Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00176 LG1 3899675 3900190 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   shoot system morphogenesis, leaf morphogenesis, shoot system morphogenesis, leaf morphogenesis
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein binding, DNA binding
SNP Position Effect Amino acid change
A/T 3899761 synonymous_variant p.Pro29Pro
T/C 3899762 missense_variant p.Ser30Pro
C/T 3899767 synonymous_variant p.Asn31Asn
C/T 3899773 synonymous_variant p.Leu33Leu
T/C 3899774 missense_variant p.Cys34Arg
G/A 3899775 missense_variant p.Cys34Tyr
A/C 3899816 missense_variant p.Ile48Leu
C/T 3899818 synonymous_variant p.Ile48Ile
C/A 3899821 synonymous_variant p.Thr49Thr
A/T 3899839 splice_region_variant&intron_variant
C/G 3899881 downstream_gene_variant
T/G 3899973 splice_region_variant&intron_variant
A/G 3900028 synonymous_variant p.Glu70Glu
C/A 3900038 synonymous_variant p.Arg74Arg
A/G 3900041 missense_variant p.Ile75Val
T/G 3900043 missense_variant p.Ile75Met
C/T 3900049 synonymous_variant p.Asn77Asn
T/G 3900055 synonymous_variant p.Val79Val
C/A 3900073 synonymous_variant p.Ile85Ile
G/C 3900082 missense_variant p.Lys88Asn
C/T 3900090 missense_variant p.Thr91Ile
T/C 3900099 missense_variant p.Leu94Ser
A/T 3900100 missense_variant p.Leu94Phe
A/T 3900109 missense_variant p.Gln97His
T/C 3900126 missense_variant p.Val103Ala
G/C 3900128 missense_variant p.Glu104Gln
A/C 3900132 missense_variant p.Glu105Ala
A/G 3900133 synonymous_variant p.Glu105Glu
A/G 3900136 synonymous_variant p.Glu106Glu
A/G 3900148 missense_variant p.Ile110Met
T/C 3900168 missense_variant p.Ile117Thr
C/A 3900174 missense_variant p.Thr119Asn
C/T 3900186 missense_variant p.Thr123Ile
A/C 3900189 stop_lost&splice_region_variant p.Ter124Serext*?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00176.1
MGGTSSPCASCKLLRRRCSPDCIFAPYFPSNDLCKFAMVHKVFGCSNITKILKNVPVEQRGDAVRSLVYEANARIRNPVYGCVGIISKLETQVLELQMQLAVVEEEILSIKMQQEFIFTNGGT*


CDS Sequence:
>Vu_00176.1
ATGGGTGGTACTTCTTCACCTTGTGCTTCGTGCAAGTTGTTGAGGCGCCGTTGCTCTCCGGATTGCATCTTTGCTCCTTATTTTCCATCCAACGATCTCTGCAAGTTTGCCATGGTGCACAAGGTCTTTGGCTGCAGCAATATCACCAAAATTCTAAAGAATGTTCCCGTCGAGCAAAGAGGAGATGCAGTGAGGAGTTTAGTTTATGAAGCAAATGCACGAATTAGAAACCCTGTTTATGGTTGTGTTGGAATCATATCTAAGCTAGAAACTCAAGTTTTAGAGTTACAAATGCAGCTTGCAGTAGTTGAGGAAGAAATTCTCAGCATAAAAATGCAGCAAGAATTTATCTTCACCAATGGTGGTACATAA


