Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00419 LG1 7102607 7104610 PREDICTED: protein ODORANT1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of lignin biosynthetic process, regulation of lignin biosynthetic process, L-phenylalanine biosynthetic process, L-phenylalanine biosynthetic process, regulation of secondary cell wall biogenesis, regulation of phenylpropanoid metabolic process, L-phenylalanine biosynthetic process, regulation of phenylpropanoid metabolic process, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of secondary cell wall biogenesis, cell differentiation, regulation of lignin biosynthetic process, regulation of phenylpropanoid metabolic process, regulation of lignin biosynthetic process
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 7102951 synonymous_variant p.Ser206Ser
T/C 7102968 missense_variant p.Ser201Gly
C/G 7103281 synonymous_variant p.Leu96Leu
C/A 7103528 upstream_gene_variant
C/T 7103559 upstream_gene_variant
C/G 7103613 upstream_gene_variant
C/T 7103680 upstream_gene_variant
T/C 7103690 upstream_gene_variant
A/C 7104208 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00419.1
MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQYCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLPNQQTQNHPQQEQQQLHQPPEEEQNYQQPLQIDFDTEVDPNKELEISVESSNVSEGKEEEQIMATPQFETMDQLMNGFCTDEVPIIEPNEILMPCAPSSSATSTSSSNSTNILEDLQLPDFEWFCDYIDSSLSNNNNNHEDKNTNNSSVALWDDDDDFISKLNWLVSEDDDCDGPLTQFSRTVTDSWAFGLF*


CDS Sequence:
>Vu_00419.1
ATGGGAAGACAGCCATGTTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTTATCAGCTTCATTCTCACCAATGGCCAATATTGCTGGAGAGCTGTCCCTAAGCTTGCAGGATTATTAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGACGAATTACCTTAGACCAGACTTAAAGAGAGGCCTTCTTTCAGAATACGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTCGGCAATAGATGGTCCAAGATTGCTTCTCATCTTCCTGGAAGAACTGATAATGAGATAAAAAACCACTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTATCACACACAAACCACTCCCAAATCAACAAACCCAAAATCATCCCCAACAAGAACAACAACAACTACACCAACCACCTGAAGAAGAGCAAAATTACCAACAACCTTTGCAAATTGACTTTGACACCGAGGTTGACCCTAACAAGGAGCTAGAGATTTCAGTTGAATCATCAAATGTCAGTGAAGGCAAAGAGGAAGAGCAAATCATGGCAACACCTCAATTTGAGACAATGGATCAGCTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATTGAACCTAATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCAGCCACCTCTACATCTTCTTCAAATTCAACCAACATCCTTGAAGACCTGCAGCTACCTGATTTTGAATGGTTTTGTGATTACATTGATAGTAGTCTTAGTAATAACAATAACAACCATGAAGACAAGAACACCAATAATAGCAGTGTGGCTTTGTGGGATGATGATGACGACTTTATTAGCAAACTTAATTGGCTGGTCTCTGAAGACGATGACTGTGATGGTCCTCTCACTCAATTCTCAAGAACTGTCACGGATTCATGGGCTTTTGGCTTGTTTTGA


Promoter Sequence:
>Vu_00419::LG1:7104610-7106610(-)
ATGACAACACAAGTGCCATACAAATTGTAACAAATCAAGTTTTCTATGAACTCATAAAGCACATAGAGGAGGTTGATTGTCAGTCAATCAGGAAATCTAGAATATGTAACGATTATTCTCTTTTATTAAAATTCACAACTCTAGAATATATATATATATATATATATATATATATATATATATATATAATCATAAAAATAAAGTAAACAAAAATACAAATATTAGAAAGAAATAAAAATTATCAAATGTGTGTCAGAAATATATCATTCAACAAAATCACACAAAAAAATTATATAATTCAGAGTATGATAAGATAGAAAATACCTTTGAGATTTAAGAAATTTTTCTAGTCAAATTTTTGAGAGATAATAAAAATTGTTTTAACAAAATAAATCTTTTTTAAATAAAACAAAAATTAAGAAACAAAGACAATAACTAAGATAATTATTTTATATTACCTAGTAAATGAAAATATCATGTCATTGCACGTTTAAAATTAAAAGTCAAATAGTCTCGTATGAAAAAAAATAAACAATAAATAAAAATATTAAAAGAGGATAAAAATTGTCAAATGAGAGACCTAAAAACTATTTTTTTCTCTCGGATTAAAAAAAATAAGAATATTAAAAGAGAATAAAAATAGTCAAATGTGATAGCTAAAAACTCTTTTTTTCATTGTAATTAATAATTCAAACCACGATGAAAATAAGGACAGAGATAAATATTGGAATATAGAGAAGACAAATATGTACACACTATTCCCATACTAATTAAAAAAATTGAATATCATTTATACTCATACTAATATTAAATTAATATGAGAAATTTTATAAAAAACAGAACGAGTTAGGATAATACTCACACAAACATGTTTATTTGTCATTGTTAAGAATGATCACATGGTAAAAAAGAATGACATATGTTTGGTTTCCAAATTAGGCATTTTGGAAAGAAATTAAAGCATTATAATCTGTTCTCTCTTGAAGTATTTTTTTGTAAAGTAGGAAAAAGGAAGGAAAGTCAACTCACTTTTTTGTGGATGTAAACGAAAACAACAGAGAATTAAACCCTAGTTTAAAATGACTGAAATGTTTAGAAGTTCAAGGGTTGAAAAATGTGGTTGTGTAAACAAATTTTAGAAATTCGATTTGATTTGATTTTGATTTTAACTGTTTAAGTTGATGGAGCATCTGGTAATTGATAAATATGTCGAAAATCATGACTGAAATTTTGATGTCTAAATAATAGATAGTTTGAAGAATTTATATAGCATTGTTTTATTAGCATTTGTCTGGGTCCAACCTTTTGTTTTCTAGTTAGGGAATAGATCTATATCCGAATATTGAAACTTGTGTGTGATGATTTGGTGTTTTGATTCAGGCAAAGTACTGTTAAAACAAATGATCCATTTTTCTTTCTTGTGGTCTCTTCGCTAACGCGTTCACACATTGGAAGTAGTTAGTAGAAATAGAAAACGTCGAAGAAAAATTATGAGAGGAGACTCTGAATGTGTACATCACTTGCGGTATTGTCTTACTTTTACTTAATACTCTTACCATCCTCAAGAGCTTTGAGTCAGTGAGTGGAGTATCTCACGCTTCAATCTCAAGCAAAGTTGGTCGATGAGGTGGCGCTTTCTGATTGAGACCCGGCACGTGCCTCATCCCTCATGCACACGTGTTCATTTTGAACAAAATCTCTAACACCATACAAGGGACAAGTGACAAACAAGAAATTGAATTGAATAATCCACTCAATTTTGCTCATCAATAAAAAAATGATAAATTGAGATAGTGGGGTTTGATGACTTTTGGCAACTTTGGAGTTTAGAGTAGTTGATTTCTGTATATAAATAAGTAGGTGGTGCTGCTCTATCGTTACTTAACTCTCTTTAAACTCTCGTTCTCTCTCTGAGTTAGTGACACTCTCGTTTTGAGCCTCAGGTGTTCGACGATTGTTCTTCATATCTTGGCTGTCTAGCATTTCCCTTTTGGTATAAA


