Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_00159	LG1	3573012	3574368	PREDICTED: basic leucine zipper 34-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, pollen development, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, DNA binding, protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA binding

SNP	Position	Effect	Amino acid change
A/T	3573114	stop_gained	p.Lys35*
A/G	3573330	intron_variant
T/A	3573335	intron_variant
T/A	3573360	intron_variant
T/A	3573362	intron_variant
A/T	3573662	intron_variant
G/A	3573695	intron_variant
A/G	3573773	intron_variant
C/G	3573930	intron_variant
A/T	3573931	intron_variant
T/A	3573976	intron_variant
G/T	3574006	stop_gained	p.Glu115*
A/C	3574039	missense_variant	p.Lys126Gln
A/T	3574043	missense_variant	p.Lys127Met
A/T	3574046	missense_variant	p.His128Leu
G/A,T	3574050	synonymous_variant	p.Leu129Leu
A/T	3574101	missense_variant	p.Glu146Asp
T/C	3574145	intron_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_00159.1

MGELKIRGNLVEEKTWSKIPTLIKPIPLRAQPWQKPSNPLHKLATIPENDHILTEENPNGDHNTSNEVQENIEQEMKNKFKRIVSNRHAARRSRLKKLAYIDELENELKAYERKKEVLHGEIAEQRKKHLSLEIEHHTLKFHLAAREKQRILQEVEIEKNRAEVDKMLEVQRRMVNFRSLQLMTNSNFNPSAFA*

CDS Sequence:
>Vu_00159.1

Promoter Sequence:
>Vu_00159::LG1:3571012-3573012(+)

TGAAGTCTCCAACAAACTCATGGTCATCATTAAAGAAAAGATTTGGAAAAGAAGAAATGGAAAATAAAATTTGCACTTAATATATTATGTTAGATCATTTGTAATCAAGATATAAATTTACATATTAGCTCTTATGATTAAACATAAGGACTTGTTCTTTTAAGTGGATTTGAGGGGATTTGAGAGGATTTGAAGATAATTTTTTTTGTCGTTTTTTTGGACGAATTTGGAGGTAAATGAAAGTGAATTTGAAAATAATTTTTTTTAATTTCTCACATCAATACAATTCTATACTAATTTTCACAAATTTTATTTTCAAATTCACTCTCATTTATCTCCAAATTCGCTTAAAAAAACGACAAAAAAAATTATCTTCAAATCCTCTCAAATCCCCTCAAATCCCCTCAAATCCACTCAAATCAACAATAAATGAGATTTTTTTTGTATACGATCTTTCATTATTAGATGCAAAAAAGTCTCATTTACATCTGACCAGGAGGGATGCAATATAAATTTATTTTTATCACAAAAGATTTGATAAAAATGAGATTTTTTTACAGTGATTAAAAAGAGACAAACGTAAAAAGGCTTCTCTTATTTACAAATTTTTCACTGCACTTTTTTAATATTACAAACGTAAAAAGGCTTCTCTTATTTACAAAATTTATTTTCCATTAATATTACAAAATCATTAAAAAAACCTTTAATGAAAGAGGATTAGACGTTTAATATAAAAGTAAAATGTATACGTATGATACCAAAACTTAATTCGAATGAACGCGCATTTAACAAAAATATAAATAAAAACTGAATTAATTTGACATGCTCACCGAATAATTACAAAGTAAAGAATGCGAAACTCGACAATTTTCAAAAAGTAAGCATAATACACTGGTGACAACTTTTTATAAAGTTAATTAATTAATAGCTGGTTGAATTATTTCTTTATTTACCTTTATACATTTCCTTATTTTTTAAACTATAACAATATTTGTTTGAACATAAACAACATACTATCAAACAAAAGTGTAAATATATAATTTTTATAAATTGATATACTTCTTTCCATGCACACTTCTTCTCTTTCTCTCTCTATGCAAAAATATAATTGTGATTTTTTTTCAAACAAAATAAAAATATAAAAGCAAAATAGAACACACTATATTAGTTTAAATGCTCGATTAAAATTTACGTAAGTTTTGATTAGATTTATTTTAATACACCAGCCTTCCATTTTTGTTTAAAAATTAATACCATTTTTGTTTTAACTACACGTCTTAATTAGTTGTAGTTTAGAGATGAATAAAAGAACGATACTAATCAAGAACTAAATGCAAACATACATTTATCATCTTAATTTTTGAACATCGAAATCAAAAGTTAATGTCAGACACTGTAGTTTGCTGAAACACATCAGGGGCAAATGATCTATTCATATCTTATTAAAATATATTCATTTTTTCCCAAAAATGTTTTGGAATCTTAATTAATCGCCAAGTTACCTGGTTCATGTGACAACAATACACCAATCATTACATGAATTAGCAAAAACTATACTAATCCAACAACTAAACATACCATGTTCTTCCCACGTATTTAAGGAAGAAAGCTTCTTTCTAGAAGGTATATTTGGTAAATACACGTGTATCTTCTTTGTGTTGAAAAAGAGATAAAAAAAACATTCATTTTACCAGATCAATAATCCTATGTTCATAAGCTTTATGTTTTGTCATTAACATTTTTCACACTATTCCTTTTACATGCATGTAGTTTTCCTCTTTACCTTCTCTCAATTTGACATATTATTAATGCAACAAAAAATATATTCTGTCCATACAAAAATAATAATAAAATGCTATATGTGGGTTTTCTACTTTCTCTAATATGATGATGCACATATTTATAACATATTTTCTAGCAAAGATATTTGTGTTTATGCAAATCTATGCTTAAATTTGATAACTCCTTGTTTTGCAGAGAGACAAAAGAACAGAGGAAAA

