCCTCAGACCATGTTCAAAGGACAAAGGCCTGCCTTTTCAACCTGTGGAAATCTCAGTAGAACTTCATCACGCAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAACAAGTTGAGTAG

Promoter Sequence:
>Vu_00512::LG1:8165620-8167620(+)

TACTGATTATATAATAATTATTTTTAAAATTTATTTTAAAATGATTTCCAATTAGCATTATTTTTTTTATATATAATTAATGAAATTTTCACTCTCTACTAATCCAGATAATATAGATAAGCGAGGTGTGAATTAATCTTGATATAAGGATTAAAATATTAACTCTGAGGAATTAATTAAATTATAAAATAAGTTCATACAAAATGAAATGTTGACAGCAGTTATATAACTTGGAATAAACTATCACTTTACACATTAATTACACCACCTTAATTATGATGGCTTTTGAAACTCAATTTATATACTATATCTTATAATGGCTTTCAGTTCCAAATGTGCAGGATTAACACATAGATGTTGTAGCCCTATATTTTTTATCATGCTGATAACTCTATCAAGGAGATAATTTTTTTTTGATACATGTTGAAAGTCTCACATAGATGAGACATATAAGATCATTTTGGATATAAATTTTATCTGATAAATTTATTTAATAAAATTGAGTTAGATTTAAAATCATTTTTTAAAATATATATTATTAAGAGTGATCCAAAACTTATTTAAGAAAAATTTATTGTTTGCTGAGTTTATCTTATTAATTAATTATTGTTGGATCATTATATTGATGCCTAGATTTTATATTTAAAATATATTATCTGAGTGTGAAACAAATATATTAGAAATATGATATTGACTAAAAATAATTTTAAGTTCAATTTATAAGTAAATACATCAAAATTTATGTAAAAGAATTTCAACCTTTCTACTCAACTAAAACTATAGTTTGGTAATTTTTTTAACAAATATTTTAGCATGTTTTCACTAATTTTCATTTAAAAAGTTTTAAAATTATCCCTAGATGAACTTAGGTGTGTTTGAATGGAGTGAAAGAAAAGGAAAAAGTAAAAGATCTAATTAACCCACCATCATTTGCCTCCTAAATTTTAAGACTAATAATTTGACATGAGAGTATAAGATTGTTGAAATGTCTATAACATGCAAAAGATTATAGTGTTTTAGATTAAATCAAATTTGACACTTAGCTACGGGATATATATATATATATATATATATAAAGAACACACTTCAGCCCTTTGAAAAACAAATATAAAAAACCTCTTTTAAGGGGAATAACTCTACTAGGTAATAGTAATTTAATCCTTGAAGACAATTTAATTAGAAGAGAAAAATGAAGAAATTTGAGTAGGTACATTTTTTCCACATGTAAGAACTTCAATTACTGGGAGTGGTAAAATGTTACAGGGGCCTATCCTATAGCCTAATGTGCTGGTTCAGTATTATAAATGACCTATATGTCATTTTTCAGTTTCAATTAATATTATAAAAATTATCATTCTAAATATAATATTATATGTACTTCTTTTATTTATTTCTCTTTTACTTGCATGAATGCATAACATTGGTATTAGTCAAAGCTCTTACCACCACAAACCGTAGGGTTCATGGAAGCTTTAAAGGATCAAGTTCGGCAGTTGTATTTACAAATTTATATTTTATCTTCATAACCATATTCTTCAAATTACTAATACTTCTAACCTTATCTAATGAATTGCTTATTTTTACTATCTAAGTGTCGTTAACTTAAGAAAAAACCAGACAGAAGCTCTTCTGGTAGCAATGGCAATCACATTATAATTCCAATAAAATATTTGAAATAAGACGTTAAATTTGAATTTTATAAACAAATAACACACGTGTAGTTGTAAAAAATTTCTGTTCCTAAAGTAGCAGTAACCTGCTAGAAAAGCCAAAAAGATTCAGAACCTTTACAGCTAGACTTTTCTTTTTCTTCATAGACTCCTTATGGTTGCTTTCAATTATCTTTCAAGGGACATGCTCACTATCACTCCATTGCTATTTTCATGGCTTAATTCTTCCCTATAGATAAGCAAGCCATTATCATATTTATATTTTCCATCATCAGTCAGCTTGAATTCAGCACTATCAGTGTTTGATGTTTGTGAGGAGAGAACAAAAGA

Gene Sequence:

>Vu_00512(+)