Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00375 LG1 6538507 6540936 PREDICTED: protein REVEILLE 1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   auxin biosynthetic process, regulation of transcription, DNA-templated, regulation of auxin biosynthetic process, regulation of transcription, DNA-templated, regulation of auxin biosynthetic process, auxin biosynthetic process, auxin biosynthetic process, regulation of transcription, DNA-templated, auxin-activated signaling pathway, circadian rhythm, regulation of transcription, DNA-templated, auxin-activated signaling pathway, regulation of auxin biosynthetic process, auxin-activated signaling pathway, auxin-activated signaling pathway
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA binding
SNP Position Effect Amino acid change
T/C 6538804 synonymous_variant p.Leu323Leu
G/A 6538873 synonymous_variant p.Asn300Asn
T/A 6538876 missense_variant p.Gln299His
A/G 6538880 missense_variant p.Leu298Pro
G/C 6539027 missense_variant p.Thr249Ser
A/G 6539078 intron_variant
G/T 6539079 intron_variant
T/C 6539159 intron_variant
T/A 6539166 intron_variant
G/A 6539264 synonymous_variant p.Asp232Asp
T/C 6539419 missense_variant p.Ile181Val
C/T 6539432 synonymous_variant p.Val176Val
T/C 6539596 missense_variant p.Ile122Val
T/C 6539662 intron_variant
G/A 6539924 intron_variant
T/A 6540118 intron_variant
A/C 6540123 intron_variant
A/G 6540129 intron_variant
G/C 6540170 intron_variant
A/T 6540187 intron_variant
T/G 6540398 intron_variant
A/T 6540440 intron_variant
T/C,A 6540534 intron_variant
A/G 6540876 intron_variant
A/T 6540909 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00375.1
MAIQGKNAFTRSRGGPPIGDEICLSPGVHSVADISLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKIVRETSGNSTALEESIEIPPPRPKRKPIHPYPRKLIEIPKKEISNSEHPLRSISLKSSDFGQENNSPKSVLSTVISENLGSSDSDTPTGSLSPVSSISGVLTNRFPLAQPKTSFEEEGSLPSSAHDEQHLVKLKLFHKETVSTKDDAAEESCGRTLKLFGTTLLVTDTSKPFSLITEPFKPIPAAATYLMQLQNGCSDLAESPASIVPRWTFSHNALSVPLHRELKGKHLYSNLGDFEHKEVQKEGSWTGSNTSSVNDGDNTAPSETSGIFELRVRAKTCGKGFVPYKRCMAERENKYSSVCDEEREEQRVKLSL*


CDS Sequence:
>Vu_00375.1
ATGGCGATACAAGGCAAAAATGCATTTACTAGATCAAGGGGTGGTCCTCCAATTGGAGATGAAATATGTTTGAGTCCCGGTGTGCATTCTGTTGCTGATATTTCACTACATGATCAGTTTTCTTGTGGAAATGACTATGCCTTGAAGGTAAGGAAACCGTATACAATCACAAAGCAGAGGGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGAAGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTGTTAGAGAGACTAGTGGGAACAGCACAGCCTTGGAGGAATCAATTGAAATTCCACCTCCCCGACCAAAAAGGAAGCCAATTCATCCTTACCCTCGTAAACTGATTGAGATTCCAAAGAAAGAGATTTCCAATTCAGAACACCCTCTGAGGTCTATTTCTCTCAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAGTCGGTGTTATCTACTGTTATTTCCGAAAACCTTGGTTCCTCCGATTCAGACACACCCACTGGAAGTTTGTCACCAGTCTCATCCATTAGTGGTGTCCTCACAAACAGATTTCCACTAGCTCAACCCAAAACATCATTTGAGGAAGAAGGGTCTCTACCAAGTTCAGCTCATGACGAGCAACATCTCGTGAAACTGAAGCTTTTTCACAAAGAAACTGTTTCTACCAAAGATGACGCAGCTGAGGAATCATGTGGTCGTACTCTCAAACTTTTTGGGACCACTCTACTTGTAACAGATACAAGCAAACCCTTTTCTCTAATAACGGAGCCATTCAAACCAATACCTGCGGCTGCAACATATCTTATGCAACTTCAAAACGGGTGTTCTGATCTTGCAGAAAGTCCTGCAAGTATTGTTCCAAGGTGGACTTTTTCACATAACGCACTATCTGTGCCCCTGCACAGGGAGCTAAAAGGGAAACACCTATACTCTAATCTTGGAGATTTTGAACATAAAGAGGTTCAAAAGGAAGGATCATGGACTGGTTCAAACACTAGTTCAGTTAATGATGGAGACAACACTGCACCAAGTGAAACATCAGGTATATTTGAGCTAAGAGTGAGAGCTAAAACCTGTGGGAAAGGGTTTGTGCCATACAAAAGGTGCATGGCAGAGAGAGAAAACAAATACTCATCAGTTTGTGACGAGGAGAGGGAAGAGCAACGTGTCAAGCTTTCCTTATAG


Promoter Sequence:
>Vu_00375::LG1:6540936-6542936(-)
CACATCATATTAATTAATTAATCTATTATTCTCTATTTTATTCATATATTATTACCCACTTGTATATTGTACTCTTGTTGTGTCTCGTTGTATCGCAACGCAGTTTAGTTGACTCACGCCCTCTACTCGCGCTCACTGCTGCTGACGCCTGCTACTTATTTATTTCCGTTGAAACAACCTTTTTCTCCGTTGGAGCAAATTTCATGATTTTTTTTTTGTTTTCATTTCACGAGCCAAACTATAACATTATAACTTTTTAATACATTAATAATCCCCTACTTAAATTTATTCACATCTTAAAAAATTAAATTTTACAATGCCTTACTTAAAAATGTCTGTGCATATAGTGTACTAAATTTACACAAAACACGTTATTTTAACGAAAATATTTATATACTTATTTTGCATATATAGAATCGGTCAAATGCTGCACATGTCAAAGATGTGTAAGTTCTACATTTTAGAAATTGAAACATACGAGACATTAAATGCTTTTTAAAAAATAAAAAATAAACTTTTTTTACATAGTCAAATATAGAAATGTGGTTCAAAATAAAGCAAATGTTTTTTTAAAAAGGAGGCAGGTCAAAACCTGTTACCAAACCATAAAACGCTTAAAAAACAAGAAAAAAAACAGTGGCTGTATAGATTTTAAGGTATGATATTAACACAAAATCAATTTCTAATAGTAATTGATTCATATGACAAAATTATATATCACTTTCAGTGAAACGTCAGTTTTATTAAAATGGCTATTTATTACCTAAAATTCAAAAAATAGTGTTGAGTCCATCATGACATTTGAGGAATAGAAAAGTATAGAATATGTTGTTACAAAGCGAAAAAGAAAAGAAATAGAGTTAGTAGAATAATTTATGAAAAAGCAGAATTATCTGTATGAGAGCTGGGAAAATAATGGCCACGCATTAATCATGATAAAGTGGCGTGGCACCAGTGAGAGTGCGAGTAGCACTGTGGCAGTGGCACCCGCGAGTATGCTCTGTCCCAAATTATCCACAACGCGCTCTCTATTAGTTTTCTTCGGCCACCCAATTAGAAAACGAAGCCGAATTAAAAAAATGAAAAAGAAAAAAAAAACAGAAAAGCGGAAACAGACGCGACAGCGGAACGCCACGTGTGGAGGACCTCTTTCGACGTGAGCCACAAGATTGCATCGAGTTCTCGAGATTTCGATGGAGAAAAAATAAATAAATAAAAAAATTCTTTTTCTCTCTTACAAGACAAAATTCAACATCTGACGTGGCACTCTGTGGTTGCTCCATTTATTTTTCTCTCCTTCACAATAGTCTCTTTCCCACTTGGCTTTTATATCTATCTGCTCTCTTCTTCCCTGTTATTCTCCTTCACTCCATTTTTCATCTTCTTCTGAAAAACCAAACCTTAACCTCTTTTCTCTCTGTTTCTCTCCATCCCTTTTGAGCCTTTTCACCAACCATGACGATTCAGAGAAACTCTTGTGGACTGAGTGTCCTCTGTTTTCGGAACTGTTTTGTTTGAACATCCATCATTTTGTTTTTCCAACAAAGAAACCTTCTATCATCCAGCCTTTTCCCACGGAGGGTTTTCTTGATTTGAGAACTGTGGACCATTTCTTAGTTAATTACATCTGAGTCACTGTTGTTGCTGCTTCTCAATTTGAGATTTGGAAAGGTTTTTGGGGTGATCGTTGCCAATTCACGAGGTGGATTCAGTTTGAATGATCGAGTTTCTGCGGTGCATGGTCACGGGATCTTAGAAGGGTTTCTTCGATTTTGAGCTTAAACTGTAGTGTCGGATAAAACAAAGAGACGAAACAGTGTTTTTGTTTGGTGCCGAGAGAAGTCCAATTCTTGGTTCCAGAGTTGTCGAGGGAGAAGTGTGGACTTTGGTGATTTGTTTGTTTGTGTTACATGCTGTTAAGAAAGTTGTCGATAAAGATAAGTTTTACTGTTTTGGTGTTCTGTGAGCCAACCGTGTAGGAAGGAGAAGATATTCAGCAC


