Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00391 LG1 6778090 6779601 PREDICTED: receptor protein kinase TMK1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, signal transduction, protein phosphorylation, protein phosphorylation
Cellular Component   located in   plasma membrane, nucleus, extracellular region
Molecular Function   enables   protein binding, protein binding, protein binding, transmembrane receptor protein serine/threonine kinase activity, protein binding, protein binding, protein binding, protein binding, transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, protein binding, protein binding, protein binding, transmembrane receptor protein serine/threonine kinase activity, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
G/A 6778135 missense_variant p.Glu16Lys
G/A 6778154 missense_variant p.Gly22Asp
G/A 6778156 missense_variant p.Val23Met
T/C 6778188 synonymous_variant p.Leu33Leu
C/T 6778204 missense_variant p.Pro39Ser
A/T 6778224 missense_variant p.Glu45Asp
G/A 6778235 missense_variant p.Gly49Asp
A/C 6778297 missense_variant p.Ser70Arg
T/C 6778315 missense_variant p.Ser76Pro
A/C 6778367 missense_variant p.Asn93Thr
A/T 6778546 intron_variant
C/T 6778549 intron_variant
A/G 6778550 intron_variant
C/T,A 6778552 intron_variant
A/T 6778554 intron_variant
G/A 6778578 intron_variant
T/C 6778585 intron_variant
T/G 6778607 intron_variant
C/A,* 6778609 intron_variant
T/A 6778611 intron_variant
C/T 6778685 intron_variant
A/G 6778687 intron_variant
A/G 6778693 intron_variant
C/T 6778723 intron_variant
C/T 6778732 intron_variant
A/G 6778735 intron_variant
A/G 6778746 intron_variant
C/G 6778763 splice_region_variant&intron_variant
C/T 6778773 synonymous_variant p.Leu110Leu
G/T 6778793 synonymous_variant p.Val116Val
G/A 6778805 synonymous_variant p.Gln120Gln
G/A 6778835 synonymous_variant p.Val130Val
G/C 6778847 missense_variant p.Trp134Cys
A/T 6778849 missense_variant p.Glu135Val
G/C 6778860 missense_variant p.Ala139Pro
C/T 6778894 missense_variant p.Pro150Leu
A/T 6778918 missense_variant p.Lys158Met
G/A 6778947 missense_variant p.Val168Met
A/G 6778964 stop_lost p.Ter173Trpext*?
G/T 6778965 missense_variant p.Asp174Tyr
C/T 6778983 missense_variant p.Arg180Trp
G/C 6779006 missense_variant p.Met187Ile
T/C 6779008 missense_variant p.Met188Thr
G/A 6779021 stop_retained_variant p.Ter192Ter
G/A 6779040 missense_variant p.Val199Met
G/A 6779043 missense_variant p.Gly200Arg
A/C 6779046 missense_variant p.Lys201Gln
A/G 6779069 synonymous_variant p.Gln208Gln
C/A 6779079 missense_variant p.Leu212Met
A/C 6779112 synonymous_variant p.Arg223Arg
G/A 6779113 missense_variant p.Arg223Lys
C/T 6779130 intron_variant
G/A 6779279 intron_variant
G/A 6779291 intron_variant
T/G 6779363 intron_variant
A/G 6779437 intron_variant
G/T 6779448 intron_variant
G/A 6779458 splice_region_variant&intron_variant
T/A 6779475 stop_lost p.Ter229Lysext*?
G/C 6779494 missense_variant p.Trp235Ser
G/A 6779495 stop_gained p.Trp235*
T/C 6779498 synonymous_variant p.Val236Val
A/G 6779508 missense_variant p.Lys240Glu
G/T 6779512 missense_variant p.Cys241Phe
A/G 6779524 missense_variant p.Asn245Ser
T/A 6779529 stop_lost p.Ter247Lysext*?