Gene Sequence:

>Vu_00159(+)

ATGGGAGAACTTAAGATTAGAGGGAACCTAGTAGAAGAAAAGACATGGTCAAAGATACCCACTTTAATCAAGCCTATTCCTCTAAGAGCTCAACCATGGCAAAAACCTTCCAATCCACTCCATAAGCTTGCCACCATTCCAGAAAATGATCACATTCTTACAGAGGAAAACCCTAATGGAGATCACAACACTTCCAATGAAGTCCAAGAAAACATTGAGCAAGAAATGAAAAATAAGTTTAAAAGGTATGTATATGCTGTTTTTAATTACATGCTTGCATATATAATGATGAAATGTTTATGTATAATTAAAGAAAAAAATCATTAAACCTTTGTGATTTAAATCCTCTTTATGGAAAAATATATTTTGATCTCTAACTTTAGTCTTAATTCTTTGATTTTTGTATAGTTATAATAAAGATATGAAAATATGTTTTTGGTTTTGTATAATTTTGTTTTTCTGGTGATTAGAATCGTTTCAAACCGACATGCTGCACGAAGATCGAGATTGAAGAAACTTGCATACATCGATGAGCTAGAAAACGAATTGAAAGCGTACGAGGTGATTAAGACCGTTCATTGAAACAATCAATTTTATATATTTAGCATGTTCATGCAAAAACAATCAATGTTTATTTGCGTAGTTGTTGGATATAAAATGATTTTCCTTTCCTCAAAACGAATGTCTAACCAAGAACAAATATCGCTAATGAAAAATTAGGGCACTAAATTTACATAATCTGTTGTACTTTACGAAATTCTATAAACCCTTTTGAGAATAGACATCGGAGAATATCAGTTTTGGAGTAGTTTGTAATTTTTTTTTAATTATAAAAATGTCATGTTATTTTTAATATATATATATATATATATATATATATATATATATATATATATATATATATTCCAAAAAAGCTTACATGAGAGGAATAAAATGTTGTACTATAGCCATAGTAAAAGCTTAGTATAGAGTGTTGGGTGTGCAGAGGAAGAAAGAAGTTCTCCACGGAGAAATTGCAGAGCAACGAAAGAAGCATCTGTCGTTGGAAATTGAGCATCATACTTTGAAATTTCATTTGGCTGCTCGTGAAAAGCAAAGAATTCTTCAAGAAGGTAACAATGTCATAAACATATTAGAATCAGAATATAATCTAAAATTTGAACATTTAATTAAGTAGAGGGTTATTTTTGTATTTGTGACAGCTTTTGTAAAAGTTTAATTCCTTTTTTTGATAGTTGAGATTGAAAAGAACAGAGCAGAAGTTGATAAAATGTTGGAAGTGCAAAGGAGAATGGTTAATTTCAGATCGTTGCAGCTTATGACCAATTCCAACTTTAACCCTTCAGCCTTCGCCTGA