Gene Sequence:
>Vu_00375(-)
ATGGCGATACAAGTATGTAAATATGAGTTTCTTCTTTGTTTTTTCTTTGATGTAGAATGTTTGATGCCGTGTTGAGTGTTTTTGAAGGACATGAGATTGTTGTTGGTTTAGGTCGTACTTGTATGTTTTGTGGTTTGTTCTGGATTTCCAGCCAAAAAGTCTTTTCATTTGGGTATGACATGTCTGGCTCTGTTTTTTGAAGATTAAAAAAAAAAGTCAAATTAAATAATGAAAAAGATAGAGGGCTACTTTATGAACTATGATTTGGTTTTCCTTTTCAAATGCCAAATATTTGTAGTTTTTAATTTTATAAATTTTGGAAAAAAATAACCTTTGAGTGTTTCTGGTTTAGATAACAGTTTGATTTAATCTTCAGCAAAGGCACAATTTTCCTGATCTTTTAAAAAAAAAAGAAAAAAAAAAGCAAGGTTCATTTAATGGAAATTGTGAATTGTTGGTTGATATTTTTTTCACTAAGAGATGAATGATTCCCTGGTGGTCATGATTTTATTTAATTCTACTTGAATTTTTCATTATGAGAAAATTTTCTTTTTCTTCTTGATTATTATATTATACTTATTTGCTTTTTGGATTGGATGCAGGGCAAAAATGCATTTACTAGATCAAGGGGTGGTCCTCCAATTGGAGATGAAATATGTTTGAGTCCCGGTGTGCATTCTGTTGCTGATATTTCACTACATGATCAGTTTTCTTGTGGAAATGACTATGCCTTGAAGGTTGTCCCTTTGTTTCTTATGTTTTTGTGCCATTATAAATTTGATTTTCACATCTGTGACAGTGTTACCTTTGTTTTAATCAATTTTATATGTACATCAACAGGTAAGGAAACCGTATACAATCACAAAGCAGAGGGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGAAGGATTGAAGGTATAATTAATTCTGAACTTCCATATATTATGCCATAAAGATTCTAGCAGAAGAATAATACAAGTCACTGAATCAATCAAGAAGGTTGGTCTAAGTTCTTGGATCCTTTTATTTTCACCACAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTTATTGTTATATTCCAGTACCCATCATTTACCATATGTTAAATATAGCATGAGTCATAATAAGTTAGAGTTGTTATGTTATGACTTTAAGAGATGCAAAAGTTATAACTTTTGGTGTTTAAGAAAATTCTAACTCATTTGTTCTGATTTCATGCAGATTGTTAGAGAGACTAGTGGGAACAGCACAGCCTTGGAGGAATCAATTGAAATTCCACCTCCCCGACCAAAAAGGAAGCCAATTCATCCTTACCCTCGTAAACTGATTGAGATTCCAAAGAAAGAGATTTCCAATTCAGAACACCCTCTGAGGTCTATTTCTCTCAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAGTCGGTGTTATCTACTGTTATTTCCGAAAACCTTGGTTCCTCCGATTCAGACACACCCACTGGAAGTTTGTCACCAGTCTCATCCATTAGTGGTGTCCTCACAAACAGATTTCCACTAGCTCAACCCAAAACATCATTTGAGGAAGAAGGGTCTCTACCAAGTTCAGCTCATGACGAGCAACATCTCGTGGTACTTACTAAATCCTAATAATTTTTCAGGCTAATCTTATATCTCCGTGCAGTATCTTCATGAGAACACTTTTAAGGAAATGATTTTAGAGTTTAGTTTAAATGTACTGCATAGAGTGATTGGTGGATAGAGTACAATTCTTTATACTGACATGAAAATTAAACTCTCCCTTTATTTTATCATCCAGAAACTGAAGCTTTTTCACAAAGAAACTGTTTCTACCAAAGATGACGCAGCTGAGGAATCATGTGGTCGTACTCTCAAACTTTTTGGGACCACTCTACTTGTAACAGATACAAGCAAACCCTTTTCTCTAATAACGGAGCCATTCAAACCAATACCTGCGGCTGCAACATATCTTATGCAACTTCAAAACGGGTGTTCTGATCTTGCAGAAAGTCCTGCAAGTATTGTTCCAAGGTGGACTTTTTCACATAACGCACTATCTGTGCCCCTGCACAGGGAGCTAAAAGGGAAACACCTATACTCTAATCTTGGAGATTTTGAACATAAAGAGGTTCAAAAGGAAGGATCATGGACTGGTTCAAACACTAGTTCAGTTAATGATGGAGACAACACTGCACCAAGTGAAACATCAGGTATATTTGAGCTAAGAGTGAGAGCTAAAACCTGTGGGAAAGGGTTTGTGCCATACAAAAGGTGCATGGCAGAGAGAGAAAACAAATACTCATCAGTTTGTGACGAGGAGAGGGAAGAGCAACGTGTCAAGCTTTCCTTATAG