G/A 6779545 missense_variant p.Cys252Tyr
G/C 6779576 synonymous_variant p.Thr262Thr
G/A 6779586 missense_variant p.Gly266Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00391.1
MGHAIAELAGHYCVREPYQRPGVGHTVNVLSSLVELWKPSDLNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSSLLPSLDNTQTSILNRPYGFPDSFTSAEGRHSGSDNESVKITVAISNVSVGGASEMGTIPGNEAEDIQMVEAGNMVISIQVLRNVTGNFSEKNILRHGGFGTVYRGELHDGTRIAVKRMECGEIIGKGATKFKSEIVVLTKVSPQTSLVNNNFLRHSGLDNESVKITIASSNVSVGGASETRTIRGSEAGDI*


CDS Sequence:
>Vu_00391.1
ATGGGTCATGCTATTGCAGAGTTAGCTGGTCACTACTGTGTCAGGGAGCCATATCAAAGGCCTGGCGTGGGTCATACTGTTAATGTGCTTTCTTCTCTTGTTGAACTCTGGAAACCATCTGATCTGAATTCTGAAGATATATATGGCATTGACCTTGACATGTCCTTGCCACAAGCACTTAAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGTCCTCTTCTTCATCTTCGCTTCTACCAAGCTTGGATAACACACAGACAAGTATACTTAATCGCCCATATGGATTTCCTGATTCTTTCACATCAGCAGAAGGTAGGCATTCTGGGTCAGATAATGAGAGTGTGAAGATAACAGTTGCAATTTCAAATGTTAGTGTTGGTGGTGCTAGTGAAATGGGAACCATACCTGGCAATGAGGCAGAAGACATCCAAATGGTTGAAGCCGGAAACATGGTCATTTCCATACAAGTTCTGAGGAATGTCACGGGCAACTTCAGTGAGAAGAACATATTGAGACATGGAGGTTTTGGAACGGTTTATAGAGGTGAACTCCATGATGGTACAAGAATAGCAGTGAAAAGAATGGAGTGTGGGGAAATAATAGGGAAGGGTGCAACAAAATTCAAGTCTGAAATTGTTGTTTTGACAAAAGTTTCGCCACAGACATCTTTGGTTAACAATAATTTTCTTAGGCATTCTGGGTTGGATAATGAAAGTGTGAAGATAACAATTGCTAGTTCAAATGTCAGTGTTGGTGGTGCTAGTGAAACGCGAACCATACGTGGCAGTGAGGCAGGAGATATCTAA


Promoter Sequence:
>Vu_00391::LG1:6776090-6778090(+)
AGTTGTGCATGACAGTAAACTTTAATATAATGTTTCTGAATTTAAAATGCATACCTCCACTCGAGTTTCTGGAATATGGCCAAGAAGTGCACATCTGATGATGCTAAGAATGAAGGGTTTAAAGTTGTTTTTGCTAGTTCATACATTCAAATCTGATATTCTTTTCTCTGTTTTATATATATAGAAAACAAATCAGGGCTACTAAAAACTTCTTAATGCTTAATTAGACTTAAAAAATTGTTGTTAACAAAACTAGAGAAGAGGTCATATTTAATCCATGTTGAGGTCTAAAAATTTGATTCCACGTCATGTGGTAGAGTATGACCTTGCATCTCTACCCTTATCGTTGTTATCCCGTGGCTGGCATTGTCCAATTTATTTTCTATTAAGATTAAAAGGAAAAAAGAATGATGAAGTGACGAAAAAAAGGTCACGTTACAATCCAAGTAGACTCAGGATCCTAAGAATTAAAATTAAATTTTGAAAGAGAAAAATAACAAGATAATGAAAATGATTCTCAGTGCTTGCATTGACAGAACATTGAGCCCTCTGGTTATCAAGAACTATACCTTCAGAACCAGATACCTATAAATCTCTTTCGGTTTGAAGCAAAACAACATGAAAAACTTTGTGCAGCACAAATTTAAAGTGGGAAGAATATTTGAACGAAATTTCCTCTCACGTCAAGCCAAACTCTATAAAATGTTATATAAAGGTGAAAGACTAGATAATCCATAACGTTGTATCTTCCTCAAAATACCTACAAAGGCATAACAAATTTCTCTGAAAATTGTGTTGGGTCAGCACACTGAGCCTAAATTATTTAGATGAGGTCCAAACCAGACTTTGACAACAAAAAAGTGTGTTCTTTTAACGTAATAATGTGTTGTTGATGCATTTTTGGTTTCAAACACGTAAAGTTGCAGTAGATGTTGAGTTACTATTGTCAATCCAATCATTAAGAAACCAAAATCGGTATTTGTTTGAGCAGCAAGAGAAATACAACTTCAAAGGTCAATTTAATGAATATTGGACACTATGCCAGCTAGGGAAGCACTACAACAAGCAAGAGAAACAGATATGTGGGCCAAAAGAAAACATCAACTATTATGTGTGCAGAATGAAGCAACCACGACTATTGGGTTGGGCTAGAAAACAAATACCATCGTTGCTTTCTGTGGAAATGTGTACGCATCCAGTTGCATTCCCGACCCATAAAACACCCTTCCTTTGCTGTTCTCTGTTTCTGTCTTTCTCACGCCACTAAAAACAGCTGTGTTTGTGTTTTAGGATTACGTCTGATTTTCAATGTTATAAAAAATAGAATTAAATTTATTAACATAATAATTTCTGATTGTGTAATTCAGTGAGTAGGGTAGTTACAGGTTGGAAAACTATTTTTGACCTGAAGGTGAAGTACTTTACCCACATTAAAAAATGTATAGATGTAGTAAATCTAGATGAATAATAAGTTGTAGATAATTTTCATAAAAATAATTAAGTCATATAGATTATTGAGGAAACATAGTTATTACAATTGTTAAAAATGTGAGATAGATAGTAGTGGTAAGATAATTAAAATAATAAAATAAAGAAATGGAATAACTGATATTGGGCCTTACCTGGATGCTATGCAATGTCCTGTGGTCAGTTTCTTCCCGTACCTCCATAAATGTCTTACTGTAAATACATATAAATAAACTTTCCATTTTGTTCTTTTTTGGATTTGTTAATTCAGAAATAAAAAATTACTTTCAAATTACATAATCTGAAAAATATTTTTTTAAAAGCTAATTTTAAATTGCATAAACTAAAATTAAAAAAAAAATGAGTTCTGAATTATGCAATCTGGAAATTAAACTCCAGAAATTATATAATTAAAAAAGAAAAAATAAATTATTCAATTATTGAAGTGCTTGAGAAATTTACGGAGGTACGGGAAGAAACTGCCACAAGCCTCTACATCCATGTTATTCATGTTCAATGCATACAAATTGACA


Gene Sequence:
>Vu_00391(+)
ATGGGTCATGCTATTGCAGAGTTAGCTGGTCACTACTGTGTCAGGGAGCCATATCAAAGGCCTGGCGTGGGTCATACTGTTAATGTGCTTTCTTCTCTTGTTGAACTCTGGAAACCATCTGATCTGAATTCTGAAGATATATATGGCATTGACCTTGACATGTCCTTGCCACAAGCACTTAAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGTCCTCTTCTTCATCTTCGCTTCTACCAAGCTTGGATAACACACAGACAAGTATACTTAATCGCCCATATGGATTTCCTGATTCTTTCACATCAGCAGAAGGTAGGTGATCATTCTCAGTTGTAAATATTTGTTTTAGTGTGTTTGTTTATTCTCTAGTCCTTGCCTCTTGTGGTGGATTTTCTATATATATATCACAAAAACATTCTTTTTTACTTGAAAAATAAAGAAAAACTACCACACACCTATTGTTTTATTTGGTTTGATGACGGTTTTTGTTGTTAATTGTTTGCTACAATATGCCTAATATGTTTCTTTCTTTTGACTCTTTATTATAGTTTTATATTTTCTTGTGCATAAATATTCGTAACTATTCAACAATTATGATTGGTTATTTTTCTTTTGTTATGTTTACTCGTGGATTACGTATGTGGTTGTAATGGTTAAAAAAAATTTCTTAGGCATTCTGGGTCAGATAATGAGAGTGTGAAGATAACAGTTGCAATTTCAAATGTTAGTGTTGGTGGTGCTAGTGAAATGGGAACCATACCTGGCAATGAGGCAGAAGACATCCAAATGGTTGAAGCCGGAAACATGGTCATTTCCATACAAGTTCTGAGGAATGTCACGGGCAACTTCAGTGAGAAGAACATATTGAGACATGGAGGTTTTGGAACGGTTTATAGAGGTGAACTCCATGATGGTACAAGAATAGCAGTGAAAAGAATGGAGTGTGGGGAAATAATAGGGAAGGGTGCAACAAAATTCAAGTCTGAAATTGTTGTTTTGACAAAAGTTTCGCCACAGACATCTTGTATGTTTGCTTATTCTTCAGTCCTTGCTTCTTGTGCTGGCTTTTCTTTGTGAACTTGTTTATCTTTTCTCATGGTATATATATATATATATATCACAAAAACATTATTCTTTACTTGAACAATAAAGAGCAACTACCACACGCCTTTTAATTTATTTGATTTGATGACGGTTTTTGTTGTAAATTGTTTGCTACAAGATGGCTAATATGTTTCTTTCTTTTGACTCTTCGTTACAGTTTTATTATTTTCTTGTGCATAATTGTTCCTAATTGTTCAACACTTATGGTTGAATATTTTTCTTTTGTTATGTTTACTATTATGTGGATGATGTATGTGGTTGTAGTGGTTAACAATAATTTTCTTAGGCATTCTGGGTTGGATAATGAAAGTGTGAAGATAACAATTGCTAGTTCAAATGTCAGTGTTGGTGGTGCTAGTGAAACGCGAACCATACGTGGCAGTGAGGCAGGAGATATCTAA