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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00507 LG1 8104519 8104917 CBL-interacting serine/threonine-protein kinase 5
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Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, response to abscisic acid, response to abscisic acid, protein phosphorylation, signal transduction, protein phosphorylation
Cellular Component   located in   cytosol, nucleus
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding
SNP Position Effect Amino acid change
A/T 8104535 missense_variant p.Asn6Ile
G/A 8104544 missense_variant p.Gly9Asp
G/T 8104550 missense_variant p.Ser11Ile
A/G 8104553 missense_variant p.Lys12Arg
C/T 8104561 synonymous_variant p.Leu15Leu
A/G 8104582 missense_variant p.Arg22Gly
G/A 8104584 synonymous_variant p.Arg22Arg
C/T 8104588 synonymous_variant p.Leu24Leu
A/T 8104694 missense_variant p.Lys59Met
G/A 8104695 synonymous_variant p.Lys59Lys
C/T 8104696 synonymous_variant p.Leu60Leu
C/T 8104705 stop_gained p.Gln63*
T/C 8104725 synonymous_variant p.Ser69Ser
C/T 8104750 missense_variant p.His78Tyr
C/T 8104764 synonymous_variant p.Asn82Asn
G/C 8104799 missense_variant p.Gly94Ala
G/A 8104802 missense_variant p.Ser95Asn
A/T 8104820 missense_variant p.Asn101Ile
C/T 8104821 synonymous_variant p.Asn101Asn
C/G 8104827 missense_variant p.Asn103Lys
C/A 8104832 missense_variant p.Ser105Tyr
G/A 8104843 missense_variant p.Val109Ile
G/A 8104876 missense_variant p.Asp120Asn
A/T 8104886 missense_variant p.Asn123Ile
G/A 8104913 missense_variant p.Arg132His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00507.1
MDRRSNGTGGSKNILFNKYEIRKLLRQGNFTKVYHGRNLSTNDIVAIKVIKKEKLQKDKLVKQIKHEVSVMHLVHHPHIDFNGDDVGGNVNVSGSENGNSNSNHSGELVGAKPAHPSYNDLSNLFETRSDRR*


CDS Sequence:
>Vu_00507.1
ATGGATCGCAGATCCAATGGCACGGGTGGCAGCAAGAACATCCTGTTCAACAAGTACGAGATAAGGAAGCTATTGAGGCAGGGGAACTTCACCAAAGTGTACCACGGGAGAAACCTCAGCACAAACGACATCGTGGCCATCAAGGTCATAAAAAAAGAGAAGCTTCAGAAGGATAAGCTGGTGAAACAGATAAAGCACGAGGTCTCTGTTATGCACTTGGTTCATCACCCTCACATCGACTTCAACGGGGACGATGTCGGTGGCAATGTAAACGTCAGCGGCAGTGAAAATGGTAACAGCAACAGCAACCATTCTGGGGAACTAGTCGGGGCCAAGCCAGCTCATCCGTCTTATAATGATTTGAGTAATCTGTTCGAAACGAGAAGCGATCGTCGTTGA