Gene Sequence:
>Vu_00419(-)
ATGGGAAGACAGCCATGTTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTTATCAGCTTCATTCTCACCAATGGCCAATATTGCTGGAGAGCTGTCCCTAAGCTTGCAGGTATCCTCTCATTGCTCCTATTTTTAATCATTTTAGTCCTTAATCAATGCCTTAAAATGGGAGGCTGAAATCCCAGTTTTTTTTCATGCTCATGCTGTTTTGTTTTTAAAACGGTTCATCAATGTTTTGCATTTTATGGTAATTGGTTTTTGGTATTTCTTCCTTGTTCCTCTGTTCAAATCCTTTGATTTCCATTCAAGGAGATCAAACACCACTCAAAATTGGCATATTCATTTCACCTTTCGGAACTACTCTTCAAAACATGTTTTTGCCTTTTAACTACCACAATACATCGAATGGTGTTTCATTTGAGGAAAGAGATCCCCTTGACGGACTTCAATGAGTTCATCAGACTAACGATTGGGGTGTGGTTCCATGCAGGATTATTAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGACGAATTACCTTAGACCAGACTTAAAGAGAGGCCTTCTTTCAGAATACGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTCGGCAATAGGTTATTTCCACCCCCACCATTTTCCCTTGTTTAACTTTTCTGCATGTGTATTTTTTCTTGAAGAACCATACTAATGATTAAACAAAATGATTGCTACACTGCTCATTTGAAAAATTATACTAGGCTTATCCCGACAAATGATTAAAACCATCCAAAGATATCTTAAGTATCACCAAACGCACCAACCAAATTGAGTTTATTATTCTATAATTCATACGCCTCAAGTTGTAATTTCTTTATTCATCTTAGGCAAAAGACGTGGTCCTATAATGGCTCACACCTTCCAGGGGAAGGAGGCGTACAAAGCTTGTAGACCAAGCTCTTTTCTTTTCATTCTTTCATTTTTTTTTTCAGTACTAAAAAAAGTAAAAAGGAACTGCTCATGATTGCAGTTAAAATTGACTAAAGCTGGGTGTGATTGACGTAGAAAAGTAAATAGGGTCGAAATTTGTCTTGTGGGAAAAAAATTCTGATTTCGTAACTTGCATGGCAGATGAAACATTTTAGTGGCTACAAAGTCATTCTTCCTTTCAAGTGATGTCCGTGTGGACCTTATGTTAATGATGGAAACTTTCTTTCGCGTGTTTTATTTTTGTAATAAAAAAATATATGTTTGCATATTATTGTTTTACTGATTTTTGTCATTTTCCTTTTCAGATGGTCCAAGATTGCTTCTCATCTTCCTGGAAGAACTGATAATGAGATAAAAAACCACTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTATCACACACAAACCACTCCCAAATCAACAAACCCAAAATCATCCCCAACAAGAACAACAACAACTACACCAACCACCTGAAGAAGAGCAAAATTACCAACAACCTTTGCAAATTGACTTTGACACCGAGGTTGACCCTAACAAGGAGCTAGAGATTTCAGTTGAATCATCAAATGTCAGTGAAGGCAAAGAGGAAGAGCAAATCATGGCAACACCTCAATTTGAGACAATGGATCAGCTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATTGAACCTAATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCAGCCACCTCTACATCTTCTTCAAATTCAACCAACATCCTTGAAGACCTGCAGCTACCTGATTTTGAATGGTTTTGTGATTACATTGATAGTAGTCTTAGTAATAACAATAACAACCATGAAGACAAGAACACCAATAATAGCAGTGTGGCTTTGTGGGATGATGATGACGACTTTATTAGCAAACTTAATTGGCTGGTCTCTGAAGACGATGACTGTGATGGTCCTCTCACTCAATTCTCAAGAACTGTCACGGATTCATGGGCTTTTGGCTTGTTTTGA