Promoter Sequence:
>Vu_00176::LG1:3897675-3899675(+)
ACCGAGGTAATATGACTTATATGCTTTGGTTGATTTTGAACCGAGACGTATAAGTTCGCTTAAACTACAAAAATGCCACTGCATTTTGATAGGCTTCGGTTTCACCTAAACCGAAGCCTATAACGCGAGTTTAAAACCAATTTTTTTACTAGTGAATCCATTAAAATTAACTTTCTGAGATTGAAACTAACAAAAAAATATGATCAATCTTCCATTTTGTTGAGGAACAAAACCTCAATTTAGACCTACCTCTAATGTAATTCATGTTATAATTTCAGAACTAAAAATAAATGTCAAATGCAAATGTGTTTGTATTACATATATCAAACACAGGACAAAGAGAAAGAGAGAAAGAAGAGAAATTCATTGAAAATGAAAGAATCTGATTACAGACAAAAAAGCTGAAACCTAATAATCTTACTGACGGAGAGGGATAACATATTGGGATATGGATACAATTTATTGTCTTTAATTATTTGATATGGTTATATTTATTAGTCCAACATTTTTGGTCAAAATGTGAAACATAATGTCGTATTTTAGTGAAAAATGTTAGTCAAAATTACTCACAACTTATTTTGACCGTGCACATTTTGTAATAATTCATAATATATTGTAATTATCAATTTCAATGTATTGTTTAATTTCACTTTCTGCTCTTTCAATAAAACGCTTACATACTATTTAACAAATCCAACATTTATAAATGAATAACTTAACTCAAATAACATTTATATTATTTGTTAAAACGTGAGTTATTTATTTATTTTTTATTTATTTATAGAGAATAAAAAGGACCACATAGAAGCTCACTTGTCGCAAAATTTCTTTGAAGGAACTAAGTACAAGCACCTATATTTTTCACATACCAAAATAGCCAACTTCGCTCTTATTTTATTTTATAACATTTTTTAGTTAAGAGGATAAAATTTATCAACCAAAATATAAAAAAAAAAAATGTGCTGTTTTTACAAGGTCAAATACACCTTATAAAACCATTAACGTTTTCGCTTTTGTTCCTGTAGGTCAGTCTTGGTTTCGATCTCGAGTTTCAATTAATAGTTAATTTTCGAAAGGATATATTGAGTCTATTAAAGCTAACTTTTTTTTTTATCTTGAATGTCTACCTGCTTATACTACTTTATGTTGGGCCTTTTACTGTTTGTGATTAAGCAAAGGGCCAATAATGGTCTAATTATATTTTGGGGTTGTATCTTATATCTAACCCTGTTTAAGCGTTAATTTTGGCTTTAGTCGTGGTATTAATTGTCGTGCGAAAGTGTTATGTTGACTTGGTTGCTCGTTGTAGAGGGACACATTGGAACGCAAGGAAGCATCTGTCGTGCTAAGGGGTCGAAAGAGTCTCGAGTCCTGATGTTACCATGCGATGAACCCTCATAGTATATTTATTCCCATACTCAAGTGAATATATAGAGTTTTAATTTGTGAATATTTACCATGATAAAATTTCAATTTTAACTGAAAAAATAAACACAAAAATAATTTTAAAAAATACATCTAAGGTTTCTCCATATAAGTTTTTCATTAACCTTGGTTGAATAAAGGAAGATAAGATGTATTAATTTATATAATTCAACTTTTATAAAAGTAAAAACCCTTATCTAAATTCTTAATAGAAAAAGGAGATAGGCAAATTCATTTTAATATATTAAAGAACTTTACTTGTTTTTATTATCTTTATATATATCTTCTTCGTGTAGAAAAAATTACCCTAGTAGCATTCAGTTCATTCATTCTATATCCTAAAAGTCATTATTTGATGTCATTCATCATACTTTCATCAAGACACGTAAACGCTTTCCACAGTTACGTCAAATATGTACAACTGTTCTTGTTAGACAAGAGACTGTAATCACAACATCATTATAAACATGTTACATGTTACATGTTACCTTTGTTGCATATATAAATTCAAATTCAGGAAACCAAGAACACTTGCTTTCTATAGGCTGGTCAACATCGATTCTTGGATTTTGAAA


Gene Sequence:
>Vu_00176(+)
ATGGGTGGTACTTCTTCACCTTGTGCTTCGTGCAAGTTGTTGAGGCGCCGTTGCTCTCCGGATTGCATCTTTGCTCCTTATTTTCCATCCAACGATCTCTGCAAGTTTGCCATGGTGCACAAGGTCTTTGGCTGCAGCAATATCACCAAAATTCTAAAGGTCTGATCGGTTTAATAATATCTATTTCATTTTTATAATCAATCTAACAGAACTTCATTAAGAAATGATAAACTATTTCAACGGTTCAATGTAGTTCTTGGTTGTGTGTGTTTGATTAACTTGTTTGTATGTTTTTGCTTGCAGAATGTTCCCGTCGAGCAAAGAGGAGATGCAGTGAGGAGTTTAGTTTATGAAGCAAATGCACGAATTAGAAACCCTGTTTATGGTTGTGTTGGAATCATATCTAAGCTAGAAACTCAAGTTTTAGAGTTACAAATGCAGCTTGCAGTAGTTGAGGAAGAAATTCTCAGCATAAAAATGCAGCAAGAATTTATCTTCACCAATGGTGGTACATAA