Promoter Sequence:
>Vu_00507::LG1:8102519-8104519(+)
CAAGTTTGCAACGACCTCAACCAACTGCTTATTTATCATAATGAACGAATTTCAACACTTGCTCATGAGGTTGAAGGTCTTGCACCATTTGCTCATGAACAAGCATGTACCATGGAGTTCATCAAGGCTATAAGGATACTCAAATCATTGGATTAGTCAATTGAACAAACAATATACTTAAACTTTGGAGATTTTGCTAACCATCATGCTTGTATTTATCACTTCACCATTGAATTTCATCTTACTAACAATGTTGAGTGTACGTCCTAGATAGGTGTCCACTTTCTCACCCTCTTTCATTGCAACCTACTCGAATTCACGACGCAATGCTTGAAGCTTGAGCACGCTTGACTCTTGTGGATCCCTCATATTTTTGTTGCATGGGTTGTCGTATGGCCTGTGAAGTGCTCTTATATAATATAGATTCAAGAACTTCTTTATTAATAGCTTGGAACGAGGATTTCTTTAAGGTTGCTCTTAGAGACAATCTTCTGTTGTGCTTTTGTTAGTCAGATTCCAAGCTTTGGAATCCCCCTCTAAGAGCAGCAATCGTAGAAAATTTTTTTAATGTCATTCTTCGTGTATTCACTCTAATATTGCACTTACTCTCTCACATTGTTTTTACTAGTGTACATTCCCTTATAAAACTTTGATACCAATTATTGATATCAAAATATGTTTAGAATATATTTTATTTAAAAGAAAACTTGAAATTTATATATAAGTATCTGAAAAACTCTAAAAAGCTGCATAATCATAATATCATGAAAAAGGCACCCAAAGAAAATCCTACAACTAAATAAAGACTAATTTTCCTTATAAATTAAGAAATTTATTAAAAAAACCTTAAAAACAAACTAATTAACAAAAATATACTCTTCAAATCTCCTTCAAATGTCATTTGGTTTATAACATTCATATTTTATAATTTCTATTTAATTTTTTATAACTTAAAAATTTAATTATTTCTAAAGTAACATACTAATAAAGTTAAAGTTAAGATCTTCCTTATTTCTTATTCTATTTCAATTTTAAAGTTTTTTTATGAGACTTAGAACTTAAATTTTAAGACCATGCTTAATATTTTCAAATTTGGTTAAACATATTGGGAAGTCCCTATTTATGTGGGTTTTTCACAGTTAGATTCATGTCTTATCGGTTTCGCCAATTTAGTCCTTTATAATGAAAAATTGACTCAATTGGGCCCCTACCGTTAAATTGGCTTAACGAGGTTAAATTTTTGATGACTTGTGATATTGACGTGGATAGTTTTTTAAACATGGCATTCACAGAGCTCTACGTGGAATTTAAAAACATTTTAACATTTTGATTAAAAAATTTAAAAAAAAAAAGTCATCTTCCATTACAGTCAAGCACCACCCAGAACCATCATCAGAGAACCTAATCGCGCCTCAGAACCACCATCATCTTCCTCGTGCACCATCAACCTGCAATCAAGTAACCACAAAATCAAAATCGTGACTCTGCCATGTTCGCTTTAATTCATCTCCTTTCATCCAGCACCGCGAGGGCAAATCGTCACCATGGCATACGTAACCAGCGCTCAAGCTCTTCGCGCCGCAACCGAAATCATCTATTTTCTTCTCCATTAAACCATTTGAAACCTGTAAAGAGAAAACAGAATCACAAATCTAAAACCCCCCAAATTAGCCACGAACCCTAAATCGCGCTAGACACAAAACGCGAGACTTTCGAATCTCCATAGAACACCATCTCTAATCGTAAAGAACCCCAAATCCACCCTTTTTCTTTTCCCTCCCCCACATGCAACCATGAAGATTTTCAACCCATCCAAATCTTTTCTCTAGAACATGATGTGTCCATTGGACACCCTCTTCATTATAAGGGTCTAGCCCTTCGATCTGGGTCTCTCCCACCTCCACCAATTCCAATTCAAAGCCTCCAATTGAAACCCAAAACCAAAACCACTAACAGCGTTAGGGTAAAACTGGTTCGGTCAACAATCCCCGCCGCCGAGA


Gene Sequence:
>Vu_00507(+)
ATGGATCGCAGATCCAATGGCACGGGTGGCAGCAAGAACATCCTGTTCAACAAGTACGAGATAAGGAAGCTATTGAGGCAGGGGAACTTCACCAAAGTGTACCACGGGAGAAACCTCAGCACAAACGACATCGTGGCCATCAAGGTCATAAAAAAAGAGAAGCTTCAGAAGGATAAGCTGGTGAAACAGATAAAGCACGAGGTCTCTGTTATGCACTTGGTTCATCACCCTCACATCGACTTCAACGGGGACGATGTCGGTGGCAATGTAAACGTCAGCGGCAGTGAAAATGGTAACAGCAACAGCAACCATTCTGGGGAACTAGTCGGGGCCAAGCCAGCTCATCCGTCTTATAATGATTTGAGTAATCTGTTCGAAACGAGAAGCGATCGTCGTTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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